CSPI01G22560.1 (mRNA) Wild cucumber (PI 183967)

NameCSPI01G22560.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransmembrane protein, putative
LocationChr1 : 18143976 .. 18144811 (+)
Sequence length414
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTTTCCTCTCCTGCTTCTGCTTCTATTTCAAGGCTCTTGGTTGAGGCAAATCGACAAACATGACTCGAATGCTTACTTTCCTGTTCTGTCTCGCTTCCTTCACATTTCTTTCCATTGCCCGAGCTGACGGCAGAGCTCCTCATGGCTTGGTATATGAGAGCCCGGTGGCCTTTTCTCCAATGGCATATGATTTCTTCCATCCAAGCACTCAGAATCCCAGTGGGAAAGACCCATGTGGTGATTCCAAATGTTCCCCCCTTCCCCTTGCGGCACAAGTGCAATCCACCCCTGCAAAAGAAAGCAAATACTCCACAACGATCCAGAGCAGTAACCACCGCGTGGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGACAATGGGAGTGTACTATGTTCTACGTACACGCCAAGCCAATGCAAACCGAGCTATTGCTGCACAACCTAGCGCTTGACATGGGCAAAGCCAACATGTTTATCAGATTAGACAAACACTTCGGCACTTCACTTCTCTTCCTTTGTGTAATTCTTCACTCTTTCTTGCCATGGCTTTACATATTTATTGTTCTGTTATAGAAGTAGGAGGCTAATCTAAAGCTATCATCAAAATTTCCCTAAACTTTTCATCTTCATCCCTCCTCTCCCTCAGTGTGTAAAATCAAGTTTGTAAAATTTTTGCCCCCTTGGAGTTTCTAGATTTGCTCCTACTAATATAGCATGCAACAAATGTCAAAGAAAATCCACAATTTTGCATTGAGAGCTTTGAGAAATTAAAGCACATTCAATCAACACTGCCAAAGAATAATCAAATGAAG

mRNA sequence

ATGACTCGAATGCTTACTTTCCTGTTCTGTCTCGCTTCCTTCACATTTCTTTCCATTGCCCGAGCTGACGGCAGAGCTCCTCATGGCTTGGTATATGAGAGCCCGGTGGCCTTTTCTCCAATGGCATATGATTTCTTCCATCCAAGCACTCAGAATCCCAGTGGGAAAGACCCATGTGGTGATTCCAAATGTTCCCCCCTTCCCCTTGCGGCACAAGTGCAATCCACCCCTGCAAAAGAAAGCAAATACTCCACAACGATCCAGAGCAGTAACCACCGCGTGGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGACAATGGGAGTGTACTATGTTCTACGTACACGCCAAGCCAATGCAAACCGAGCTATTGCTGCACAACCTAGCGCTTGA

Coding sequence (CDS)

ATGACTCGAATGCTTACTTTCCTGTTCTGTCTCGCTTCCTTCACATTTCTTTCCATTGCCCGAGCTGACGGCAGAGCTCCTCATGGCTTGGTATATGAGAGCCCGGTGGCCTTTTCTCCAATGGCATATGATTTCTTCCATCCAAGCACTCAGAATCCCAGTGGGAAAGACCCATGTGGTGATTCCAAATGTTCCCCCCTTCCCCTTGCGGCACAAGTGCAATCCACCCCTGCAAAAGAAAGCAAATACTCCACAACGATCCAGAGCAGTAACCACCGCGTGGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGACAATGGGAGTGTACTATGTTCTACGTACACGCCAAGCCAATGCAAACCGAGCTATTGCTGCACAACCTAGCGCTTGA
BLAST of CSPI01G22560.1 vs. TrEMBL
Match: A0A0A0LV85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.8e-68
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 1

Query: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAI-AAQPSA 138
           RTRQANANRA+ AAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of CSPI01G22560.1 vs. TrEMBL
Match: A0A061GY53_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042052 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-35
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 1

Query: 8   LFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCGDSKCSPL 67
           L  L+S   +S+ARA  RAPHG+ YE+P+AFSP AY+FFHP T+ P  ++PC  S CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVLRTRQANA 127
           P+AAQV +  A E    +T Q S HR+GAGGI G+VFG+ FAV L MG YYVL TR+ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAIAAQPSA 138
           NRA + QP A
Sbjct: 166 NRANSVQPDA 175

BLAST of CSPI01G22560.1 vs. TrEMBL
Match: U5GGS3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.7e-35
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1

Query: 7   FLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPC-GDSKCS 66
           FLFCL+S T L IARA  RAPHGLVYE PVAFSP A +FFHP TQ P+ ++PC   S CS
Sbjct: 31  FLFCLSSLTILFIARAQDRAPHGLVYEKPVAFSPSAVEFFHPKTQEPNTENPCAASSSCS 90

Query: 67  PLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVLRTRQA 126
           P PLAAQ++ T   + K ST+ Q   +++GAGGI G++ G+ FAV LTMGVYYV  TR+A
Sbjct: 91  PFPLAAQLEDTDQTQGKISTS-QRGGNQLGAGGIAGVILGLAFAVLLTMGVYYVTITRKA 150

Query: 127 NANRAIAAQPSA 138
           N NRA + QP+A
Sbjct: 151 NINRANSDQPNA 161

BLAST of CSPI01G22560.1 vs. TrEMBL
Match: A0A0D2QDG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G107100 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.2e-34
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 1

Query: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           M+ +L+FL  ++    LSIA  +GRAPHG+ YE+PVAFSP AY+FFHP  Q P  K+PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIANGEGRAPHGIAYENPVAFSPSAYEFFHPKAQVPDTKNPCA 60

Query: 61  DSKCSPLPLAAQV-QSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYV 120
            S CSPLP+AAQ+   T A ESK ST  + S H++GAGGI+G+VFG+ FAV L MGVYYV
Sbjct: 61  ASSCSPLPIAAQMGDGTTALESKVSTQ-KESGHQLGAGGIVGLVFGLAFAVLLAMGVYYV 120

Query: 121 LRTRQANANRAIAAQPSA 138
           L  R++NAN+A   Q +A
Sbjct: 121 LNIRRSNANKANYVQSNA 137

BLAST of CSPI01G22560.1 vs. TrEMBL
Match: K7LTE2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G067500 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 79/126 (62.70%), Postives = 90/126 (71.43%), Query Frame = 1

Query: 5   LTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCGDSKC 64
           L+FLF L S   LSIAR   RAPHGLVYESPVAF P AYDFFHP+ Q P  KDPC  SKC
Sbjct: 6   LSFLF-LISLALLSIARGQERAPHGLVYESPVAFPPAAYDFFHPNAQKPENKDPCVASKC 65

Query: 65  SPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVLRTRQ 124
           SPLPLAAQV +T   E+K STT Q    ++G GG+ GI+  + FAV L MG+YYV  TRQ
Sbjct: 66  SPLPLAAQVDATQIYENKASTT-QKGGKQIGGGGVAGIITAVAFAVLLAMGIYYVKVTRQ 125

Query: 125 ANANRA 131
           AN +RA
Sbjct: 126 ANMSRA 129

BLAST of CSPI01G22560.1 vs. TAIR10
Match: AT2G28410.1 (AT2G28410.1 unknown protein)

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-20
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1

Query: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGK-DPC 60
           MT     +F  +S    + A A  RAPHGL YE+PVAFSP A+DFFH   +NP    +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GDSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVG--AGGILGIVFGITFAVFL 113
            +S CSPLP+AA+VQ   AK  +      S+  R G    G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

BLAST of CSPI01G22560.1 vs. TAIR10
Match: AT5G60650.1 (AT5G60650.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-15
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 1

Query: 1   MTRMLTFLF-CLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPC 60
           +T  L F F CL+    +SIA +  R  HG  Y +P AFSP AYDFFHP +      +P 
Sbjct: 4   LTHSLLFFFSCLSMLLCVSIAGS--RPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63

Query: 61  GDS----KCSPLPLAAQVQSTPAKESKYS----TTIQSSNHRVGAGGILGIVFGITFAVF 120
             S      SP P    +    ++ SK S    TT +S     G G  +G+V G++F  F
Sbjct: 64  KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123

Query: 121 LTMGVYYVLRTRQANANRAIAAQPSA 138
           L++G+Y+V++ ++AN  R I     A
Sbjct: 124 LSLGIYFVIKKQRANIIRTIVTHSDA 147

BLAST of CSPI01G22560.1 vs. NCBI nr
Match: gi|778661360|ref|XP_011657962.1| (PREDICTED: uncharacterized protein LOC105435923 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.5e-68
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 1

Query: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAI-AAQPSA 138
           RTRQANANRA+ AAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of CSPI01G22560.1 vs. NCBI nr
Match: gi|659115379|ref|XP_008457527.1| (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-65
Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 1

Query: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
           MTRMLTFLFCL+SFTFLS+ARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
           DSKCSPLPLAAQVQSTPA+ESKYSTTIQ+S HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAI-AAQPSA 138
           RTRQANANRA+ AAQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of CSPI01G22560.1 vs. NCBI nr
Match: gi|657952768|ref|XP_008359212.1| (PREDICTED: uncharacterized protein LOC103422926 [Malus domestica])

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-36
Identity = 81/133 (60.90%), Postives = 103/133 (77.44%), Query Frame = 1

Query: 3   RMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCGDS 62
           R+  FLF  AS TFLS+A A+ RAPHGL  E+P AFSP AY+FFHP++QNP+ KDPC +S
Sbjct: 4   RVSIFLF-FASLTFLSVAFAEERAPHGLAKENPTAFSPSAYNFFHPTSQNPNAKDPCVES 63

Query: 63  KCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVLRT 122
            CSPLP+AAQV+ST A ES++ST+ Q+   R GAGG+ GI+FG+ FAVF+ MGVYYVL T
Sbjct: 64  NCSPLPVAAQVRSTEAHESRFSTS-QNGRARFGAGGVAGIMFGLAFAVFMAMGVYYVLVT 123

Query: 123 RQANANRAIAAQP 136
           R+AN +R    +P
Sbjct: 124 RRANMSRTNTVKP 134

BLAST of CSPI01G22560.1 vs. NCBI nr
Match: gi|590590455|ref|XP_007016739.1| (Uncharacterized protein TCM_042052 [Theobroma cacao])

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-35
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 1

Query: 8   LFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCGDSKCSPL 67
           L  L+S   +S+ARA  RAPHG+ YE+P+AFSP AY+FFHP T+ P  ++PC  S CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVLRTRQANA 127
           P+AAQV +  A E    +T Q S HR+GAGGI G+VFG+ FAV L MG YYVL TR+ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAIAAQPSA 138
           NRA + QP A
Sbjct: 166 NRANSVQPDA 175

BLAST of CSPI01G22560.1 vs. NCBI nr
Match: gi|694382081|ref|XP_009367075.1| (PREDICTED: uncharacterized protein LOC103956771 [Pyrus x bretschneideri])

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-35
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 1

Query: 2   TRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCGD 61
           +R+  FLF  AS TFLS+A A+ RAPHGL  E+P+AFSP AY+FFHP++QNP+ KDPC +
Sbjct: 3   SRVSIFLF-FASLTFLSVAFAEERAPHGLAKENPMAFSPSAYNFFHPTSQNPNAKDPCVE 62

Query: 62  SKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVLR 121
           S CSPLPLAAQV+ST A ES++ST+ Q+   R GA G+ GIVFG+ FAVF+ MGVYYVL 
Sbjct: 63  SNCSPLPLAAQVRSTEAHESRFSTS-QNRRARFGAAGVAGIVFGLAFAVFMAMGVYYVLV 122

Query: 122 TRQANANRAIAAQP 136
           TR AN +     +P
Sbjct: 123 TRSANMSLTNTVKP 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LV85_CUCSA1.8e-6898.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495260 PE=4 SV=1[more]
A0A061GY53_THECC1.5e-3558.46Uncharacterized protein OS=Theobroma cacao GN=TCM_042052 PE=4 SV=1[more]
U5GGS3_POPTR9.7e-3559.85Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1[more]
A0A0D2QDG4_GOSRA8.2e-3456.52Uncharacterized protein OS=Gossypium raimondii GN=B456_009G107100 PE=4 SV=1[more]
K7LTE2_SOYBN2.4e-3362.70Uncharacterized protein OS=Glycine max GN=GLYMA_12G067500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G28410.12.7e-2045.22 unknown protein[more]
AT5G60650.12.0e-1535.62 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778661360|ref|XP_011657962.1|2.5e-6898.55PREDICTED: uncharacterized protein LOC105435923 [Cucumis sativus][more]
gi|659115379|ref|XP_008457527.1|1.5e-6593.48PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo][more]
gi|657952768|ref|XP_008359212.1|5.7e-3660.90PREDICTED: uncharacterized protein LOC103422926 [Malus domestica][more]
gi|590590455|ref|XP_007016739.1|2.1e-3558.46Uncharacterized protein TCM_042052 [Theobroma cacao][more]
gi|694382081|ref|XP_009367075.1|3.7e-3560.45PREDICTED: uncharacterized protein LOC103956771 [Pyrus x bretschneideri][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G22560CSPI01G22560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G22560.1CSPI01G22560.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G22560.1.utr5p1CSPI01G22560.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G22560.1.cds1CSPI01G22560.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G22560.1.utr3p1CSPI01G22560.1.utr3p1three_prime_UTR


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35718FAMILY NOT NAMEDcoord: 1..137
score: 2.3
NoneNo IPR availablePANTHERPTHR35718:SF1EXPRESSED PROTEINcoord: 1..137
score: 2.3