CSPI01G25760.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G25760.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 21168856 .. 21169188 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCAGGAGTGTTTGGAGGTACCTTTTGGCCACATGGTCAAGCTCTAAAATGTTGAATATGACCATCGTCATCTCATTTAATCTTATACACTCACTTAGTGCCAACAACATGGTGAAAAGAGCGAAAGGGAGCTAAATTTCTTGTACGATTGTAGCAAATTCAACATCTATAACCGACTCCCAAACAAGGAGAGTGTGAACATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGAG

mRNA sequence

ATGTTTCAGGAGTGTTTGGAGTGCCAACAACATGGTGAAAAGAGCGAAAGGGAGCTAAATTTCTTGTACGATTGTAGCAAATTCAACATCTATAACCGACTCCCAAACAAGGAGAGTGTGAACATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGAG

Coding sequence (CDS)

ATGTTTCAGGAGTGTTTGGAGTGCCAACAACATGGTGAAAAGAGCGAAAGGGAGCTAAATTTCTTGTACGATTGTAGCAAATTCAACATCTATAACCGACTCCCAAACAAGGAGAGTGTGAACATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGAG
Homology
[Close]
BLAST of CSPI01G25760.1 vs. TrEMBL
Match: A0A0A0LVW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560820 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKE 85
          MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTK+
Sbjct: 1  MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKD 43

[Close]
BLAST of CSPI01G25760.1 vs. NCBI nr
Match: gi|700210904|gb|KGN66000.1| (hypothetical protein Csa_1G560820 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKE 85
          MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTK+
Sbjct: 1  MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKD 43

The following BLAST results are available for this feature:
BLAST of CSPI01G25760.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G25760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVW4_CUCSA4.7e-1697.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560820 PE=4 SV=1[more]
BLAST of CSPI01G25760.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G25760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210904|gb|KGN66000.1|6.7e-1697.67hypothetical protein Csa_1G560820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G25760CSPI01G25760gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G25760.1CSPI01G25760.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G25760.mrna.cds.1CSPI01G25760.mrna.cds.1CDS
CSPI01G25760.mrna.cds.2CSPI01G25760.mrna.cds.2CDS