CSPI02G08810.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G08810.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 8364180 .. 8366203 (+)
Sequence length414
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTGGTAGTAGATCACAAAGCCAGCATTAATAAAGAAGAACAAGGAGAATAAAATCTGCAGCATAAAAACAGAAGATAACAATAAAAAGATGAGAGGAACTTTATATTTCTTATTGTCATAATTCAAGCTAAAAAGATTGGCACAAGATGGACCAAGTGCCAGACAATAAAAATTGAATGCATACAACTATTTCTCAGACCTTTACAGACTAATTCATTGCTGCAAATATTCTTGCAGATCCCACATAGTTTTCTGATCAAGTTCATAAGACAAAGCGTCAACCATCGACAATAAATTGATCATCTTGGTTGTCTGCCTCAACTCTTGTGCCATTGTGAACAATTCCGTTCACATGATGTAAATTTTGCATCATTTGTGAAATATAATGGTTACTAGCACTAGTATGATCAGAGAGTGCAGAAGTATGAGCAGTCCATTGAGAGACAATACCGAGTAATTGACCGGTAAGGTTTTGCTGCTCGTGGAGAATGCGAGTCTGGATCTGATTCATTTCGACCCGGTGCTGGTTCAACATATTGTCTATCCTATTCTTCCATTCTAACCTTCTCTTGCTGATTCTCTCCTCCCACTCTCTCTCATGATTCAATTTCTCTTCTCTTCTTCTTTCCATCTCCATTCTCAACTTTTCCATAGCTTCCCACTCTTGAATTCTCTGCTTCCTCAACTTATCACGGGCTTTCTCCCTCTCCGCTCTTTGAGCTTCTCCTTCCTCCCATTTTTGTTCCCATTTTTTCTCCATTTCGTATCTTAAACACTCCCACCTCCGACGCTCTTGTTCTCTGTCGACCTCACGTTTCTCAAACTGACCCTCCATATCCTTCAACCGCCCTAGCTGGTTCACGAGAAATCCCCAAGCTTTCTTCTCCAATCTCTTCATCACCTTCCTCTTCTTCTTAAAGTTGTTCTTCTTAGGATCAACTTCTTCACAGAAAAAGCTGTTGTCTCCATCCTCCTTCAGCTGATCATTATCATTAAAGTTTTCTTCCGCTTCGTCCCCATCAAACTCAAACCCCAAACCCATCACCTCATTGTCAACACCATCAATCCCAGCAGTGAAGTTTCCTGCCCCAGAATGTCCCATATGAGCAAAATCCAACATATCCATCTCTCTACTCACCTCCAAAAACTGGTCTACATTCCCCCGGTCACTACTGGAAACAACCGTCAAATCATTATAGCTGCTATTTGCCGCCGCTACATCCCCAAAAACATCCTTATATCTCAAGAAGTTCGACCAATAAGTCACACCCTCCATCCAATCATAGTCTTCCTTGGAATCCCCACCGGAGTTTTCAACCCCGGATTCGGGTTTCTTAATCTTCTGCTTCACAAGCAAATACTGGTGCCTCATATTCTGGACCTTAGTAGAAACATCTTTCCAAGTCCACTGCCATGGATACGCCAAAGAATCTTGAACATGGTGCACAGAGTTCACATAATTTGCAATTGGCCTAAACTTTTTCTCACGGGTTTTCATCTTAGCTAAAGTTCCATCAGATAACATTTCTCCATACTTATCAATCAAAGTCCTCTCCTCAGCTTCAGTCCATTTCTTTCGCTTCGGGGGAATCATCACACCAAAATAACTCCCAATTTTAACACTCAAACAGAATAAAAAGAAAATCCCAGTGATAATTTAAAAAGAAAAAAAAAAACTCAAACCCAGAAGCTTCGCATCAAAGAAAATCAAGGATCCATCAAAACCCCAACTCAAAAACCAAAATCGAAGAAACCCCCCATCGAAAAACCAGCAAATTGAAGCAGAGATTTGTACTTACCTGATGAATTGGAAAGAGAAGGTGACTTTGAGGATAAAATGAAAGTGAATAGTTTTTTAAAAAGGAAATTGAGGTCCAAGGAAGTAGAGCTGATGAAGAAGAAGAAGAAGAAGGGCCCTCAGAGAATTTATGAGAGAAAGTAGAAGGATTTTTCTTTAGAAGCGCAGTAATTGGGGCTTTTTGGTTAAAAGTGGCAGCGCCAAAGACATAAGCCTGAGGAAAT

mRNA sequence

ATGTCCCATATGAGCAAAATCCAACATATCCATCTCTCTACTCACCTCCAAAAACTGGTCTACATTCCCCCGGTCACTACTGGAAACAACCGTCAAATCATTATAGCTGCTATTTGCCGCCGCTACATCCCCAAAAACATCCTTATATCTCAAGAAGTTCGACCAATAAGTCACACCCTCCATCCAATCATAGTCTTCCTTGGAATCCCCACCGGAGTTTTCAACCCCGGATTCGGGTTTCTTAATCTTCTGCTTCACAAGCAAATACTGGTGCCTCATATTCTGGACCTTAGTAGAAACATCTTTCCAAGTCCACTGCCATGGATACGCCAAAGAATCTTGAACATGGTGCACAGAGTTCACATAATTTGCAATTGGCCTAAACTTTTTCTCACGGGTTTTCATCTTAGCTAA

Coding sequence (CDS)

ATGTCCCATATGAGCAAAATCCAACATATCCATCTCTCTACTCACCTCCAAAAACTGGTCTACATTCCCCCGGTCACTACTGGAAACAACCGTCAAATCATTATAGCTGCTATTTGCCGCCGCTACATCCCCAAAAACATCCTTATATCTCAAGAAGTTCGACCAATAAGTCACACCCTCCATCCAATCATAGTCTTCCTTGGAATCCCCACCGGAGTTTTCAACCCCGGATTCGGGTTTCTTAATCTTCTGCTTCACAAGCAAATACTGGTGCCTCATATTCTGGACCTTAGTAGAAACATCTTTCCAAGTCCACTGCCATGGATACGCCAAAGAATCTTGAACATGGTGCACAGAGTTCACATAATTTGCAATTGGCCTAAACTTTTTCTCACGGGTTTTCATCTTAGCTAA
Homology
[Close]
BLAST of CSPI02G08810.1 vs. TrEMBL
Match: A0A0A0LHN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G121995 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-74
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MSHMSKIQHIHLSTHLQKLVYIPPVTTGNNRQIIIAAICRRYIPKNILISQEVRPISHTL 60
           MSHMSKIQHIHLSTHLQKLVYIPPVTTGNNRQIII AICRRYIPKNILISQEVRPISHTL
Sbjct: 1   MSHMSKIQHIHLSTHLQKLVYIPPVTTGNNRQIIITAICRRYIPKNILISQEVRPISHTL 60

Query: 61  HPIIVFLGIPTGVFNPGFGFLNLLLHKQILVPHILDLSRNIFPSPLPWIRQRILNMVHRV 120
           HPIIVFLGIPTGVFNPGFGFLNLLLHKQILVPHILDLSRNIFPSPLPWIRQRILNMVHRV
Sbjct: 61  HPIIVFLGIPTGVFNPGFGFLNLLLHKQILVPHILDLSRNIFPSPLPWIRQRILNMVHRV 120

Query: 121 HIICNWPKLFLTGFHLS 138
           HIICNWPKLFLTGFHLS
Sbjct: 121 HIICNWPKLFLTGFHLS 137

[Close]
BLAST of CSPI02G08810.1 vs. NCBI nr
Match: gi|700206316|gb|KGN61435.1| (hypothetical protein Csa_2G121995 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 8.9e-74
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MSHMSKIQHIHLSTHLQKLVYIPPVTTGNNRQIIIAAICRRYIPKNILISQEVRPISHTL 60
           MSHMSKIQHIHLSTHLQKLVYIPPVTTGNNRQIII AICRRYIPKNILISQEVRPISHTL
Sbjct: 1   MSHMSKIQHIHLSTHLQKLVYIPPVTTGNNRQIIITAICRRYIPKNILISQEVRPISHTL 60

Query: 61  HPIIVFLGIPTGVFNPGFGFLNLLLHKQILVPHILDLSRNIFPSPLPWIRQRILNMVHRV 120
           HPIIVFLGIPTGVFNPGFGFLNLLLHKQILVPHILDLSRNIFPSPLPWIRQRILNMVHRV
Sbjct: 61  HPIIVFLGIPTGVFNPGFGFLNLLLHKQILVPHILDLSRNIFPSPLPWIRQRILNMVHRV 120

Query: 121 HIICNWPKLFLTGFHLS 138
           HIICNWPKLFLTGFHLS
Sbjct: 121 HIICNWPKLFLTGFHLS 137

The following BLAST results are available for this feature:
BLAST of CSPI02G08810.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G08810.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHN0_CUCSA6.2e-7499.27Uncharacterized protein OS=Cucumis sativus GN=Csa_2G121995 PE=4 SV=1[more]
BLAST of CSPI02G08810.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G08810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206316|gb|KGN61435.1|8.9e-7499.27hypothetical protein Csa_2G121995 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G08810CSPI02G08810gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G08810.1CSPI02G08810.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G08810.1.utr5p1CSPI02G08810.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G08810.1.cds1CSPI02G08810.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G08810.1.utr3p1CSPI02G08810.1.utr3p1three_prime_UTR