CSPI03G20280.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTTTTACACCTTACCCAAATTTCAGACCGTTGCGAAACCAAATTCCCTTTTTCTTTTCAAACCCCACAAAAACACAAAGCACACTCATTATCTCTTCTTCTTCTTCTTCTTCTTCTTCACCTCATTCAATCAAAACCACAAACCTTCCTCACCCTTCAACAATGGCCCACAAATTCCCCCATCTCCCCTTCCACTCCATCGACTCCAGATCCCTCCTCCTCCACCAGAACTCCGCCGCCGACCACCCCATCTCTCTCCACCTCACACCTGAGCCTTTTTCCATGGAAAGAGGCCCAAGGTACAGAGCCTACGCAGAGCTCAGAGAATCCAAGCTCCGCTTGAGAAACGCCATGTATCGCCACGATGAACACCCGGAGAAGTCCACCCCGCCGCCCAAGAAGCAAGTTAAATTTCTGGGTTCGGAGACTGTAAGGAAAAGGTCCGCTACGGTGGCGCAATCGGTGCCGGATTTCTCTGCAGTGCTAAGAAAGGAGAATAGAAAGCCGCCGCCGGGGATGTTGTCGCCAGTGATGGAGATGACGCCCCCGGGGAAGACGTGGGGGAAGAATATTGGGGGATTGTCGACGAATTCGAGGGGGAGTAAGTCCGCGAGTGCAGGGGAGAAAAGGGGCGGCGGATTGACGGCGGTGAGGAAAAGCTACGCCGGATTTGAGGAGCTGAAGGGGTTTTCTACGGCGGCGGCGAACGCCATTAATGGTGAAAATAGGAAAGGAGGGAGGAGAGGGAAGACTGTATTGGGGGTTAGACAAATCTGAATGAAAATAAGAAACAAATTATTGTATTTTCTCGATGGAAGAAGATTGCTCTGTTTATGTGTTACAATGTTTTTTAATTTTTGTTGGTTTTGGTGTTGTTTTTCTAGGATACTTTTGATTCTTTTATTATATAATGGATAATTTGAGTTTGTGGAATAATGAAGTGAGAAGTAAAAGAAAACTGTTGTTATTTGTTC ATGGCCCACAAATTCCCCCATCTCCCCTTCCACTCCATCGACTCCAGATCCCTCCTCCTCCACCAGAACTCCGCCGCCGACCACCCCATCTCTCTCCACCTCACACCTGAGCCTTTTTCCATGGAAAGAGGCCCAAGGTACAGAGCCTACGCAGAGCTCAGAGAATCCAAGCTCCGCTTGAGAAACGCCATGTATCGCCACGATGAACACCCGGAGAAGTCCACCCCGCCGCCCAAGAAGCAAGTTAAATTTCTGGGTTCGGAGACTGTAAGGAAAAGGTCCGCTACGGTGGCGCAATCGGTGCCGGATTTCTCTGCAGTGCTAAGAAAGGAGAATAGAAAGCCGCCGCCGGGGATGTTGTCGCCAGTGATGGAGATGACGCCCCCGGGGAAGACGTGGGGGAAGAATATTGGGGGATTGTCGACGAATTCGAGGGGGAGTAAGTCCGCGAGTGCAGGGGAGAAAAGGGGCGGCGGATTGACGGCGGTGAGGAAAAGCTACGCCGGATTTGAGGAGCTGAAGGGGTTTTCTACGGCGGCGGCGAACGCCATTAATGGTGAAAATAGGAAAGGAGGGAGGAGAGGGAAGACTGTATTGGGGGTTAGACAAATCTGA ATGGCCCACAAATTCCCCCATCTCCCCTTCCACTCCATCGACTCCAGATCCCTCCTCCTCCACCAGAACTCCGCCGCCGACCACCCCATCTCTCTCCACCTCACACCTGAGCCTTTTTCCATGGAAAGAGGCCCAAGGTACAGAGCCTACGCAGAGCTCAGAGAATCCAAGCTCCGCTTGAGAAACGCCATGTATCGCCACGATGAACACCCGGAGAAGTCCACCCCGCCGCCCAAGAAGCAAGTTAAATTTCTGGGTTCGGAGACTGTAAGGAAAAGGTCCGCTACGGTGGCGCAATCGGTGCCGGATTTCTCTGCAGTGCTAAGAAAGGAGAATAGAAAGCCGCCGCCGGGGATGTTGTCGCCAGTGATGGAGATGACGCCCCCGGGGAAGACGTGGGGGAAGAATATTGGGGGATTGTCGACGAATTCGAGGGGGAGTAAGTCCGCGAGTGCAGGGGAGAAAAGGGGCGGCGGATTGACGGCGGTGAGGAAAAGCTACGCCGGATTTGAGGAGCTGAAGGGGTTTTCTACGGCGGCGGCGAACGCCATTAATGGTGAAAATAGGAAAGGAGGGAGGAGAGGGAAGACTGTATTGGGGGTTAGACAAATCTGA
BLAST of CSPI03G20280.1 vs. TrEMBL
Match: A0A0A0L9P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258110 PE=4 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 5.7e-108 Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. TrEMBL
Match: A5BVN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004818 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.8e-43 Identity = 120/202 (59.41%), Postives = 137/202 (67.82%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. TrEMBL
Match: A0A061EPD3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019425 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.2e-42 Identity = 117/204 (57.35%), Postives = 137/204 (67.16%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. TrEMBL
Match: U5GIG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15480g PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 7.1e-42 Identity = 121/206 (58.74%), Postives = 140/206 (67.96%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. TrEMBL
Match: A0A067KA19_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12998 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40 Identity = 112/202 (55.45%), Postives = 137/202 (67.82%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. TAIR10
Match: AT1G67035.2 (AT1G67035.2 unknown protein) HSP 1 Score: 99.0 bits (245), Expect = 3.6e-21 Identity = 85/219 (38.81%), Postives = 117/219 (53.42%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. TAIR10
Match: AT5G38300.1 (AT5G38300.1 unknown protein) HSP 1 Score: 85.9 bits (211), Expect = 3.2e-17 Identity = 66/140 (47.14%), Postives = 82/140 (58.57%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. NCBI nr
Match: gi|778680592|ref|XP_011651352.1| (PREDICTED: uncharacterized protein LOC101205045 [Cucumis sativus]) HSP 1 Score: 398.3 bits (1022), Expect = 8.2e-108 Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. NCBI nr
Match: gi|659123205|ref|XP_008461547.1| (PREDICTED: uncharacterized protein LOC103500118 [Cucumis melo]) HSP 1 Score: 345.5 bits (885), Expect = 6.3e-92 Identity = 177/188 (94.15%), Postives = 181/188 (96.28%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. NCBI nr
Match: gi|731417756|ref|XP_010660416.1| (PREDICTED: uncharacterized protein LOC104881565 [Vitis vinifera]) HSP 1 Score: 183.0 bits (463), Expect = 5.4e-43 Identity = 120/202 (59.41%), Postives = 137/202 (67.82%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. NCBI nr
Match: gi|645279060|ref|XP_008244523.1| (PREDICTED: uncharacterized protein LOC103342666 [Prunus mume]) HSP 1 Score: 182.6 bits (462), Expect = 7.1e-43 Identity = 126/205 (61.46%), Postives = 139/205 (67.80%), Query Frame = 1
BLAST of CSPI03G20280.1 vs. NCBI nr
Match: gi|658026445|ref|XP_008348645.1| (PREDICTED: uncharacterized protein LOC103411800 [Malus domestica]) HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43 Identity = 119/207 (57.49%), Postives = 136/207 (65.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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