CSPI01G33110.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G33110.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMetalloprotease m41 ftsh, putative
LocationChr1 : 28004505 .. 28004865 (-)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTGAGAAGCAAGATGGAGTAGTTTTGATGGCCACCACTCGGAATTTGAAGCAAATTGATGACGCTTTACAGCGGCCTGGGCGGATGGATCGAGTATTTCATCTTCAAAGTCCAACACAATATGAAAGAGAGAAAATACTACAAATTGCTGCGGAAGAATTCATGGATGAGGAGCTCATTAATTATGTAGATTGGAAAAAGGTAATTTGTATTCACCCTTCTTTCGTTCGTAATATGTCAACGGTAAGTGTTTGCACTGAAGTCTTGTATGGCACTTCACACCAGTAAACTTTAAGGACTTGTTGCAGATAATGAGGGTCATGAAACTGGTTAATTGCTTGCCTATGATATTTGCTTGA

mRNA sequence

ATGGCCACCACTCGGAATTTGAAGCAAATTGATGACGCTTTACAGCGGCCTGGGCGGATGGATCGAGTATTTCATCTTCAAAGTCCAACACAATATGAAAGAGAGAAAATACTACAAATTGCTGCGGAAGAATTCATGGATGAGGAGCTCATTAATTATGTAGATTGGAAAAAGATAATGAGGGTCATGAAACTGGTTAATTGCTTGCCTATGATATTTGCTTGA

Coding sequence (CDS)

ATGGCCACCACTCGGAATTTGAAGCAAATTGATGACGCTTTACAGCGGCCTGGGCGGATGGATCGAGTATTTCATCTTCAAAGTCCAACACAATATGAAAGAGAGAAAATACTACAAATTGCTGCGGAAGAATTCATGGATGAGGAGCTCATTAATTATGTAGATTGGAAAAAGATAATGAGGGTCATGAAACTGGTTAATTGCTTGCCTATGATATTTGCTTGA
Homology
[Close]
BLAST of CSPI01G33110.1 vs. Swiss-Prot
Match: FTSI5_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana GN=FTSHI5 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.6e-19
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRN KQID+AL+RPGRMDRVFHLQSPT+ ERE+IL  AAEE MD EL++ VDW+K+
Sbjct: 927 MATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKV 985

[Close]
BLAST of CSPI01G33110.1 vs. TrEMBL
Match: A0A0A0M0U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673540 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM 60
          MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM
Sbjct: 1  MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM 60

Query: 61 RVMKLVNCLPMIFA 75
          RVMKLVNCLPMIFA
Sbjct: 61 RVMKLVNCLPMIFA 74

[Close]
BLAST of CSPI01G33110.1 vs. TrEMBL
Match: A0A0B0PX39_GOSAR (ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_06977 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-19
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRN+KQID+ALQRPGRMDRVFHLQ PTQ ERE+ILQIAA+E MDEELI+ VDWKK+
Sbjct: 918 MATTRNIKQIDEALQRPGRMDRVFHLQRPTQAERERILQIAAKETMDEELIDMVDWKKV 976

[Close]
BLAST of CSPI01G33110.1 vs. TrEMBL
Match: A0A0D2R067_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G273800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-19
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRN+KQID+ALQRPGRMDRVFHLQ PTQ ERE+ILQIAA+E MDEELI+ VDWKK+
Sbjct: 918 MATTRNIKQIDEALQRPGRMDRVFHLQRPTQAERERILQIAAKETMDEELIDMVDWKKV 976

[Close]
BLAST of CSPI01G33110.1 vs. TrEMBL
Match: A0A151U5C6_CAJCA (Cell division protease ftsH isogeny OS=Cajanus cajan GN=KK1_007179 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-19
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRNLKQID+ALQRPGRMDR+FHLQ PTQ EREKIL +AA+E MD++LI+YVDWKK+
Sbjct: 155 MATTRNLKQIDEALQRPGRMDRIFHLQRPTQVEREKILYLAAKETMDDQLIDYVDWKKV 213

[Close]
BLAST of CSPI01G33110.1 vs. TrEMBL
Match: W9RHH7_9ROSA (ATP-dependent zinc metalloprotease FtsH OS=Morus notabilis GN=L484_024479 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-19
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRNL+Q+D+ALQRPGRMDR+FHLQ PTQ EREKILQIAA+E MD ELI++VDWKK+
Sbjct: 910 MATTRNLQQVDEALQRPGRMDRIFHLQRPTQAEREKILQIAAKETMDNELIDFVDWKKV 968

[Close]
BLAST of CSPI01G33110.1 vs. TAIR10
Match: AT3G04340.1 (AT3G04340.1 FtsH extracellular protease family)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-20
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRN KQID+AL+RPGRMDRVFHLQSPT+ ERE+IL  AAEE MD EL++ VDW+K+
Sbjct: 927 MATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKV 985

[Close]
BLAST of CSPI01G33110.1 vs. NCBI nr
Match: gi|700211651|gb|KGN66747.1| (hypothetical protein Csa_1G673540 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM 60
          MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM
Sbjct: 1  MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM 60

Query: 61 RVMKLVNCLPMIFA 75
          RVMKLVNCLPMIFA
Sbjct: 61 RVMKLVNCLPMIFA 74

[Close]
BLAST of CSPI01G33110.1 vs. NCBI nr
Match: gi|449449669|ref|XP_004142587.1| (PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKK+
Sbjct: 934 MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKV 992

[Close]
BLAST of CSPI01G33110.1 vs. NCBI nr
Match: gi|659086122|ref|XP_008443775.1| (PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRNLK+ID+ALQRPGRMDRVFHLQ PTQ EREKILQIAAE  MDEEL+NYVDWKK+
Sbjct: 929 MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 987

[Close]
BLAST of CSPI01G33110.1 vs. NCBI nr
Match: gi|1012238216|ref|XP_015940181.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic isoform X1 [Arachis duranensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRNLKQID+ALQRPGRMDR+FHLQ PTQ EREKIL +AAEE MD++LI+YVDWKK+
Sbjct: 896 MATTRNLKQIDEALQRPGRMDRIFHLQRPTQTEREKILYLAAEETMDDQLIDYVDWKKV 954

[Close]
BLAST of CSPI01G33110.1 vs. NCBI nr
Match: gi|1012238223|ref|XP_015940182.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic isoform X2 [Arachis duranensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 1   MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKI 60
           MATTRNLKQID+ALQRPGRMDR+FHLQ PTQ EREKIL +AAEE MD++LI+YVDWKK+
Sbjct: 896 MATTRNLKQIDEALQRPGRMDRIFHLQRPTQTEREKILYLAAEETMDDQLIDYVDWKKV 954

The following BLAST results are available for this feature:
BLAST of CSPI01G33110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FTSI5_ARATH7.6e-1974.58Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=A... [more]
BLAST of CSPI01G33110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0U2_CUCSA5.8e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673540 PE=4 SV=1[more]
A0A0B0PX39_GOSAR1.8e-1983.05ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_06977 PE=4... [more]
A0A0D2R067_GOSRA1.8e-1983.05Uncharacterized protein OS=Gossypium raimondii GN=B456_007G273800 PE=4 SV=1[more]
A0A151U5C6_CAJCA2.4e-1979.66Cell division protease ftsH isogeny OS=Cajanus cajan GN=KK1_007179 PE=4 SV=1[more]
W9RHH7_9ROSA3.1e-1979.66ATP-dependent zinc metalloprotease FtsH OS=Morus notabilis GN=L484_024479 PE=4 S... [more]
BLAST of CSPI01G33110.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04340.14.3e-2074.58 FtsH extracellular protease family[more]
BLAST of CSPI01G33110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211651|gb|KGN66747.1|8.4e-34100.00hypothetical protein Csa_1G673540 [Cucumis sativus][more]
gi|449449669|ref|XP_004142587.1|7.1e-2598.31PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus][more]
gi|659086122|ref|XP_008443775.1|1.4e-2086.44PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo][more]
gi|1012238216|ref|XP_015940181.1|1.5e-1981.36PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chlorop... [more]
gi|1012238223|ref|XP_015940182.1|1.5e-1981.36PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chlorop... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0042981 regulation of apoptotic process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009506 plasmodesma
molecular_function GO:0005524 ATP binding
molecular_function GO:0004222 metalloendopeptidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G33110CSPI01G33110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G33110.1CSPI01G33110.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G33110.1.cds2CSPI01G33110.1.cds2CDS
CSPI01G33110.1.cds1CSPI01G33110.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G33110.1.utr5p1CSPI01G33110.1.utr5p1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 1..60
score: 1.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..55
score: 1.1
NoneNo IPR availablePANTHERPTHR23076METALLOPROTEASE M41 FTSHcoord: 1..63
score: 4.9
NoneNo IPR availablePANTHERPTHR23076:SF58FTSH EXTRACELLULAR PROTEASE FAMILY PROTEINcoord: 1..63
score: 4.9