CSPI02G03830.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATGGTATGATAAAGTCAGTCGAACTTACAGCTCTTTAGTGAAAGATGAATGGCTGGCATTCTTTTCATATCTTCGTACACTGATGAATTAAACTTCAAACCTGACTACCTGCAGTTGATTTAGAAGAGCTTTTTAAAGGCTTTAACATCTACAGAAACTCAAAAGACAGGTCGGCTCTCGCCCAGAACTCCAAAGCAAAGTGTATAGCAGAACAAATTGCGAAGAACTGGTATAATAAATTGCCTTGCAGTGCTGCCATTGAGGGCGACGTCCTTTTGCCATTCAACCAGAGCCAACTTCCTATGTCACACTACTCAAGAAAGTGCGAAGTTAACCTCAATCATACAGTAGATGGGGTTATTTTACCAGTATACGTCCCTAACTCAGCAGATAAACTTATGCTTACTAATTGCACTCATTCTCAGGCTCCGGAGTATTTGGATAATGCAACTTACACAAGGGTAGGTCTTGCTACAAATGAAGACTGTTTAGTGATTGCTTTGGGTACAGATGCCATTAGTGGAAGCTATTCCGCTGGTCTATCTTTGGTTCCACATATTGGTTGGGTTTATTGGCTGGGATTTTTGTTTTTATCAATTCTTTGTTTTGGTGAAGGTGAAAAGCTTTTGTATTCTTTCATTCTTTAAAATTGTTATCTACGATGTATGGTCCATGATTGACCCAAGGAGTCATGTAATGCTTTACACTGAACATCAGCATATTAATATAAAGGATATTTAG ATGCATGGCTTTAACATCTACAGAAACTCAAAAGACAGGTCGGCTCTCGCCCAGAACTCCAAAGCAAAGTGTATAGCAGAACAAATTGCGAAGAACTGGTATAATAAATTGCCTTGCAGTGCTGCCATTGAGGGCGACGTCCTTTTGCCATTCAACCAGAGCCAACTTCCTATGTCACACTACTCAAGAAAGTGCGAAGTTAACCTCAATCATACAGTAGATGGGGTTATTTTACCAGTATACGTCCCTAACTCAGCAGATAAACTTATGCTTACTAATTGCACTCATTCTCAGGCTCCGGAGTATTTGGATAATGCAACTTACACAAGGGTAGGTCTTGCTACAAATGAAGACTGTTTAGTGATTGCTTTGGGTACAGATGCCATTAGTGGAAGCTATTCCGCTGGTCTATCTTTGGTTCCACATATTGGTTGGGTGAAAAGCTTTTGTATTCTTTCATTCTTTAAAATTGTTATCTACGATGTATGGTCCATGATTGACCCAAGGAGTCATGTAATGCTTTACACTGAACATCAGCATATTAATATAAAGGATATTTAG ATGCATGGCTTTAACATCTACAGAAACTCAAAAGACAGGTCGGCTCTCGCCCAGAACTCCAAAGCAAAGTGTATAGCAGAACAAATTGCGAAGAACTGGTATAATAAATTGCCTTGCAGTGCTGCCATTGAGGGCGACGTCCTTTTGCCATTCAACCAGAGCCAACTTCCTATGTCACACTACTCAAGAAAGTGCGAAGTTAACCTCAATCATACAGTAGATGGGGTTATTTTACCAGTATACGTCCCTAACTCAGCAGATAAACTTATGCTTACTAATTGCACTCATTCTCAGGCTCCGGAGTATTTGGATAATGCAACTTACACAAGGGTAGGTCTTGCTACAAATGAAGACTGTTTAGTGATTGCTTTGGGTACAGATGCCATTAGTGGAAGCTATTCCGCTGGTCTATCTTTGGTTCCACATATTGGTTGGGTGAAAAGCTTTTGTATTCTTTCATTCTTTAAAATTGTTATCTACGATGTATGGTCCATGATTGACCCAAGGAGTCATGTAATGCTTTACACTGAACATCAGCATATTAATATAAAGGATATTTAG
BLAST of CSPI02G03830.1 vs. Swiss-Prot
Match: UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15 Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. Swiss-Prot
Match: UGPI3_ARATH (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana GN=At5g19250 PE=1 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14 Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. Swiss-Prot
Match: UGPI2_ARATH (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana GN=At5g19240 PE=2 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06 Identity = 40/134 (29.85%), Postives = 66/134 (49.25%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TrEMBL
Match: A0A0A0LGC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021640 PE=4 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 1.6e-77 Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TrEMBL
Match: A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 2.1e-69 Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TrEMBL
Match: W9S359_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002452 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 8.3e-21 Identity = 61/166 (36.75%), Postives = 93/166 (56.02%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TrEMBL
Match: A0A0A0LIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021650 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20 Identity = 53/136 (38.97%), Postives = 85/136 (62.50%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TrEMBL
Match: B9RF49_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1431380 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19 Identity = 57/157 (36.31%), Postives = 91/157 (57.96%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TAIR10
Match: AT3G06035.1 (AT3G06035.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 83.6 bits (205), Expect = 1.4e-16 Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TAIR10
Match: AT5G19250.1 (AT5G19250.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15 Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TAIR10
Match: AT1G54860.1 (AT1G54860.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 78.6 bits (192), Expect = 4.6e-15 Identity = 44/143 (30.77%), Postives = 79/143 (55.24%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. TAIR10
Match: AT5G19240.1 (AT5G19240.1 Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07 Identity = 40/134 (29.85%), Postives = 66/134 (49.25%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. NCBI nr
Match: gi|700205774|gb|KGN60893.1| (hypothetical protein Csa_2G021640 [Cucumis sativus]) HSP 1 Score: 297.0 bits (759), Expect = 2.4e-77 Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. NCBI nr
Match: gi|659070380|ref|XP_008454795.1| (PREDICTED: uncharacterized GPI-anchored protein At5g19250-like [Cucumis melo]) HSP 1 Score: 270.8 bits (691), Expect = 1.8e-69 Identity = 133/145 (91.72%), Postives = 139/145 (95.86%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. NCBI nr
Match: gi|150036257|gb|ABR67420.1| (GPI-anchored protein-like protein [Cucumis melo subsp. melo]) HSP 1 Score: 270.0 bits (689), Expect = 3.1e-69 Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. NCBI nr
Match: gi|703135332|ref|XP_010105845.1| (hypothetical protein L484_002452 [Morus notabilis]) HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20 Identity = 61/166 (36.75%), Postives = 93/166 (56.02%), Query Frame = 1
BLAST of CSPI02G03830.1 vs. NCBI nr
Match: gi|659070382|ref|XP_008454803.1| (PREDICTED: uncharacterized GPI-anchored protein At5g19250-like [Cucumis melo]) HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20 Identity = 52/136 (38.24%), Postives = 84/136 (61.76%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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