CSPI03G19250.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G19250.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ankyrin repeat protein
Location	Chr3 : 15053399 .. 15054001 (+)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTTATCTAGCTAGAACATACAAAGAAGTGAGAGAACTTGCGAATTGTTTTTTCTAATCATTTTCTGTTTTATATCAAGTTTAATGCTGATGTTCATTTTGTCTATTTAAATTGAAGAAAAAGTTCAGCTTCAATTTTTAATTCTCATACTGGATGTCGGCCTTATTTTGAGATCTTTGTATATTTGCAGAATGTTCGTCGCCTATTATCTGTTAATGGAATTAACATCAATGCCATCAACAAGAATGGAGAAACCCCACTTGACATTGCGGAGAAATTTGGATCTTCAGAACTTGTAAACATCTTGAAGGAAGCAGGTGCAGTCATTTCCAAAGACCAGGGCAAACCCCCAAGTGCAGCCAAGCAACTTAAGCAGACGGTTAGTGACATAAAGCATGATGTTGAATCCCAACTACAGCAGACCCGCCAAACTGGTTTTAGGGTTCAGAGAATCGCGAAAAGGTTAAAGAAACTTCACATTAGTGGTCTCAACAATGCCATAAACTCTGCAACTGTTGTGGCTGTTCTCATTGCTACTGTTGCTTTTGCGGCTATATTCACCGTACCAGGACAGTTTGTCGAGCAGAAATCGAATGA

mRNA sequence

ATGAAAGGTTATCTAGCTAGAACATACAAAGAAAATGTTCGTCGCCTATTATCTGTTAATGGAATTAACATCAATGCCATCAACAAGAATGGAGAAACCCCACTTGACATTGCGGAGAAATTTGGATCTTCAGAACTTGTAAACATCTTGAAGGAAGCAGGTGCAGTCATTTCCAAAGACCAGGGCAAACCCCCAAGTGCAGCCAAGCAACTTAAGCAGACGGTTAGTGACATAAAGCATGATGTTGAATCCCAACTACAGCAGACCCGCCAAACTGGTTTTAGGGTTCAGAGAATCGCGAAAAGGACAGTTTGTCGAGCAGAAATCGAATGA

Coding sequence (CDS)

ATGAAAGGTTATCTAGCTAGAACATACAAAGAAAATGTTCGTCGCCTATTATCTGTTAATGGAATTAACATCAATGCCATCAACAAGAATGGAGAAACCCCACTTGACATTGCGGAGAAATTTGGATCTTCAGAACTTGTAAACATCTTGAAGGAAGCAGGTGCAGTCATTTCCAAAGACCAGGGCAAACCCCCAAGTGCAGCCAAGCAACTTAAGCAGACGGTTAGTGACATAAAGCATGATGTTGAATCCCAACTACAGCAGACCCGCCAAACTGGTTTTAGGGTTCAGAGAATCGCGAAAAGGACAGTTTGTCGAGCAGAAATCGAATGA

Homology

[Close]

BLAST of CSPI03G19250.1 vs. Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 39/97 (40.21%), Postives = 65/97 (67.01%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAG-----AVISKDQGKPP 70
           E V+ +L    ++  A+NK+GET LDIAEK G  E+V +L++ G     ++   ++ +P 
Sbjct: 241 EIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPS 300

Query: 71  SAAKQLKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
            ++++LK+TVS+I H+V +QL+QT +T   +Q IAKR
Sbjct: 301 GSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKR 337

[Close]

BLAST of CSPI03G19250.1 vs. Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 16  LLSVNGININAINKNGETPLDIAEKFGSSE----LVNILKEAGAVISKDQGKPPSAAKQL 75
           LL+   I +NAIN   ET +D+A+K   SE    +   L EAGA   +  G+   A + L
Sbjct: 249 LLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEA-RAL 308

Query: 76  KQTVSDIKHDVESQLQQTRQTGFRVQRIAK 102
           K+ VSDIKH+V+SQL Q  +T  RV  IAK
Sbjct: 309 KRAVSDIKHEVQSQLLQNEKTNRRVSGIAK 337

[Close]

BLAST of CSPI03G19250.1 vs. TrEMBL
Match: A0A0A0KGE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411230 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ
Sbjct: 287 ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 346

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR
Sbjct: 347 LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 378

[Close]

BLAST of CSPI03G19250.1 vs. TrEMBL
Match: A0A072U691_MEDTR (Ankyrin repeat protein OS=Medicago truncatula GN=MTR_7g117620 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-32
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           +NVRRLLS  GININA NK GETPLD+AEKFGS +LV+I+++AGAV S DQGKPP+AAKQ
Sbjct: 266 QNVRRLLSTEGININATNKAGETPLDVAEKFGSPDLVSIMRDAGAVNSTDQGKPPNAAKQ 325

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTG RVQ+IAK+
Sbjct: 326 LKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKK 357

[Close]

BLAST of CSPI03G19250.1 vs. TrEMBL
Match: W9RQM8_9ROSA (Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_020354 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-32
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           ENVR LLSV G NINAINK GETPLDIAEK G+ ELV++LKEAGA  S DQGKPP+AAKQ
Sbjct: 301 ENVRCLLSVEGANINAINKAGETPLDIAEKIGTPELVSVLKEAGATNSTDQGKPPNAAKQ 360

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTG RVQ+IAKR
Sbjct: 361 LKQTVSDIKHDVQSQLQQTRQTGVRVQKIAKR 392

[Close]

BLAST of CSPI03G19250.1 vs. TrEMBL
Match: V7B2G4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G263200g PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-31
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           +NVRRLLS+ GININ+ NK GETPLD+AEKFGS ELV+IL++AGA  S DQGKPP+A+KQ
Sbjct: 280 QNVRRLLSMEGININSTNKAGETPLDVAEKFGSPELVSILRDAGAANSTDQGKPPNASKQ 339

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTG RVQ+IAK+
Sbjct: 340 LKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKK 371

[Close]

BLAST of CSPI03G19250.1 vs. TrEMBL
Match: B9IJ59_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03960g PE=4 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 8.9e-31
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           +NV  LLSV GININAINK GETPLDIAEK G  ELV+ILK+AGA  SKD GKPP+AAKQ
Sbjct: 338 QNVHCLLSVEGININAINKAGETPLDIAEKLGIQELVSILKKAGANNSKDCGKPPNAAKQ 397

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTGFRVQ+IAK+
Sbjct: 398 LKQTVSDIKHDVQSQLQQTRQTGFRVQKIAKK 429

[Close]

BLAST of CSPI03G19250.1 vs. TAIR10
Match: AT2G31820.1 (AT2G31820.1 Ankyrin repeat family protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.0e-29
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1


Query: 13  VRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQLK 72
           VR L+S  GIN+N INK G+TPLD++EK G++ELV++LKEAGA  +KD GKP + AKQLK
Sbjct: 376 VRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNPAKQLK 435

Query: 73  QTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           QTVSDIKH+V+SQLQQ+RQTG RVQ+IAKR
Sbjct: 436 QTVSDIKHEVQSQLQQSRQTGVRVQKIAKR 465

[Close]

BLAST of CSPI03G19250.1 vs. TAIR10
Match: AT1G05640.1 (AT1G05640.1 Ankyrin repeat family protein)

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-28
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 1


Query: 13  VRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQLK 72
           VR L+S +GIN+NA+NK G+T LDIAEK G+ ELV++LKEAGA  +KD GKP + AKQL 
Sbjct: 340 VRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQLN 399

Query: 73  QTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           QTVSDIKH+V+SQLQQ+RQTG RV+RIAKR
Sbjct: 400 QTVSDIKHEVQSQLQQSRQTGVRVRRIAKR 429

[Close]

BLAST of CSPI03G19250.1 vs. TAIR10
Match: AT1G07710.1 (AT1G07710.1 Ankyrin repeat family protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-14
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 13  VRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKD-QGKPPSAAKQL 72
           V+ LL+ N  +  A+N++GET LD AEK G+ E+  IL++ G   +K  +   P+ A++L
Sbjct: 253 VKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGPNPAREL 312

Query: 73  KQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           KQTVSDIKH+V +QL+ TR T  RVQ IAK+
Sbjct: 313 KQTVSDIKHEVHNQLEHTRLTRKRVQGIAKQ 343

[Close]

BLAST of CSPI03G19250.1 vs. TAIR10
Match: AT5G60070.1 (AT5G60070.1 ankyrin repeat family protein)

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-14
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 26  AINKNGETPLDIAEKFGSSELVNILKEAGAVISK--DQGKPPSAAKQLKQTVSDIKHDVE 85
           AIN+ GETPLD AEK G  ++  +LK  G   +K  +    P+AA++LKQTVSDIKH+V 
Sbjct: 276 AINRAGETPLDTAEKTGHPQIAAVLKTRGVPSAKAINNTTRPNAARELKQTVSDIKHEVH 335

Query: 86  SQLQQTRQTGFRVQRIAKR 103
            QL+  R+T  RVQ IAKR
Sbjct: 336 HQLEHARETRKRVQGIAKR 354

[Close]

BLAST of CSPI03G19250.1 vs. TAIR10
Match: AT5G02620.1 (AT5G02620.1 ankyrin-like1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 39/97 (40.21%), Postives = 65/97 (67.01%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAG-----AVISKDQGKPP 70
           E V+ +L    ++  A+NK+GET LDIAEK G  E+V +L++ G     ++   ++ +P 
Sbjct: 241 EIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPS 300

Query: 71  SAAKQLKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
            ++++LK+TVS+I H+V +QL+QT +T   +Q IAKR
Sbjct: 301 GSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKR 337

[Close]

BLAST of CSPI03G19250.1 vs. NCBI nr
Match: gi|449444933|ref|XP_004140228.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ
Sbjct: 287 ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 346

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR
Sbjct: 347 LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 378

[Close]

BLAST of CSPI03G19250.1 vs. NCBI nr
Match: gi|659097059|ref|XP_008449420.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 5.7e-39
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           ENVR LLSV GININAINKNGETPLDIAEKFGS+ELVNILKEAGAVISKDQGKPPSAAKQ
Sbjct: 287 ENVRCLLSVKGININAINKNGETPLDIAEKFGSTELVNILKEAGAVISKDQGKPPSAAKQ 346

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR
Sbjct: 347 LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 378

[Close]

BLAST of CSPI03G19250.1 vs. NCBI nr
Match: gi|922347480|ref|XP_013450650.1| (ankyrin repeat protein [Medicago truncatula])

HSP 1 Score: 144.8 bits (364), Expect = 8.9e-32
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           +NVRRLLS  GININA NK GETPLD+AEKFGS +LV+I+++AGAV S DQGKPP+AAKQ
Sbjct: 266 QNVRRLLSTEGININATNKAGETPLDVAEKFGSPDLVSIMRDAGAVNSTDQGKPPNAAKQ 325

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTG RVQ+IAK+
Sbjct: 326 LKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKK 357

[Close]

BLAST of CSPI03G19250.1 vs. NCBI nr
Match: gi|703117265|ref|XP_010101339.1| (Ankyrin repeat-containing protein [Morus notabilis])

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           ENVR LLSV G NINAINK GETPLDIAEK G+ ELV++LKEAGA  S DQGKPP+AAKQ
Sbjct: 301 ENVRCLLSVEGANINAINKAGETPLDIAEKIGTPELVSVLKEAGATNSTDQGKPPNAAKQ 360

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTG RVQ+IAKR
Sbjct: 361 LKQTVSDIKHDVQSQLQQTRQTGVRVQKIAKR 392

[Close]

BLAST of CSPI03G19250.1 vs. NCBI nr
Match: gi|593331305|ref|XP_007139079.1| (hypothetical protein PHAVU_009G263200g [Phaseolus vulgaris])

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-31
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 11  ENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQ 70
           +NVRRLLS+ GININ+ NK GETPLD+AEKFGS ELV+IL++AGA  S DQGKPP+A+KQ
Sbjct: 280 QNVRRLLSMEGININSTNKAGETPLDVAEKFGSPELVSILRDAGAANSTDQGKPPNASKQ 339

Query: 71  LKQTVSDIKHDVESQLQQTRQTGFRVQRIAKR 103
           LKQTVSDIKHDV+SQLQQTRQTG RVQ+IAK+
Sbjct: 340 LKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKK 371

The following BLAST results are available for this feature:

BLAST of CSPI03G19250.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5262_ARATH	1.9e-10	40.21	Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620...	[more]
Y2168_ARATH	3.1e-08	44.44	Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680...	[more]

BLAST of CSPI03G19250.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGE0_CUCSA	4.3e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411230 PE=4 SV=1	[more]
A0A072U691_MEDTR	6.2e-32	79.35	Ankyrin repeat protein OS=Medicago truncatula GN=MTR_7g117620 PE=4 SV=1	[more]
W9RQM8_9ROSA	8.1e-32	82.61	Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_020354 PE=4 SV=1	[more]
V7B2G4_PHAVU	1.8e-31	78.26	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G263200g PE=4 SV=1	[more]
B9IJ59_POPTR	8.9e-31	81.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03960g PE=4 SV=2	[more]

BLAST of CSPI03G19250.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31820.1	2.0e-29	70.00	Ankyrin repeat family protein	[more]
AT1G05640.1	2.8e-28	70.00	Ankyrin repeat family protein	[more]
AT1G07710.1	3.0e-14	48.35	Ankyrin repeat family protein	[more]
AT5G60070.1	6.8e-14	53.16	ankyrin repeat family protein	[more]
AT5G02620.1	1.1e-11	40.21	ankyrin-like1	[more]

BLAST of CSPI03G19250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444933\|ref\|XP_004140228.1\|	6.1e-41	100.00	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
gi\|659097059\|ref\|XP_008449420.1\|	5.7e-39	96.74	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo]	[more]
gi\|922347480\|ref\|XP_013450650.1\|	8.9e-32	79.35	ankyrin repeat protein [Medicago truncatula]	[more]
gi\|703117265\|ref\|XP_010101339.1\|	1.2e-31	82.61	Ankyrin repeat-containing protein [Morus notabilis]	[more]
gi\|593331305\|ref\|XP_007139079.1\|	2.6e-31	78.26	hypothetical protein PHAVU_009G263200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G19250	CSPI03G19250	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G19250.1	CSPI03G19250.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G19250.1.cds1	CSPI03G19250.1.cds1	CDS
CSPI03G19250.1.cds2	CSPI03G19250.1.cds2	CDS
CSPI03G19250.1.cds3	CSPI03G19250.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	PROFILE	PS50088	ANK_REPEAT	coord: 30..62 score: 9
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 7..68 score: 1.
IPR020683	Ankyrin repeat-containing domain	PROFILE	PS50297	ANK_REP_REGION	coord: 12..62 score: 11
IPR020683	Ankyrin repeat-containing domain	unknown	SSF48403	Ankyrin repeat	coord: 10..57 score: 4.4
None	No IPR available	unknown	Coil	Coil	coord: 68..88 scor
None	No IPR available	PANTHER	PTHR24186	FAMILY NOT NAMED	coord: 11..100 score: 1.0
None	No IPR available	PANTHER	PTHR24186:SF8	ANKYRIN REPEATS-CONTAINING PROTEIN	coord: 11..100 score: 1.0
None	No IPR available	PFAM	PF13637	Ank_4	coord: 10..47 score: 9.