CSPI02G19610.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G19610.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 17727945 .. 17728574 (+)
Sequence length324
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAATTATAAATATAATATTTGCTTCAAACTGAAGCCGGCCGGATACAGAGCCCTTGTTCAGTTGTTCTGTTTCTGCCGTCGGTTTCCGCCGCACGATTCCCCATACCACCGCCCTCTGTTTCACTGTCCCCACCTATAAAAGCCCTCAACTTTTCCCCACTCCTCTTTTCAATTCTCATTCTTAATTTTCTCTAAAACAATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGATGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAATTCCAATTTTGTTATAAAATTAAGAAATTAGTGGAAGAGGTCAGATTTTTCTTTTTTAAACTTATTTATCCATCCAAATCAGATTGCATTATAATGGCTTCGTTG

mRNA sequence

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGATGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAA

Coding sequence (CDS)

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGATGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAA
Homology
[Close]
BLAST of CSPI02G19610.1 vs. TrEMBL
Match: A0A0A0LNJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-46
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1 

Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAADA--DALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSPQPYSVEKKIAGDQVEAEIETESAAA A  DALGPAVTRHIVVKSSSSSSSYQSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 108
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 109

[Close]
BLAST of CSPI02G19610.1 vs. NCBI nr
Match: gi|700207440|gb|KGN62559.1| (hypothetical protein Csa_2G360760 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-46
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1 

Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAADA--DALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSPQPYSVEKKIAGDQVEAEIETESAAA A  DALGPAVTRHIVVKSSSSSSSYQSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 108
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 109

The following BLAST results are available for this feature:
BLAST of CSPI02G19610.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19610.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNJ0_CUCSA5.6e-4697.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360760 PE=4 SV=1[more]
BLAST of CSPI02G19610.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19610.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207440|gb|KGN62559.1|8.0e-4697.25hypothetical protein Csa_2G360760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G19610CSPI02G19610gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G19610.1CSPI02G19610.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G19610.1.utr5p1CSPI02G19610.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G19610.1.cds1CSPI02G19610.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G19610.1.utr3p1CSPI02G19610.1.utr3p1three_prime_UTR