CSPI01G25930.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G25930.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 21294151 .. 21294537 (+)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCACGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

mRNA sequence

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCACGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Coding sequence (CDS)

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCACGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Homology

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BLAST of CSPI01G25930.1 vs. TrEMBL
Match: A0A0A0LYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.6e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

[Close]

BLAST of CSPI01G25930.1 vs. NCBI nr
Match: gi|700210921|gb|KGN66017.1| (hypothetical protein Csa_1G561970 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

The following BLAST results are available for this feature:

BLAST of CSPI01G25930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G25930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYX3_CUCSA	1.6e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561970 PE=4 SV=1	[more]

BLAST of CSPI01G25930.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G25930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210921\|gb\|KGN66017.1\|	2.3e-63	100.00	hypothetical protein Csa_1G561970 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G25930	CSPI01G25930	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G25930.1	CSPI01G25930.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G25930.1.cds1	CSPI01G25930.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 89..125 score: 5.