CSPI02G02420.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAACATTTATTTAATCTTGTTGGTGAAAGGAGGAGGAAGAAGAAGAAACAGAGTTCAGAGGAGCTCTCTCAATCCATTTTCATGGCGGTAGCAACTTTCTTTCCTTCTCAAACTTCATATAAAAACCGCCATTATCTTTCTCGCGACATCCAATTTCGGTCTCCTCTTCGTTTGTCCACTCCTCGTTCCATCCTTTCCACCATTCGAGCAAGCTCGGCTCTCGTTCTTGAGTCGGTAAGCTCCACTTTATCATTCGTATTTCAATCATCGTTCATAATCCCCCCTTTTTATGTTGAATTGTATCATTATTTCTCAATTTCCATCACGCGTTTAATTGTTAGTGAATTTTTTGTTTAATTTGTAATTGTAACTCAATTTCGAACTGTTTCATAAGGGTGTATTTGAAATTAGTATTACTTTATGTTGCTATCAGGATTCAGGTATTCAACAGGATCAGAATTTGAAAATTGACGTGTTTTCATGTCCGGTTTGTTTTGAGCCATTGTTGAGAAAAGGTCCGCCAGGTTTTAACTTGTAAGTTGACTAATTGAGATTTCTATCATCTTTTGAAATTTATCTTGTTACATGACATTATAATTTGATCTGGGTGAAGTGGAAAATTTGCAGGCCAGCTATTTATAGGTCTGGTTTCAAGTGTAGAAGATGCAATAAGTCATATACCAGCAAAAACATCTTTTTAGATCTCACAGTTACTTCTGGAATGAAGGAATATGTAGAAGTCAAACCTGGGGGAACTGAGCTGTTTCGGTATCCGTTTGATATTTCCTCTTCATTTTCTCTTCTCTTTTTTCCTTTTACTGCTTAGTTTTCCTACTTTGTTTCATCTTTTTAGTGTTAGATGATGTAGTATTAAATTTATCTTTAACCATTGGCTTAAGCTTTTAGGGTAATCAATGATTTGATATAGCATTAGATTAGGTGGCTGTGGTCTAGAAAGTCATGTGTTCAAACCCGACAAGTCAGTGGAGTGTTAGAATAATATAATACTAAATTTACTTTCACCCATGGGATTAAGCTTTTGGGTCAATGTTAAATTTATGTCATTCATTGGTCTAGCTAAAGGAAGGCATACAGTATTATTGCAATTTCCCTCCTTCAGGTGACAATTCTGAACTGCTTCTGATTTTTGAACTTTATAGGAGTCCCCTTGTTTCATATCTATACGAAAGAGGATGGCGTCAAAACTTCAACCAAAGTGGTTTCCCAGGCCTTGACGAAGAAGTATGCTCTGTCTCAATAATAACACTATCATTCAAATGGACGTAGATTTTAGATTTGATATTTTGATGCCATTCAAAAGATTATTCGTGGAGAAAAACAAGTCTAATTGCAATGTTACATAATTTTCCCTGGTATTTTTCGTTGGACAAAGTGACTATAAGTTGATACTTTTTCTGTAACTATACAACATTGCAGTTTAAAATGGCCATGGAGTATTTTAAATCTGTTGAAGGTGGTCTTTTAGTGGATGCAAGCTGTGGTAGTGGTTTGTTTTCCAGAAAATTTGCAAAATCTGGGTCCTTCGCAGGTGTAATTGCTCTTGATTTCTCTGAGAATATGCTTCTTCAATGTTATGACTTCATTAAGAAAGATGCTACTCTCTTGAACAGGTAATTTTAATGACTTTTATTCTCTATTAGTTTAGTTCCTTAGAACTGCAATCACTATTATATTCTGCTGGCTTGTGTATTAAGTGAAGTCCAATTCACTTGCAAGAAAGGAAGGTTATATTAATTAGCTCATCTTCTTTTGGAAAATATGCAGTAATCTTGCTCTTGTGAGGGCAGATATCTCTAGGCTTCCCTTTTCATCAGGATCAGTAGATGGTGTTCATGCTGGAGCAGCGTTGCATTGTTGGCCATCTCCTTCCAATGCTGTAAGCATTGTCTTGTAGAGAACATATTCTATTATTTGATTTCCTACCAGTAGTCATAATCCGCTGAGTTCAACTATGTTTTTTTTTAAAAGGAGACAGAATTTTCATTGATAAACTGAAATGACAGGACGATTACAAAGAGACAGCAATGAGACAACAACAATCCAAAATAAAGACCCGAATATGAAAATAAAAAACAGCTACCCCAAAAAGAAAAAAAAACAAAACTCAATTTAAACTAGCTGACCAACAACCAACAAATTCAGCAATAGTACAACAAAAACAACCCATAATCAATGCAAAAACAAAACTTTCAACTTCAAAAAAGCGTGGATAGAAAAAATCTTGAATTTCAAGAGGAACAAAACAGGGCTCGAGTAGATTCATGAGGTAATCTTCTAGGAGACAGATGTCTCGCAAAATCTTGAACAACTTCAAACCAAGATTAGATCACAATCTTTAACAATGGACCTTAGTTGAGCTGGAATTTTGGAAAGGGGCAATGGGATTCGATTGGAAGGATCTTCAAAAACTCTTCCTCAAAAAAACATAGTATTTAAAACTCCTCCCAAATTGTTTAATGCCTCCGGCAAATCTTGAGCTAATCCTTCCTTGGCGCCAACTAATTCTTCACTACACACACTAAGGTGAACCAAACTCGGGATCTAACCATGTTACAGATTATCACTCTTGAGTCATTGAATTCATCCCATTATTTCCACGATTGAAATTGTCTTCTCAACCAGCTTGCGTGATTGAAATCATCTAAAGTTTCTCACTTCATGTCAAAGCCTTACTCTTCACAATAGTTAACATGGGACTCGATTCATGTGGAACAGTGCACGTCAGTGTGTCTGAATTAATGGCAGGTTCATTGGCTAATTGGTATTTTGATACATCTTCTTGACTAGTTCATTCCTTTTAGGAAGTTTTAGTTGAAACATGTAGGAATTAGCTCCTGGTTATTTATATATATTGATTCTATGGTTAATATTTTTCCACTTTTTTTAGTTTTAGTAATGTGTTTCTTTGACTATTCTCATCAGATTGCTGAGATCACTCGTATAATGCGGAGTGGTGGAGTATTTGTGGGAACCACTTTTTTGCGGTACACTTCATCTACTCCCTGGTACCTAAGATTTTTAAGAGAGGTATACTCTTAATCTATCCTTGCCCTATCCTTACTTTTTTGTATATTTGATCAGTAGAAAATTTAGTTTCACTAGTTATCAGGAAGCAGCTATGATTGAAAATTTTGTGTTATCTGATCAATATTCTTGGGTCATAAACTTGGTAATCATGCATTTGCATATATGAAGTCCGTCCTTGCGTAATTTCTAATAGCTCGCAATTTAAGGTGGTATAGACAAGCTAGCTTTCTAAGTGGTATATTGGACTTCTTGCTGGCTTATGTTTTCCAGTTTTATTGGACATAATATCGGTATTTTTCAGTTTTATTGGACATAATATAGATATTTTTCAGTTTTATAGAATTTCTAACTATTTGATCTTATGGTAAATAAAGAGCATTGAATTTAATAAAGGAGTTCAATTCATGATAATCGCATACATAGAATTAATGTTCTACGAGTTTTATTGACACCCAAATATTTTAGGGTCGTGTAGGTTGTCCCTCAAGTAGCTGACCCAAATGGGGGTGGGGCAAAGTAGGAGGAACATATATTGTAAAACATAACCTTTTTCTTAGATAAAAGGATTCGAGATGACATCCTCCTCCATCATTTCATAGATACCAACCTCTACGCTGTGTATAATCCTGAATCCTGTCATAATCGGTCAATTATTCAAAATACCAACTGATCCCAAACCAAGCATATGTGAAATTGCTTTTGACCATCTTATGATAAACAATTACATTTTAACGACGCATAAGATTCTAGGTTTCTCTAACTCTGAACAATGCCATGATTTTCAAACTTTCTTGAGTATGAAGATGGATTTGTGAGCGTTATAAGTTTGTGTGTGTTCAGCAGCGTGGTTTTCAGCCCTATGGCTACCTAACGGAGGAAGAAATAGAGGAACTGTGCAAATCCTGCGGTCTGATTAACTATTCAAGCAAAGTTCAACGATCTTTCATTATGTTCTCTGCCCAGAAGCCTTGAAAGTAAGTTCTGATCAATCTCATCCTCATTATGTTGTCTATATTCAGAATCAAACTTTAAAGAATTATATTGATAAGTTAATACAATAGCTTGTAAATTGTTGGAACTGAAGAATAATTGATTGAATTGAATATAATTAAAAATTGAGAAGAGATGTGTAATGATGTCCTCTTCATTTGGTTGGTTTTC ATGGCGGTAGCAACTTTCTTTCCTTCTCAAACTTCATATAAAAACCGCCATTATCTTTCTCGCGACATCCAATTTCGGTCTCCTCTTCGTTTGTCCACTCCTCGTTCCATCCTTTCCACCATTCGAGCAAGCTCGGCTCTCGTTCTTGAGTCGGATTCAGGTATTCAACAGGATCAGAATTTGAAAATTGACGTGTTTTCATGTCCGGTTTGTTTTGAGCCATTGTTGAGAAAAGGTCCGCCAGGTTTTAACTTGCCAGCTATTTATAGGTCTGGTTTCAAGTGTAGAAGATGCAATAAGTCATATACCAGCAAAAACATCTTTTTAGATCTCACAGTTACTTCTGGAATGAAGGAATATGTAGAAGTCAAACCTGGGGGAACTGAGCTGTTTCGGAGTCCCCTTGTTTCATATCTATACGAAAGAGGATGGCGTCAAAACTTCAACCAAAGTGGTTTCCCAGGCCTTGACGAAGAATTTAAAATGGCCATGGAGTATTTTAAATCTGTTGAAGGTGGTCTTTTAGTGGATGCAAGCTGTGGTAGTGGTTTGTTTTCCAGAAAATTTGCAAAATCTGGGTCCTTCGCAGGTGTAATTGCTCTTGATTTCTCTGAGAATATGCTTCTTCAATGTTATGACTTCATTAAGAAAGATGCTACTCTCTTGAACAGTAATCTTGCTCTTGTGAGGGCAGATATCTCTAGGCTTCCCTTTTCATCAGGATCAGTAGATGGTGTTCATGCTGGAGCAGCGTTGCATTGTTGGCCATCTCCTTCCAATGCTATTGCTGAGATCACTCGTATAATGCGGAGTGGTGGAGTATTTGTGGGAACCACTTTTTTGCGGTACACTTCATCTACTCCCTGGTACCTAAGATTTTTAAGAGAGCAGCGTGGTTTTCAGCCCTATGGCTACCTAACGGAGGAAGAAATAGAGGAACTGTGCAAATCCTGCGGTCTGATTAACTATTCAAGCAAAGTTCAACGATCTTTCATTATGTTCTCTGCCCAGAAGCCTTGA ATGGCGGTAGCAACTTTCTTTCCTTCTCAAACTTCATATAAAAACCGCCATTATCTTTCTCGCGACATCCAATTTCGGTCTCCTCTTCGTTTGTCCACTCCTCGTTCCATCCTTTCCACCATTCGAGCAAGCTCGGCTCTCGTTCTTGAGTCGGATTCAGGTATTCAACAGGATCAGAATTTGAAAATTGACGTGTTTTCATGTCCGGTTTGTTTTGAGCCATTGTTGAGAAAAGGTCCGCCAGGTTTTAACTTGCCAGCTATTTATAGGTCTGGTTTCAAGTGTAGAAGATGCAATAAGTCATATACCAGCAAAAACATCTTTTTAGATCTCACAGTTACTTCTGGAATGAAGGAATATGTAGAAGTCAAACCTGGGGGAACTGAGCTGTTTCGGAGTCCCCTTGTTTCATATCTATACGAAAGAGGATGGCGTCAAAACTTCAACCAAAGTGGTTTCCCAGGCCTTGACGAAGAATTTAAAATGGCCATGGAGTATTTTAAATCTGTTGAAGGTGGTCTTTTAGTGGATGCAAGCTGTGGTAGTGGTTTGTTTTCCAGAAAATTTGCAAAATCTGGGTCCTTCGCAGGTGTAATTGCTCTTGATTTCTCTGAGAATATGCTTCTTCAATGTTATGACTTCATTAAGAAAGATGCTACTCTCTTGAACAGTAATCTTGCTCTTGTGAGGGCAGATATCTCTAGGCTTCCCTTTTCATCAGGATCAGTAGATGGTGTTCATGCTGGAGCAGCGTTGCATTGTTGGCCATCTCCTTCCAATGCTATTGCTGAGATCACTCGTATAATGCGGAGTGGTGGAGTATTTGTGGGAACCACTTTTTTGCGGTACACTTCATCTACTCCCTGGTACCTAAGATTTTTAAGAGAGCAGCGTGGTTTTCAGCCCTATGGCTACCTAACGGAGGAAGAAATAGAGGAACTGTGCAAATCCTGCGGTCTGATTAACTATTCAAGCAAAGTTCAACGATCTTTCATTATGTTCTCTGCCCAGAAGCCTTGA
BLAST of CSPI02G02420.1 vs. Swiss-Prot
Match: Y2104_ARATH (Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=2 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 5.2e-115 Identity = 212/351 (60.40%), Postives = 262/351 (74.64%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. Swiss-Prot
Match: Y1814_ARATH (Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=2 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 8.1e-76 Identity = 147/281 (52.31%), Postives = 189/281 (67.26%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. Swiss-Prot
Match: MENG_STACT (Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus (strain TM300) GN=menG PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.4e-06 Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TrEMBL
Match: A0A0A0LG50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009410 PE=4 SV=1) HSP 1 Score: 682.2 bits (1759), Expect = 3.3e-193 Identity = 337/339 (99.41%), Postives = 337/339 (99.41%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TrEMBL
Match: A0A068UQA4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031249001 PE=4 SV=1) HSP 1 Score: 494.6 bits (1272), Expect = 9.7e-137 Identity = 235/312 (75.32%), Postives = 276/312 (88.46%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TrEMBL
Match: W9RKP5_9ROSA (Putative methyltransferase OS=Morus notabilis GN=L484_009948 PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 3.7e-136 Identity = 242/329 (73.56%), Postives = 283/329 (86.02%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TrEMBL
Match: A0A0D2RS26_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013400 PE=4 SV=1) HSP 1 Score: 483.8 bits (1244), Expect = 1.7e-133 Identity = 238/324 (73.46%), Postives = 273/324 (84.26%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TrEMBL
Match: A0A059CM83_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00449 PE=4 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 5.5e-132 Identity = 230/330 (69.70%), Postives = 272/330 (82.42%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TAIR10
Match: AT2G41040.1 (AT2G41040.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 415.6 bits (1067), Expect = 2.9e-116 Identity = 212/351 (60.40%), Postives = 262/351 (74.64%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. TAIR10
Match: AT1G78140.1 (AT1G78140.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 285.4 bits (729), Expect = 4.5e-77 Identity = 147/281 (52.31%), Postives = 189/281 (67.26%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. NCBI nr
Match: gi|778666340|ref|XP_011648726.1| (PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 682.2 bits (1759), Expect = 4.7e-193 Identity = 337/339 (99.41%), Postives = 337/339 (99.41%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. NCBI nr
Match: gi|449442987|ref|XP_004139262.1| (PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 675.6 bits (1742), Expect = 4.4e-191 Identity = 336/339 (99.12%), Postives = 336/339 (99.12%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. NCBI nr
Match: gi|659070779|ref|XP_008456627.1| (PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 670.6 bits (1729), Expect = 1.4e-189 Identity = 330/339 (97.35%), Postives = 332/339 (97.94%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. NCBI nr
Match: gi|659070781|ref|XP_008456635.1| (PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 664.1 bits (1712), Expect = 1.3e-187 Identity = 329/339 (97.05%), Postives = 331/339 (97.64%), Query Frame = 1
BLAST of CSPI02G02420.1 vs. NCBI nr
Match: gi|661885885|emb|CDP10502.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 494.6 bits (1272), Expect = 1.4e-136 Identity = 235/312 (75.32%), Postives = 276/312 (88.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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