CSPI02G02520.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GACTTTTTCCCATGAGAATAATAATAATTACCCCACAAAATCCCCTCCTTTTGATAACACCCAAAATCATTTCCATTTCCATTTCCATTTCTCACCCCATCTTTCACTTTTCTTTCAGATTCCCAAGAACAAAAAAATAAGAATTAAATTTTAAAGAGAAAAAGAGAAGAAGAAATTCAAGAATCAATCCCATCTCTTCTTCCTCAACTTGCCACTTACCATTTGGCATCGTAAAGACAAAATTCTCTGTTTCTCTTCTCACCGCCACAGGGATTCTCCTTCTCTCCGCCATTCTTCCTCTACTCCCTTCACAACACCCACACCCAACTGGGATTTTCTTCTTCTGCTTCTTTCCCATCTCCCCATTTTTTCAAAATCTTCTAATTTATTCGCTGTTGGCTTCTTACTTTCTTTTCTAGACGTCGCCCATGGATTTAAGCCGGCGGAGAGCGGCGGTGGCGGCCAAAGGGAACGTGGTAGCTGGGTCTGTGTGGGAGAGTAGAATCAGGTTCGATGAAGTCAGAGGTGGGATTAAGGTTTTTAATGGAGACGATGAAAATGCTGAATGTGGGATTCCGACAACCGCCGCTTCCGCGGGCAGCGGAAGGAGGAAGACGTGGAAATCTGATGAGGGTTTTAACCCGATTCTCATTGCGGAGGAAAAACCAGAGTCGTCGCCCAGTAGCGGCGATGAACAGAGTCGGAAAAGTCCGACTCCTTCACGGAGATTGAGATCCAACAGTAGTCCGAACAAGCCAGTTCAAGTTTCCGGCGAGAAAATAGAGAGAAACTCAACGAGGAAGAAGACTGATCAATCTCGTAAATCGGCTGTTGGGCTTACCAAACCACCGACGAATGGAATCGGAAAAACCTCGTCGGAGAAAAGTTTCAAAGAGTCAAACGAATGCAGAGAGAAAGTGATTTCGTCTTCCACGTCTCAAGATTTCTTCGATGCATTTGAAGAAGAGATTGAGAAAGAAAGCTTCGACGTTAAGGAAATCAATTTACCAGAACGGAAGAAAATCATTGCACAAACTTTCCCGGGAAACAAACAGAAATTACAGACATTAAGTAAGAAAAGTTTCCTTCACTCTATATCCCAAATTTCGATGTCAAATTTCATTTCACCTAATTCATGAAATCTTTGATGTTTTTCAGTGGATTTGATAATGTGGAGAGATTTTTCAAGATCCGGTCTGGTTTTTGGAGTGGGAAATTTGGTTATAATCCTCTCTTGTTTTATCAAAAACATCAATATCAGGTAGAAGAAAAATTCCAAATCCGCCATTGTTGAGAGGAAGAAGAAAATGGGTTGTTAAGTTCTATTTTTTTTGTGTGTGTGTGTGTGTTTTGCAGCCTTATCAGTTTGATTTCGCATATGGGTCTTCTTTATCTGACTGCCATTTTCGTCCATAGTTCCATTTTTGGGAGGTATGATCTTAATTAATGGGTTTTCTTTTGTTTCTTTCATAACTAGTTTCTGAGAATTCAAAAGAAGATCTCTGATTCTCTATTTGATTTTCCCGGGAAAATTACAGGAGAAAAAGGATTGATTCTGATGATGAAAATTTGGTGGTTGAAGAAGAAGATATGATTCGATTTGCTAAACGGTTAGTTCCTTTTGTGAATGAATTGCTGCAAAATCTCAAGGCTCTGTTCCGTGGAGATCCCTCTGCCACCATGAAGGTAACTTTTCTTTAATGGCCAAATTATATTGGAAATAGTTTTCTCATTTCTTAAATTATTATACCTTTTTAAAAGTAAATACATCAATTCATACCTTAGGGTAGGTTATAACAATGAGTATTATTATGTTTGGTAAGGTATTATAGTTTGTAATTTAGCACATATGAACCTAACTCAATTTCGTTCTTAGTTAATTGGAATCATATTCGATCATAGAGTGGAAAAGTAGGAGGTTTTACTGCTTATGACTATCTCTTTTTTCATTTTCATTGAGGGTAATTTACTTTTAAATTTATTATTTTTGTAATTTTGAAAATATAAGTTGCCAATTATCATAAATTTTCTTTTTACTATTTTTCAAACTCCCCTAGAAAAATCCACTATTATATAAAAAAATAGAGATTTATTTTTCCAAAATTTTGTTTCTATAATTTTTCATAAATATGCCAATATTTTCATTGAAATTTTCATAAAATTATGAATTCGATATTTTGAAAACGTTGATATTTTAAACCTTCATTCTAACAAAAGTTAAAATTCTTATAAATCTCATAATGTTTTTTTATTCCTTGAAATTGAATGATCCAACTTTGAGGTGGTAGTTATAGCTATGATGAAAATAGGGTTTTAAAAGGCAGAGATGGTTAGAATTTAGCATTTAAATATTTTATGGTAGGATTTAATAATGAAGAAACAAAGTGGACTGTTTGATTTCTAATTGAGTGTCGGTCATATATTATATATATATGTGTGTGTATTGAATTTATGCAGATGATATTCAAACATATGAAATTCTTTTTCTTCTTTAGATTTTTAGATTTTCAAATATATCAGAACATATCAAAATTTCAAATTTTTTTGTCGTCTCTATCGATAACGAAGTTATCGATCAACACCAATAGAAGTCGAACAGTGTCTATAAATGTCTATTGTTGATAATTTTTTAAAGTAGTCATGCTCATGTAGAATTCAAATCTCAAAATAATCTCGTTCCTTAGATAATCTCTCTAATTTAGGACAAACCATTAAAATCATAGTGAAATATACTAAATATGCAAGTGGCAATTGTAATGCTTAAACTAGCTGAAAGGTATGTCAAACCTATCTTAACTTTATTGGAAAGGCTTTAATATTTTAAGGATGAATGAAACTTTTCAAGTATTATAAAGATAAAAGCAAAAGAGAACAAAAATAGTTTTTATTTAGAGAGTATACTATACAATACTTTTCTTTTGAGTTATATAATTATTGGGCTAGATGTGGAACAATAAATTTTAATAACTATATTCTATCGTGGGTTGATATGAAGTTAATTGAGTTTCGTGAAATTAGTTGAGGTGTGATGCACACAATTCAAATCTTATTTATAGAAGTTTGGCTTGAATTATGAGCAACATCATTATAATATTACATGATATTGTTTAATGTTCGGAATGTGAATGTGTAGGTGGGTGTGTTGCTGTTTGTATTGGCAAAGTGGGGTAGCTTCATAACCCTTTGGAATGTCCTCAAAATTGGTAACTTTTTTATTCCCTATTATTCACTATTATTCACTTCTCTCTCTCTTTCTCTTCTGTCTTTTCAAACTCAATCCTATGCCCATCAAATGATTCACTTTTTTCTTTCTTTCAAAACTACTATTTTAATATCTATCTATGGTTTAACTTATGAGGTAAATGGCTTAAATAGTAATTTGATCTTTGTTTTTAACTATTATATACATTACCAAGTTTTTGCTTCATTCTTTGTTTTATGTATGTATTCTTGAAATTCTCTCTCTCAGACGTCATTGTGTACATCTAACTTCTAACCTATTCTTGTCCATCTTGCTTCACCTCCCATTGAAGTTTCTAAATTAGTTGTTTTCCTTCCTACTTCATTTCTTCATAACAATCCTCAAATTATGGTTGCATAAATGTTTCATTTCCCACTTGCAATATTATCTCAACATTTTGTATAACCTAATCTGGAATGTAAATTGTTGTTACTAGTGGCACCACCCATTAGTAATAGGGTTTGTTTCAATAGCCAAACCGAATCAAATTGTAAATTTCAACTTTGGATGTGTATGTACATAATTCACTTTTTACCATTAGAAGCCCATAATTTTATAATTAGAATATTCAAATAAAATATTTTTCCTTTGGGTTTATGTATTTGTTTTTATTAATTCTGACAAAGTGATGTACTTGATTTGGCTGACAGGATTCATCGGGGTTTTCACACTGCCCAAATTAATTACCCACGGTAAAAAAAAAGAAAAGAAACCTTCTTCACTGACTTTGCTTTTTTACTTTTCTTTTGTTTGATACGTCTTGTCGGGGTTATAATTTGAAACGGCCGAGTACAACAAAGCACCGTACGCATTGTCTTTTGGTTCGTCGATTTGTTTGACGGGTCTGACTCCCTACCCCCATCCTGACCGTCCTTTTTTGTCCCTTCAAATAACGGCTACGTTTCCCCCTTCACATCACAATCACAAAACTCTAATAAAATTCCATCAATTTCTTTTTCACTAAAAAATGAAGAAAATTTTTATATTATATAAAAAAAGAGAATTTTCTTTCTTTTACTCATTTTATACGTCACCTGGGTCCCACGTCAGCCTTCACGAGATGGTTTCAGAAATTTTATTTTGTTTTTTATTTCTAATTTTTGGGAAAAGAAAAAATAATTTATTAATTTCTTTTGTCGGTGATTTCTTTTTCTTTCCATAGGTTTTCCTGTCGGATGGTTTTGTTTGGATTTTAAAGAAAAGTTTATTGATTCTTTGAATTTGGTCCTTCTCTTTTAAAACAAGTGTTCTATTATTTCTCTTTTTTTTTCCCCTCAAAATTATTAAATTTTAGTTTTTGAAATTTGACTTGAATTTTGAAAACATTGGTTGAATGTATATAACTAATCAAGAAATTTAGAGGTGGGACTTGTATTCGTGGGCTATCTATGTTTGGTTTCTTCCATTCTCCAAAGAAGAAAAAGAAAAAACCAATCCTTACCTCACTGCTAAGGTTCCTATGTCTTTACCTAGGGAATTATTAAAGCCCATAGGAGTGGGCTGTCACAAACTAACCACCATGTGACTCTTTTTTTAGCCACTACTTAACCTTTGGGAGTTGTTTGACCCTCTAACCTAAGGGGAGGACTACCCTTCCCTAAGTATTTGCTATATGAACACACACTTTAATTTTGGGATTTTATCTACCTTCACTCAAAATTGTGAAGCTCACTTTTTATACTTTAGATTATCTCTCTAAGTTTCTATGTTATTTTCATTTATGTTATCTATGATTATGTGGCTGTCTAAGAAAAAATCAAGCTCTTTTCATCACTCTCGTACTTATAATACATAGGGTAATTTAACCGAATCTTGAAGTGTTTGTAATCAAAGCCACAAGCTTCTTTTACATCACTTTTTGAACTAACTATATGGCTGATATTTGCGTTCTTACGAGTAATGAATATTGTGGGGTTCTCTATTGTGAAATTAGGTGAACACTGGTGGAAACTTTGTGGGAGTTCTTGGAAGTTATGTTCCCACAAGAGAGGTGTGTTCATCGCCATCTTTTTTCTCGTATGGAATTTCTCATCGACTCTATATCGCGTATGGGCAGGTAGACGTTCTGTACTTAAAACCTGAGTTTTAGATCATAAAATGAATTCCGTGAACATAGTTTAAACATGGTTGACATTATGTTTTATATTGTAATTGGAAGTTTGATTGTGGCAGCTTTCATAGTGTTGGTTAGCTTTCGGTACTACCAGGAGTCTCCGGAGAGAGATGTTTGGGTTAAAAATGGAGAAGTAGCTTCAAGAAACAAGACCATGTCGACGAGTTCAAAGCTCAAGAAACAATATTGAGCAATTTTGATGCCTTTTTTCTCTGTTATTTATAAGATAGTTAAAAATTACCATGTAAATTCATGCACACTATGGTAGAAATCCATCTGCTTGTATCTTAGGAGAAAAAGAATGGAAAATGTCTTTTATTTTTTTTTAATTTCTTCCTTTTTCAAATTCAATAATCTCATTTTATTTTATCT ATGGATTTAAGCCGGCGGAGAGCGGCGGTGGCGGCCAAAGGGAACGTGGTAGCTGGGTCTGTGTGGGAGAGTAGAATCAGGTTCGATGAAGTCAGAGGTGGGATTAAGGTTTTTAATGGAGACGATGAAAATGCTGAATGTGGGATTCCGACAACCGCCGCTTCCGCGGGCAGCGGAAGGAGGAAGACGTGGAAATCTGATGAGGGTTTTAACCCGATTCTCATTGCGGAGGAAAAACCAGAGTCGTCGCCCAGTAGCGGCGATGAACAGAGTCGGAAAAGTCCGACTCCTTCACGGAGATTGAGATCCAACAGTAGTCCGAACAAGCCAGTTCAAGTTTCCGGCGAGAAAATAGAGAGAAACTCAACGAGGAAGAAGACTGATCAATCTCGTAAATCGGCTGTTGGGCTTACCAAACCACCGACGAATGGAATCGGAAAAACCTCGTCGGAGAAAAGTTTCAAAGAGTCAAACGAATGCAGAGAGAAAGTGATTTCGTCTTCCACGTCTCAAGATTTCTTCGATGCATTTGAAGAAGAGATTGAGAAAGAAAGCTTCGACGTTAAGGAAATCAATTTACCAGAACGGAAGAAAATCATTGCACAAACTTTCCCGGGAAACAAACAGAAATTACAGACATTAATGGATTTGATAATGTGGAGAGATTTTTCAAGATCCGGTCTGGTTTTTGGAGTGGGAAATTTGGTTATAATCCTCTCTTGTTTTATCAAAAACATCAATATCAGCCTTATCAGTTTGATTTCGCATATGGGTCTTCTTTATCTGACTGCCATTTTCGTCCATAGTTCCATTTTTGGGAGGAGAAAAAGGATTGATTCTGATGATGAAAATTTGGTGGTTGAAGAAGAAGATATGATTCGATTTGCTAAACGGTTAGTTCCTTTTGTGAATGAATTGCTGCAAAATCTCAAGGCTCTGTTCCGTGGAGATCCCTCTGCCACCATGAAGGTGGGTGTGTTGCTGTTTGTATTGGCAAAGTGGGGTAGCTTCATAACCCTTTGGAATGTCCTCAAAATTGGATTCATCGGGGTTTTCACACTGCCCAAATTAATTACCCACGGTGAACACTGGTGGAAACTTTGTGGGAGTTCTTGGAAGTTATGTTCCCACAAGAGAGGTGTGTTCATCGCCATCTTTTTTCTCGTATGGAATTTCTCATCGACTCTATATCGCGTATGGGCAGCTTTCATAGTGTTGGTTAGCTTTCGGTACTACCAGGAGTCTCCGGAGAGAGATGTTTGGGTTAAAAATGGAGAAGTAGCTTCAAGAAACAAGACCATGTCGACGAGTTCAAAGCTCAAGAAACAATATTGA ATGGATTTAAGCCGGCGGAGAGCGGCGGTGGCGGCCAAAGGGAACGTGGTAGCTGGGTCTGTGTGGGAGAGTAGAATCAGGTTCGATGAAGTCAGAGGTGGGATTAAGGTTTTTAATGGAGACGATGAAAATGCTGAATGTGGGATTCCGACAACCGCCGCTTCCGCGGGCAGCGGAAGGAGGAAGACGTGGAAATCTGATGAGGGTTTTAACCCGATTCTCATTGCGGAGGAAAAACCAGAGTCGTCGCCCAGTAGCGGCGATGAACAGAGTCGGAAAAGTCCGACTCCTTCACGGAGATTGAGATCCAACAGTAGTCCGAACAAGCCAGTTCAAGTTTCCGGCGAGAAAATAGAGAGAAACTCAACGAGGAAGAAGACTGATCAATCTCGTAAATCGGCTGTTGGGCTTACCAAACCACCGACGAATGGAATCGGAAAAACCTCGTCGGAGAAAAGTTTCAAAGAGTCAAACGAATGCAGAGAGAAAGTGATTTCGTCTTCCACGTCTCAAGATTTCTTCGATGCATTTGAAGAAGAGATTGAGAAAGAAAGCTTCGACGTTAAGGAAATCAATTTACCAGAACGGAAGAAAATCATTGCACAAACTTTCCCGGGAAACAAACAGAAATTACAGACATTAATGGATTTGATAATGTGGAGAGATTTTTCAAGATCCGGTCTGGTTTTTGGAGTGGGAAATTTGGTTATAATCCTCTCTTGTTTTATCAAAAACATCAATATCAGCCTTATCAGTTTGATTTCGCATATGGGTCTTCTTTATCTGACTGCCATTTTCGTCCATAGTTCCATTTTTGGGAGGAGAAAAAGGATTGATTCTGATGATGAAAATTTGGTGGTTGAAGAAGAAGATATGATTCGATTTGCTAAACGGTTAGTTCCTTTTGTGAATGAATTGCTGCAAAATCTCAAGGCTCTGTTCCGTGGAGATCCCTCTGCCACCATGAAGGTGGGTGTGTTGCTGTTTGTATTGGCAAAGTGGGGTAGCTTCATAACCCTTTGGAATGTCCTCAAAATTGGATTCATCGGGGTTTTCACACTGCCCAAATTAATTACCCACGGTGAACACTGGTGGAAACTTTGTGGGAGTTCTTGGAAGTTATGTTCCCACAAGAGAGGTGTGTTCATCGCCATCTTTTTTCTCGTATGGAATTTCTCATCGACTCTATATCGCGTATGGGCAGCTTTCATAGTGTTGGTTAGCTTTCGGTACTACCAGGAGTCTCCGGAGAGAGATGTTTGGGTTAAAAATGGAGAAGTAGCTTCAAGAAACAAGACCATGTCGACGAGTTCAAAGCTCAAGAAACAATATTGA
BLAST of CSPI02G02520.1 vs. Swiss-Prot
Match: RTNLS_ARATH (Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2) HSP 1 Score: 208.0 bits (528), Expect = 2.1e-52 Identity = 104/218 (47.71%), Postives = 149/218 (68.35%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. Swiss-Prot
Match: RTNLQ_ARATH (Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 1.5e-29 Identity = 76/212 (35.85%), Postives = 120/212 (56.60%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. Swiss-Prot
Match: RTNLR_ARATH (Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2) HSP 1 Score: 113.2 bits (282), Expect = 7.2e-24 Identity = 95/363 (26.17%), Postives = 175/363 (48.21%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TrEMBL
Match: A0A0A0LG57_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_2G009500 PE=4 SV=1) HSP 1 Score: 849.7 bits (2194), Expect = 1.6e-243 Identity = 440/444 (99.10%), Postives = 441/444 (99.32%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TrEMBL
Match: A0A022R2B2_ERYGU (Reticulon-like protein OS=Erythranthe guttata GN=MIMGU_mgv1a004061mg PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64 Identity = 189/534 (35.39%), Postives = 281/534 (52.62%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TrEMBL
Match: A0A022R660_ERYGU (Reticulon-like protein OS=Erythranthe guttata GN=MIMGU_mgv1a004061mg PE=4 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63 Identity = 190/536 (35.45%), Postives = 282/536 (52.61%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TrEMBL
Match: A0A0A0LTX3_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_1G269900 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56 Identity = 146/356 (41.01%), Postives = 202/356 (56.74%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TrEMBL
Match: V4SBM5_9ROSI (Reticulon-like protein OS=Citrus clementina GN=CICLE_v10028046mg PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53 Identity = 113/232 (48.71%), Postives = 157/232 (67.67%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TAIR10
Match: AT5G58000.1 (AT5G58000.1 Reticulon family protein) HSP 1 Score: 208.0 bits (528), Expect = 1.2e-53 Identity = 104/218 (47.71%), Postives = 149/218 (68.35%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TAIR10
Match: AT2G20590.1 (AT2G20590.1 Reticulon family protein) HSP 1 Score: 132.1 bits (331), Expect = 8.4e-31 Identity = 76/212 (35.85%), Postives = 120/212 (56.60%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. TAIR10
Match: AT4G28430.1 (AT4G28430.1 Reticulon family protein) HSP 1 Score: 113.2 bits (282), Expect = 4.0e-25 Identity = 95/363 (26.17%), Postives = 175/363 (48.21%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. NCBI nr
Match: gi|449442977|ref|XP_004139257.1| (PREDICTED: reticulon-like protein B18 [Cucumis sativus]) HSP 1 Score: 849.7 bits (2194), Expect = 2.2e-243 Identity = 440/444 (99.10%), Postives = 441/444 (99.32%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. NCBI nr
Match: gi|659070755|ref|XP_008456496.1| (PREDICTED: reticulon-like protein B21 [Cucumis melo]) HSP 1 Score: 825.9 bits (2132), Expect = 3.5e-236 Identity = 428/447 (95.75%), Postives = 434/447 (97.09%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. NCBI nr
Match: gi|604328874|gb|EYU34356.1| (hypothetical protein MIMGU_mgv1a004061mg [Erythranthe guttata]) HSP 1 Score: 254.6 bits (649), Expect = 3.2e-64 Identity = 189/534 (35.39%), Postives = 281/534 (52.62%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. NCBI nr
Match: gi|848881535|ref|XP_012841125.1| (PREDICTED: reticulon-like protein B21 isoform X2 [Erythranthe guttata]) HSP 1 Score: 254.6 bits (649), Expect = 3.2e-64 Identity = 189/534 (35.39%), Postives = 281/534 (52.62%), Query Frame = 1
BLAST of CSPI02G02520.1 vs. NCBI nr
Match: gi|604328873|gb|EYU34355.1| (hypothetical protein MIMGU_mgv1a004061mg [Erythranthe guttata]) HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63 Identity = 190/536 (35.45%), Postives = 282/536 (52.61%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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