CSPI01G25400.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G25400.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 20886923 .. 20887618 (+)
Sequence length495
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAATCAATCGATCCTCCACCTCCTTAACATAACCGTCAAATTACAGTTGGAATTTCAAACCTTAATTTACCCAAAACCTCTCATCTCCTATCAGAATTTCAACTTTTGATGAAGCATTTCCCTCTAGTCTCATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAACCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGAATGATCGGCTCTACATGGTTAAAGAAAGAAAAGAACTAAAAGAAGTGGGCTGGTAGAGACTGATCGAC

mRNA sequence

ATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAACCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Coding sequence (CDS)

ATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAACCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA
Homology
[Close]
BLAST of CSPI01G25400.1 vs. TrEMBL
Match: A0A0A0LW23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.6e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 5   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 64
           MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 124
           CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 165
           AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

[Close]
BLAST of CSPI01G25400.1 vs. NCBI nr
Match: gi|700210872|gb|KGN65968.1| (hypothetical protein Csa_1G554550 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 3.8e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 5   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 64
           MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 124
           CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 165
           AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

The following BLAST results are available for this feature:
BLAST of CSPI01G25400.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G25400.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW23_CUCSA2.6e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1[more]
BLAST of CSPI01G25400.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G25400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210872|gb|KGN65968.1|3.8e-87100.00hypothetical protein Csa_1G554550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G25400CSPI01G25400gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G25400.1CSPI01G25400.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G25400.1.utr5p1CSPI01G25400.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G25400.1.cds1CSPI01G25400.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G25400.1.utr3p1CSPI01G25400.1.utr3p1three_prime_UTR