CSPI01G19040.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G19040.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr1 : 14446725 .. 14450609 (+)
Sequence length	2208

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTGGCAAGAGTGGAAATCGAGAAGTTCGATGGAAAGAGAGACTTTGCCTTATGGAAGGCAAAGATTAAGGCCTTGTTAGGACAACAAAAAGCTCACAAAGCCCTTCTAGATTCTTCAGAACTTCCAACAACCCTCACAGCAGTACAAAATGAAGAAATGAAATTAAATGCCTATGGAACACTAATACTAAACCTTAGTGACAATGTTATAAGGCAAGTACTAGAAGAAGAGACAACACACAAAATTTGGAAGAAATTAGAAAGTCTATATGCCACTAAAGATCTCTCAAACAAGATGTATCTAAGGGAAAAATTCTTTACATATAAAATGGATCCTTCCAAAAGTTTAACAGACAACTTAGATAAGTTCAAGAAAATAGTTTCAGACTTTAAAAGTCTTGAAGACAAACTCAGTGATGATAATGAGGCATTCGTTCTCCAAAATTCTCTACCCGAGGCATACAAAGAAGTGAAAAATTCACTAAAGTATGGTAAAGACTCAGCCAAAACAGATGTCATAATATCAACCCTAAGAACCAGAGAATTGAAAATACAGTTATCTCATAAGGAACATCAAAGTGGAAATGGTTTGTTTGTCAAAGGTAAATCCCAAAACAATCAGGGTAAAAATAGTAGCAAATCCTCCTCTTATGAAGATAAGAAAGTTAAACAAAAAGAGAAGTGTAAATAGAGTAAAAAGAAGGGACACCTTCAAGAGTGTTTTTTCCTTAAAAGAAATATCAAGAAAAAGAAAAAGACTTAAAAGGAAAACAACCAGAAGCCTTCATAGTAGAAATATCATTTACCTACACGGATGCCCTGACATCAACCTTAGACCAAGCCAATTATGTTAACCCCTTCCGAAAACGTGATTGGGTCCTAGACTCAGGATGCACCTACCATATGACACTTTTTAGAGCATGGTTCAATACCTATAAAGAAATCAGTAGAGAGTCTGTGTTTATGGGGAATAATAATGCTTGTAACATTGCTGGAATTGGATCGGTCACCATGAAACTAAAGGATGAGACTGTAAATCTCCTTAGAAATGTAAGACATGTTCCTCACCTTAAAAGAAACTTAATCTCCTTGGGAATGCTAGACTCTCTAGGATGCGAATACAAAGGAAAATGTGGAGTCTTCCAAGTTTTCATGGACTCTAAAGAAGTATTGGTTGGGGGAAAAGGTAAATGACCTGTTTATAATAAAAGGGGTTGAAATGATAGATGAAGCAAATATTGTATTAGCTCTAAACTTAACAGAGGATGACCTTTGGCACAAAAGACTGTCTCATATAAGTCAGAAGGGACTTGAGGCTTTATCTAAACAAGACATTCTACCTTTAGACATATGCAGTAAACTGTCTTTCTGTGAACACTGTGTGCTAGGCAAAGCAAGGAAACAAAGTTTCACCAAAGCACAACACACAACTAAAGGAATTCTAGACTATATCTATCCAGATTTATGGGGTCCAACCCCAACTCCAAGCCTAAGAGCTCAAGGTATTTCTTATCATTTACTGATGATTTTTCAAGAAAAAATTGGATTTATTTAAAAACAAAAGATCAAGTTTTTGAAAAATTTTAAAAATGAAAACTAATGATAGAAAAACAAACTGATAAAGAGATTAAATACCTTAGAGCTGACAATGGTTCGGAGTTTTGTGGAGAGGTGTTCAATCATTTTTGCAAGGAAAGTGGAATCACAAGACACAAAAATGTGAGATACACACCTCAACAAAATATGGTGGCAGAAAGACTTAACAGAACTATAATGGAAAAGGTAAGATGCCAACTATCAGATGTCATTCTGGAAGAAAAGTTTTGGGTTGAAGTTGCTGCCTATGCGGTGTACACATTGAATAGAAGCCCCCATACCTCCTTAGGACTCTTAACACCTGAGGAGAAATGGTCCATCTAAATGATCTTTAGGTGTTTGGATGTGTAGGGTATGTCCATCAAAACTAAGGGAAACTAAAGGCTAGAGATGTTAAGTGTATGTTTGTTGGCTTCACAGAAGGGGTAAAGGGTTTCAAGTTGTGGCACCACTAACAAGAAGTTCATAATTAGTAGGGATGTTCATTTCAGAGAAACTGAGATGTTTATGCAAGGGAAAGGTAATACTAAAAGGAGCACTGAAGCCACAAAAACCTATACTCAGATTGAACTGGAGAATGCTAGAAACGGTGCTCAATTTACTAAGAAAACTAAAGTTATTGATCAAGAAATCGATGGAGAACAAACTAAAATAGTTAAAGAACAATCTAACTTGAGCCAATATTCCCTAGCAAGAGACAGACAAAGAACGGTAATTATTCCTCCAATCGGTATGCTGAAACTAACTATATAAGTTTTTTTCTAAACGTTACTATAGCTCCCAGTGATAATGAACCTAGTTCTTTTGAGGAAGTTAAGCTGTAATGATGCTAGACGGTGGATTGAAGCCATGAATGAAGAAATAAATTCTCTAAAGGTAAATGACACATGGACCCTTATCCCTTTACCTAAGGAATGCAAACCAATAGCATCTAAGTGGATCTATAAACTCAAGGAAGGAGTCACTGAACTCACTACCAAGGTACAAGGCAAAGTTGGTAGCTAAGGACTTTACTCAAAGAGAAGGTATAGACTATTCTGAAATTTTCTCACCAGTTGTTAAACAAACCTCTATTAGACCTCTCTTATCCCTAGTTACTTAATATAATCTAGAGTTGGACCAACTTGATGTAAAGGCAGCCTTCCTTCATGGCTATCTAGATGAAACAATTTACATGGTTCAACCTAAAGGTTTTGAAGTTCAAGGTAAGGAAGACCTCTACTGCTTACTAAAGAAGTCAATATATGGACTGGAGCAATCACCTAGGTGCTGGATCTTATGGTTTTATATCCAGACTGAGTTTTAATAGAAGCTCATACAATATGTGTGTCTACATAAACTCAACAACCTATAAGGAGATGGTTTTCTTTCTACTCTATGTCGATGATATGCTCCTTGCCAGAAGCTCTAAGGAAGATTTAACTCATGTCAAAACTCTTTTAAGTAAAGAATTTTACATGAAGGATTTAGGTGAATCAAGAAAGATCCTAGGAATTGACATCACAAGAGACAAAAACCAATCCATACGAAGCATAAGTCAATCAACCTACTATGAGAAGGTGATCAGAAGATTCAACCTCACCACTGCTAGACCAATCACACTCCCTATTGCACAATATTTTAAACTATCAGCCGCTAATTTTCCTAGTGAGACAGACATAGAGCACATGAATATATGTTAGAAATTAATAAGCTAGATACATTATGGATAACACATTAATAGATACATTTCTAGTTTCAAGATACATATGCATTTCTAGATACATGTAATTATTCAAGTACATGAATGGTATGTATTCATGTACTTCATTTATTTTGTGTCTTTTAGGAAGTGTCTCTTGAATACTATATATAGAGATCATTTCCTTCATTTGTACACAAAGATAAAAGAATAAAATCAGTAGAAGCAAATTGAGTTTTAGAAAGTAAGTGAGTTTCAAGAGAACAACATTCTTCTCTTGTGTGTTATTGAGTTTTCTAAGAGAACAAATTTCTTCTCTTAAAAGTTTGTGAGATTTAGAGTAAATTTAGAGTGGGCTCGTCAACGCCTCCAACAAAGTGGTATCAGAGCAAGGATTGAAAGATGTCATCTAACATGTTGCAGCCTCAACTTCCTCGTTTTGAGGGAAAAACTTATAGGCGGTGGAGCCAGCAAATGAAGGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACATCGGATATTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTGAAAGATGCTAGAAAAAAAGGATAA

mRNA sequence

ATGGTAGTGGCAAGAGTGGAAATCGAGAAGTTCGATGGAAAGAGAGACTTTGCCTTATGGAAGGCAAAGATTAAGGCCTTGTTAGGACAACAAAAAGCTCACAAAGCCCTTCTAGATTCTTCAGAACTTCCAACAACCCTCACAGCAGTACAAAATGAAGAAATGAAATTAAATGCCTATGGAACACTAATACTAAACCTTAGTGACAATGTTATAAGGCAAGTACTAGAAGAAGAGACAACACACAAAATTTGGAAGAAATTAGAAAGTCTATATGCCACTAAAGATCTCTCAAACAAGATGTATCTAAGGGAAAAATTCTTTACATATAAAATGGATCCTTCCAAAAGTTTAACAGACAACTTAGATAAGTTCAAGAAAATAGTTTCAGACTTTAAAAGTCTTGAAGACAAACTCAGTGATGATAATGAGGCATTCGTTCTCCAAAATTCTCTACCCGAGGCATACAAAGAAGTGAAAAATTCACTAAAGTATGGTAAAGACTCAGCCAAAACAGATGTCATAATATCAACCCTAAGAACCAGAGAATTGAAAATACAGTTATCTCATAAGGAACATCAAAGTGGAAATGGTTTGTTTGTCAAAGCCAATTATGTTAACCCCTTCCGAAAACGTGATTGGGTCCTAGACTCAGGATGCACCTACCATATGACACTTTTTAGAGCATGGTTCAATACCTATAAAGAAATCAGTAGAGAGTCTGTGTTTATGGGGAATAATAATGCTTGTAACATTGCTGGAATTGGATCGGTCACCATGAAACTAAAGGATGAGACTGTAAATCTCCTTAGAAATGTAAGACATGTTCCTCACCTTAAAAGAAACTTAATCTCCTTGGGAATGCTAGACTCTCTAGGATGCGAATACAAAGGAAAATGTGGAGTCTTCCAAGTTTTCATGGACTCTAAAGAAGTATTGGTTGGGGGAAAAGAAAAACAAACTGATAAAGAGATTAAATACCTTAGAGCTGACAATGGTTCGGAGTTTTGTGGAGAGGTGTTCAATCATTTTTGCAAGGAAAGTGGAATCACAAGACACAAAAATGTGAGATACACACCTCAACAAAATATGGTGGCAGAAAGACTTAACAGAACTATAATGGAAAAGGTAAGATGCCAACTATCAGATGTCATTCTGGAAGAAAAGTTTTGGGTTGAAGTTGCTGCCTATGCGGTGTACACATTGAATAGAAGCCCCCATACCTCCTTAGGACTCTTAACACCTGAGGAGAAATGGGTTTCAAGTTGTGGCACCACTAACAAGAAGTTCATAATTAGTAGGGATGTTCATTTCAGAGAAACTGAGATGTTTATGCAAGGGAAAGGTAATACTAAAAGGAGCACTGAAGCCACAAAAACCTATACTCAGATTGAACTGGAGAATGCTAGAAACGGTGCTCAATTTACTAAGAAAACTAAAGTTATTGATCAAGAAATCGATGGAGAACAAACTAAAATAGTTAAAGAACAATCTAACTTGAGCCAATATTCCCTAGCAAGAGACAGACAAAGAACGCTCCCAGTGATAATGAACCTAGTTCTTTTGAGGAAGTTAAGCTGTAATGATGCTAGACGGTGGATTGAAGCCATGAATGAAGAAATAAATTCTCTAAAGGTAAATGACACATGGACCCTTATCCCTTTACCTAAGGAATGCAAACCAATAGCATCTAAGTGGATCTATAAACTCAAGGAAGGAGTCACTGAACTCACTACCAAGGCAGCCTTCCTTCATGGCTATCTAGATGAAACAATTTACATGGTTCAACCTAAAGGTTTTGAAGTTCAAGGTAAGGAAGACCTCTACTGCTTACTAAAGAAGTCAATATATGGACTGGAGCAATCACCTAGAAGCTCTAAGGAAGATTTAACTCATGTCAAAACTCTTTTAAGTAAAGAATTTTACATGAAGGATTTAGGTGAATCAAGAAAGATCCTAGGAATTGACATCACAAGAGACAAAAACCAATCCATACGAAGCATAAGTCAATCAACCTACTATGAGAAGCCTCAACTTCCTCGTTTTGAGGGAAAAACTTATAGGCGGTGGAGCCAGCAAATGAAGGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACATCGGATATTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTGAAAGATGCTAGAAAAAAAGGATAA

Coding sequence (CDS)

ATGGTAGTGGCAAGAGTGGAAATCGAGAAGTTCGATGGAAAGAGAGACTTTGCCTTATGGAAGGCAAAGATTAAGGCCTTGTTAGGACAACAAAAAGCTCACAAAGCCCTTCTAGATTCTTCAGAACTTCCAACAACCCTCACAGCAGTACAAAATGAAGAAATGAAATTAAATGCCTATGGAACACTAATACTAAACCTTAGTGACAATGTTATAAGGCAAGTACTAGAAGAAGAGACAACACACAAAATTTGGAAGAAATTAGAAAGTCTATATGCCACTAAAGATCTCTCAAACAAGATGTATCTAAGGGAAAAATTCTTTACATATAAAATGGATCCTTCCAAAAGTTTAACAGACAACTTAGATAAGTTCAAGAAAATAGTTTCAGACTTTAAAAGTCTTGAAGACAAACTCAGTGATGATAATGAGGCATTCGTTCTCCAAAATTCTCTACCCGAGGCATACAAAGAAGTGAAAAATTCACTAAAGTATGGTAAAGACTCAGCCAAAACAGATGTCATAATATCAACCCTAAGAACCAGAGAATTGAAAATACAGTTATCTCATAAGGAACATCAAAGTGGAAATGGTTTGTTTGTCAAAGCCAATTATGTTAACCCCTTCCGAAAACGTGATTGGGTCCTAGACTCAGGATGCACCTACCATATGACACTTTTTAGAGCATGGTTCAATACCTATAAAGAAATCAGTAGAGAGTCTGTGTTTATGGGGAATAATAATGCTTGTAACATTGCTGGAATTGGATCGGTCACCATGAAACTAAAGGATGAGACTGTAAATCTCCTTAGAAATGTAAGACATGTTCCTCACCTTAAAAGAAACTTAATCTCCTTGGGAATGCTAGACTCTCTAGGATGCGAATACAAAGGAAAATGTGGAGTCTTCCAAGTTTTCATGGACTCTAAAGAAGTATTGGTTGGGGGAAAAGAAAAACAAACTGATAAAGAGATTAAATACCTTAGAGCTGACAATGGTTCGGAGTTTTGTGGAGAGGTGTTCAATCATTTTTGCAAGGAAAGTGGAATCACAAGACACAAAAATGTGAGATACACACCTCAACAAAATATGGTGGCAGAAAGACTTAACAGAACTATAATGGAAAAGGTAAGATGCCAACTATCAGATGTCATTCTGGAAGAAAAGTTTTGGGTTGAAGTTGCTGCCTATGCGGTGTACACATTGAATAGAAGCCCCCATACCTCCTTAGGACTCTTAACACCTGAGGAGAAATGGGTTTCAAGTTGTGGCACCACTAACAAGAAGTTCATAATTAGTAGGGATGTTCATTTCAGAGAAACTGAGATGTTTATGCAAGGGAAAGGTAATACTAAAAGGAGCACTGAAGCCACAAAAACCTATACTCAGATTGAACTGGAGAATGCTAGAAACGGTGCTCAATTTACTAAGAAAACTAAAGTTATTGATCAAGAAATCGATGGAGAACAAACTAAAATAGTTAAAGAACAATCTAACTTGAGCCAATATTCCCTAGCAAGAGACAGACAAAGAACGCTCCCAGTGATAATGAACCTAGTTCTTTTGAGGAAGTTAAGCTGTAATGATGCTAGACGGTGGATTGAAGCCATGAATGAAGAAATAAATTCTCTAAAGGTAAATGACACATGGACCCTTATCCCTTTACCTAAGGAATGCAAACCAATAGCATCTAAGTGGATCTATAAACTCAAGGAAGGAGTCACTGAACTCACTACCAAGGCAGCCTTCCTTCATGGCTATCTAGATGAAACAATTTACATGGTTCAACCTAAAGGTTTTGAAGTTCAAGGTAAGGAAGACCTCTACTGCTTACTAAAGAAGTCAATATATGGACTGGAGCAATCACCTAGAAGCTCTAAGGAAGATTTAACTCATGTCAAAACTCTTTTAAGTAAAGAATTTTACATGAAGGATTTAGGTGAATCAAGAAAGATCCTAGGAATTGACATCACAAGAGACAAAAACCAATCCATACGAAGCATAAGTCAATCAACCTACTATGAGAAGCCTCAACTTCCTCGTTTTGAGGGAAAAACTTATAGGCGGTGGAGCCAGCAAATGAAGGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACATCGGATATTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTGAAAGATGCTAGAAAAAAAGGATAA

Homology

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BLAST of CSPI01G19040.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-22
Identity = 58/198 (29.29%), Postives = 110/198 (55.56%), Query Frame = 1


Query: 5   RVEIEKFDGKRDFALWKAKIKALLGQQKAHKALLDSSELPTTLTAVQNEEMKLNAYGTLI 64
           + E+ KF+G   F+ W+ +++ LL QQ  HK L   S+ P T+ A    ++   A   + 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 65  LNLSDNVIRQVLEEETTHKIWKKLESLYATKDLSNKMYLREKFFTYKMDPSKSLTDNLDK 124
           L+LSD+V+  +++E+T   IW +LESLY +K L+NK+YL+++ +   M    +   +L+ 
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124

Query: 125 FKKIVSDFKSLEDKLSDDNEAFVLQNSLPEAYKEVKNSLKYGKDSAKTDVIISTLRTREL 184
           F  +++   +L  K+ ++++A +L NSLP +Y  +  ++ +GK + +   + S L   E 
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNE- 184

Query: 185 KIQLSHKEHQSGNGLFVK 203
             ++  K    G  L  +
Sbjct: 185 --KMRKKPENQGQALITE 199

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BLAST of CSPI01G19040.1 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-14
Identity = 48/125 (38.40%), Postives = 63/125 (50.40%), Query Frame = 1


Query: 297 KGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSEFCGEVFNHFCKESGITRHKNV 356
           K K  VF +F D     V   E   + ++ YL  DNG E+       FC + GI+ H  V
Sbjct: 520 KYKSDVFSMFQD----FVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTV 579

Query: 357 RYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWVEVAAYAVYTLNRSPHTSL--GLLT 416
            +TPQ N V+ER+ RTI EK R  +S   L++ FW E    A Y +NR P  +L     T
Sbjct: 580 PHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKT 639

Query: 417 PEEKW 420
           P E W
Sbjct: 640 PYEMW 640

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BLAST of CSPI01G19040.1 vs. TrEMBL
Match: A5AJF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025437 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 8.2e-72
Identity = 183/578 (31.66%), Postives = 298/578 (51.56%), Query Frame = 1


Query: 36  ALLDSSELPTTLTAVQNEEMKLNAYGTLILNLSDNVIRQVLEEETTHKIWKKLESLYATK 95
           ALL    LP+T+   Q  E+   A+  +IL+LSD V+R+V + ++  K+W KLESLY TK
Sbjct: 423 ALLGEKNLPSTMQEKQKIELLEEAHSAIILSLSDTVLREVAKAKSATKLWLKLESLYMTK 482

Query: 96  DLSNKMYLREKFFTYKMDPSKSLTDNLDKFKKIVSDFKSLEDKLSDDNEAFVLQNSLPEA 155
            L+N+++ + K +T+KM    S+ ++LD F KI+ D ++++  + D+++A +L  SL  +
Sbjct: 483 SLANRLHKKIKLYTFKMTTGMSIEEHLDHFNKIILDLENIDITILDEDKAILLLTSLDAS 542

Query: 156 YKEVKNSLKYGKDSAKTDVIISTLRTRELKIQLSHKEHQSGNGLFVKANYVNPFRKRDWV 215
           Y  +K ++ YG+DS   D    T  ++E +          G       N       ++W+
Sbjct: 543 YTNMKEAIMYGRDSLTFDE--ETKHSQENREWGDAAVILDGYDSAEMLNVAEMDSSKEWI 602

Query: 216 LDSGCTYHMTLFRAWFNTYKEISRESVFMGNNNACNIAGIGSVTMKLKDETVNLLRNVRH 275
           LDSGC++HM   +AWF  +KE     V  G+N    I G  +V +K  D    +L++V++
Sbjct: 603 LDSGCSFHMCPIKAWFKDFKEADGGYVIQGSNEHYKILGTDTVRIKHYDGIERVLKDVKY 662

Query: 276 VPHLKRNLISLGMLDSLGCEYKGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSE 335
           +P LKRNLISLGMLD+ G  ++ +    +V   S  ++ G  +      I  +     S 
Sbjct: 663 IPELKRNLISLGMLDNSGYTFESEPNSLRVARGSLTIMKGTIKNGLYTFIGQIVTGKVST 722

Query: 336 FCGE---VFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWV 395
              E     N + +  GI  H+ VRYTPQQN +AER+NRTI+E+VRC LS   L + FW 
Sbjct: 723 VPKEDVGTTNLWHQRLGIATHRTVRYTPQQNALAERMNRTILERVRCMLSSSGLSKVFWA 782

Query: 396 EVAAYAVYTLNRSPHTSLGLLTPEEKWVSSCGTTN--KKFIISRDVHFRETEMFMQ---- 455
           E     V+ +N+S  ++L L TP+EKW          K F  +  VH +  ++  +    
Sbjct: 783 ETVETTVHLINKSLSSALQLKTPQEKWTGKYADYQYLKVFGCTAYVHTKTNKLESRVVKC 842

Query: 456 -----GKGNTKRSTEATKTYTQIELENARNGAQFTKKTKVIDQEIDGEQTKIVKEQSN-- 515
                 KG   +  E +    Q++ +      Q  K T+   + +   Q KIV E+ +  
Sbjct: 843 IFLGYSKGVKAKDVEES---DQLQFDVEHETLQPKKSTETSSKTV---QEKIVYERQDEP 902

Query: 516 ---LSQYSLARDRQR-----------------TLPVIMNLVLL------RKLSCNDARRW 572
              L  YSLARDRQ+                  L V   +V +        ++ ++A +W
Sbjct: 903 TQGLESYSLARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQW 962

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BLAST of CSPI01G19040.1 vs. TrEMBL
Match: Q94LG0_ORYSJ (Putative retroelement pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g27910 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.5e-60
Identity = 159/447 (35.57%), Postives = 219/447 (48.99%), Query Frame = 1


Query: 318 EKQTDKEIKYLRADNGSEFCGEVFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKV 377
           E+QT+KE+K LR DNG EFC + F+ +C++ GI RH  + YTPQQN VAER+NRTI+ K 
Sbjct: 541 ERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKA 600

Query: 378 RCQLSDVILEEKFWVEVAAYAVYTLNRSPHTSLGLLTPEEKW-----------VSSCGT- 437
           RC LS+  + ++FW E A  A Y +NRSP   L   TP E W           V  C   
Sbjct: 601 RCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAY 660

Query: 438 ---------------------------------TNKKFIISRDVHFRETEMFMQGKGNTK 497
                                            TNK F+  R V F ++ MF     N  
Sbjct: 661 AHVDNGKLEPRAIKCLFLGYGSGVKRYKLWNPETNKTFM-RRSVVFNKSVMF-----NDS 720

Query: 498 RSTEATKTYTQIELENARNGAQFTKKTKVIDQEIDGEQTKIVKEQSNLSQ-YSLARDRQR 557
             T+     +  E +  ++     ++TK       G   ++++E   +   +S A   + 
Sbjct: 721 LPTDVIPGGSDEEQQYPQDEPIAHRRTK----RSCGAPVRLIEECDMVYYAFSCAEQVEN 780

Query: 558 TLPVIMNLVLLRKLSCNDARRWIEAMNEEINSLKVNDTWTLIPLPKECKPIASKWIYKLK 617
           TL           +   D  +WI AM EE+ SL+ N TW L+ LPK+ KP+  KWI+K K
Sbjct: 781 TLEPA---TYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRK 840

Query: 618 EGVT--------------------ELTTKAAFLHGYLDETIYMVQPKGFEVQGKEDLYCL 677
           EG++                    +L  K AFL+G L+E IYM QP+GF V GKED  C 
Sbjct: 841 EGLSSSEPPRFKASIVAMHDLELEQLDVKTAFLYGELEEEIYMDQPEGFIVPGKEDYVCK 900

[Close]

BLAST of CSPI01G19040.1 vs. TrEMBL
Match: A0A061GYD4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041944 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 134/440 (30.45%), Postives = 232/440 (52.73%), Query Frame = 1


Query: 5   RVEIEKFDGKRDFALWKAKIKALLGQQKAHKALLDSSELPTTLTAVQNEEMKLNAYGTLI 64
           + EIEKF+G+ DF+LW  K+ ALL QQ   KAL +   L + L+  + + +   A+  ++
Sbjct: 7   KYEIEKFNGRNDFSLWCVKMCALLVQQGLLKALKEKEHLLSNLSNGEKDNLMEKAHSAIL 66

Query: 65  LNLSDNVIRQVLEEETTHKIWKKLESLYATKDLSNKMYLREKFFTYKMDPSKSLTDNLDK 124
           L LSD VIR+V +EE+   +W KL+S+Y TK L N++Y++++ +T KM    S+  ++D+
Sbjct: 67  LALSDEVIREVTDEESAIAVWLKLKSIYMTKSLMNRLYIKQRLYTLKMSEGTSVNTHIDE 126

Query: 125 FKKIVSDFKSLEDKLSDDNEAFVLQNSLPEAYKEVKNSLKYGKDSAKTDVIISTLRTREL 184
           F +++ D K+++ K+ D++ A +L  SLP +Y+   +++ YG+D+   + + ++L ++EL
Sbjct: 127 FNRVILDLKNIDVKIEDEDLALILLCSLPPSYENFMDTMLYGRDTFTFEDVRASLNSKEL 186

Query: 185 KIQLSH--------KEHQSGNGLFVKANYV----NPFRKRD-------------WVLDSG 244
           K ++ H        K+ +  N      N V    + F + D             W+LD  
Sbjct: 187 KKKVGHFRQDCTKFKDDEKINKFVNTVNVVGDDFDTFEETDNVLTITNDNLMDTWILDLA 246

Query: 245 CTYHMTLFRAWFNTYKEISRESVFMGNNNACNIAGIGSVTMKLKDETVNLLRNVRHVPHL 304
           C +H+ L R WF+TY+ +   +V + ++ + ++ GIG++ +K+ D  V  L        L
Sbjct: 247 CCFHICLRRDWFSTYQSVDMGTVQLEDDFSLSVVGIGTIRIKMFDGMVRSLEG-----KL 306

Query: 305 KRNLISLGMLDSLGCEYKGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSEFCGE 364
             +L  L     +G        V        +VL    EKQT K I+  + D G EFC  
Sbjct: 307 SNDLYCL-----VGNTVIETVSVVSSNDPEDDVLT---EKQTKKRIESFQIDKGLEFCKG 366

Query: 365 VFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWVEVAAYAV 420
            F  F K   I R+  V  TP QN + E + +T++E+ +   S+V L + FW +    A 
Sbjct: 367 EFGLFYKNEKIVRYCTVVKTPHQNGIVEWMKKTLLERAKYMFSNVGLTKVFWTKAINKAC 426

[Close]

BLAST of CSPI01G19040.1 vs. TrEMBL
Match: Q01N60_ORYSA (OSIGBa0127D24.3 protein OS=Oryza sativa GN=OSIGBa0127D24.3 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.7e-51
Identity = 149/412 (36.17%), Postives = 211/412 (51.21%), Query Frame = 1


Query: 297 KGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSEFCGEVFNHFCKESGITRHKNV 356
           K K   F VF + K ++    E+QT++++K LR DNG EFC ++F  +CK  GI RH  V
Sbjct: 352 KHKYQAFDVFKEWKTMV----ERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTV 411

Query: 357 RYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWVEVAAYAVYTLNRSPHTSLGLLTPE 416
            +TPQQN VAER+NRTI+ K RC LS+  L ++FW E  + A Y +NRSP  ++   TP 
Sbjct: 412 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 471

Query: 417 EKWVSS---------------------------------------------CGTTNKKFI 476
           E W SS                                             C  T KK +
Sbjct: 472 EVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPET-KKVV 531

Query: 477 ISRDVHFRETEMFMQGKGNTKRSTEATKTYTQIELENARNGAQFTKKTKV-IDQE---ID 536
           I+R+V F E+ M +  K +T    E+ +    +++E+  +     +K  V I+Q+   I+
Sbjct: 532 INRNVVFHESVM-LHDKPSTNVPVESQEK-ASVQVEHLISSGHAPEKEDVAINQDAPVIE 591

Query: 537 GEQTKIVKEQSNLSQYSLARDRQR--TLP----------VIMNLVLLRKLSCN------- 596
              + IV++     + S+A+DR +  T P          V   L +  ++  N       
Sbjct: 592 DSDSSIVQQSP---KRSIAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYS 651

Query: 597 ------DARRWIEAMNEEINSLKVNDTWTLIPLPKECKPIASKWIYKLKEGVT---ELTT 625
                 D  RWI AM++E+ SL+ N TW L+ LPKE KPI  KWI+K KEG++   E   
Sbjct: 652 DAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARY 711

[Close]

BLAST of CSPI01G19040.1 vs. TrEMBL
Match: Q2QP43_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g35740 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 203/753 (26.96%), Postives = 323/753 (42.90%), Query Frame = 1


Query: 1   MVVARVEIEKFDGKRDFALWKAKIKALLGQQKAHKALLDSSELPTTLTAVQNEEMKLNAY 60
           MV  + ++   D K  F+LW+ K++A+L Q         + +L     +V N    ++ +
Sbjct: 1   MVSMKYDLPLLDYKTRFSLWQVKMRAVLAQ---------TLDLDEESGSVLNH---ISVF 60

Query: 61  GTLILNLSDNVIRQVLEEETTHKIWKKLESLYATKDLSNKMYLREKFFTYKMDPSKSLTD 120
             ++ +L    + Q  +E+    +   L S YA  +  + + L     T  +        
Sbjct: 61  KEIVADLVSMEV-QFDDEDLGLLLLCSLPSSYA--NFRDTILLSHDELT--LAEVYEALQ 120

Query: 121 NLDKFKKIV------SDFKSLEDKLSDDNEAFVLQNSLPEAYKEVKNSLKYGKDSAKTDV 180
           N +K K +V      S  ++L+ +   +   +   N   ++    K   KY K       
Sbjct: 121 NREKMKGMVQSDASSSKGEALQVRGRFERRTYNDSNDHDKSQSRGKKLCKYCKKKNHFIE 180

Query: 181 IISTLRTRELK-------IQLSHKEHQSGNGLFVKANYVNPFRKRDWVLDSGCTYHMTLF 240
               L+ +E +       +  S     SG+ L V A  V      +W+LD+ C++H+ + 
Sbjct: 181 ECWNLQNKEKRKSDGKASVVTSADNSDSGDCLVVFAGCVA--NHDEWILDTACSFHICIN 240

Query: 241 RAWFNTYKEISRESVF-MGNNNACNIAGIGSVTMKLKDETVNLLRNVRHVPHLKRNLISL 300
           R WF++YK +    V  MG++N   I GIGSV +K  D     L+ VRH+P + RNLISL
Sbjct: 241 RDWFSSYKSVQNGDVVRMGDDNPRVIMGIGSVQIKTHDGMTRTLKYVRHIPGMARNLISL 300

Query: 301 GMLDSLGCEYKGKC--GVFQVFMDSKE---------VLVGGKEKQTDKEIKYLRADNGS- 360
             LD+ G +Y G    G       SK+         + +G   +    E+      +G  
Sbjct: 301 STLDAEGYKYSGSTLHGSVTAAAVSKDEASRTNLWHMRLGHMSELGIAELMKRNLLDGCT 360

Query: 361 ----EFCG----EVFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKVRCQLSDVIL 420
               +FC     + F+ +C++ GI RH  + YTPQQN VA+R+NRTI+ + RC LS+  +
Sbjct: 361 QGNMKFCEHCVFDAFDDYCRKEGIVRHHTIPYTPQQNGVAKRMNRTIISEARCLLSNARM 420

Query: 421 EEKFWVEVAAYAVYTLNRSPHTSLGLLTPEEKW-----------VSSC------------ 480
            ++FW E A  A Y +NRSP   L   TP E W           V  C            
Sbjct: 421 NKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLE 480

Query: 481 ----------------------GTTNKKFIISRDVHFRETEMFMQGKGNT--KRSTEATK 540
                                   TNK F+ SR V F E+ MF            ++  +
Sbjct: 481 PRAIKCLFLSYGSGVKGYKLWNPQTNKTFM-SRSVVFNESIMFNDSLPTDVIPGGSDEEQ 540

Query: 541 TYTQIELENARNGAQFTKKTKVIDQEID--------------------------GEQTKI 600
            Y  +++E+  +     ++T+++  +I+                          G   ++
Sbjct: 541 QYVSVQVEHVDD-----QETEIVGNDINDIVQHSPPVLQPQDEPIAHRRTKRSCGAPVRL 600

Query: 601 VKEQSNLSQY--SLARDRQRTLPVIMNLVLLRKLSCNDARRWIEAMNEEINSLKVNDTWT 625
           + E+ ++  Y  S A   + TL           +   D  + I AM EE+ SL+ N TW 
Sbjct: 601 I-EKCDMVYYAFSCAEQVENTLEPA---TYTEAIVSGDREKSISAMQEEMQSLEKNGTWE 660

[Close]

BLAST of CSPI01G19040.1 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.7e-08
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 678 QLPRFEGKTYRRWSQQMKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELKDARKK 735
           Q+P      Y  WS +MK + G+ D+W+IV+ G+ EPE+E  LS  Q + L+D+RK+
Sbjct: 9   QVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 65

[Close]

BLAST of CSPI01G19040.1 vs. NCBI nr
Match: gi|147777710|emb|CAN69096.1| (hypothetical protein VITISV_025437 [Vitis vinifera])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 183/578 (31.66%), Postives = 298/578 (51.56%), Query Frame = 1


Query: 36  ALLDSSELPTTLTAVQNEEMKLNAYGTLILNLSDNVIRQVLEEETTHKIWKKLESLYATK 95
           ALL    LP+T+   Q  E+   A+  +IL+LSD V+R+V + ++  K+W KLESLY TK
Sbjct: 423 ALLGEKNLPSTMQEKQKIELLEEAHSAIILSLSDTVLREVAKAKSATKLWLKLESLYMTK 482

Query: 96  DLSNKMYLREKFFTYKMDPSKSLTDNLDKFKKIVSDFKSLEDKLSDDNEAFVLQNSLPEA 155
            L+N+++ + K +T+KM    S+ ++LD F KI+ D ++++  + D+++A +L  SL  +
Sbjct: 483 SLANRLHKKIKLYTFKMTTGMSIEEHLDHFNKIILDLENIDITILDEDKAILLLTSLDAS 542

Query: 156 YKEVKNSLKYGKDSAKTDVIISTLRTRELKIQLSHKEHQSGNGLFVKANYVNPFRKRDWV 215
           Y  +K ++ YG+DS   D    T  ++E +          G       N       ++W+
Sbjct: 543 YTNMKEAIMYGRDSLTFDE--ETKHSQENREWGDAAVILDGYDSAEMLNVAEMDSSKEWI 602

Query: 216 LDSGCTYHMTLFRAWFNTYKEISRESVFMGNNNACNIAGIGSVTMKLKDETVNLLRNVRH 275
           LDSGC++HM   +AWF  +KE     V  G+N    I G  +V +K  D    +L++V++
Sbjct: 603 LDSGCSFHMCPIKAWFKDFKEADGGYVIQGSNEHYKILGTDTVRIKHYDGIERVLKDVKY 662

Query: 276 VPHLKRNLISLGMLDSLGCEYKGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSE 335
           +P LKRNLISLGMLD+ G  ++ +    +V   S  ++ G  +      I  +     S 
Sbjct: 663 IPELKRNLISLGMLDNSGYTFESEPNSLRVARGSLTIMKGTIKNGLYTFIGQIVTGKVST 722

Query: 336 FCGE---VFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWV 395
              E     N + +  GI  H+ VRYTPQQN +AER+NRTI+E+VRC LS   L + FW 
Sbjct: 723 VPKEDVGTTNLWHQRLGIATHRTVRYTPQQNALAERMNRTILERVRCMLSSSGLSKVFWA 782

Query: 396 EVAAYAVYTLNRSPHTSLGLLTPEEKWVSSCGTTN--KKFIISRDVHFRETEMFMQ---- 455
           E     V+ +N+S  ++L L TP+EKW          K F  +  VH +  ++  +    
Sbjct: 783 ETVETTVHLINKSLSSALQLKTPQEKWTGKYADYQYLKVFGCTAYVHTKTNKLESRVVKC 842

Query: 456 -----GKGNTKRSTEATKTYTQIELENARNGAQFTKKTKVIDQEIDGEQTKIVKEQSN-- 515
                 KG   +  E +    Q++ +      Q  K T+   + +   Q KIV E+ +  
Sbjct: 843 IFLGYSKGVKAKDVEES---DQLQFDVEHETLQPKKSTETSSKTV---QEKIVYERQDEP 902

Query: 516 ---LSQYSLARDRQR-----------------TLPVIMNLVLL------RKLSCNDARRW 572
              L  YSLARDRQ+                  L V   +V +        ++ ++A +W
Sbjct: 903 TQGLESYSLARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQW 962

[Close]

BLAST of CSPI01G19040.1 vs. NCBI nr
Match: gi|14029020|gb|AAK52561.1|AC079853_14 (Putative retroelement pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 241.9 bits (616), Expect = 3.5e-60
Identity = 159/447 (35.57%), Postives = 219/447 (48.99%), Query Frame = 1


Query: 318 EKQTDKEIKYLRADNGSEFCGEVFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKV 377
           E+QT+KE+K LR DNG EFC + F+ +C++ GI RH  + YTPQQN VAER+NRTI+ K 
Sbjct: 541 ERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKA 600

Query: 378 RCQLSDVILEEKFWVEVAAYAVYTLNRSPHTSLGLLTPEEKW-----------VSSCGT- 437
           RC LS+  + ++FW E A  A Y +NRSP   L   TP E W           V  C   
Sbjct: 601 RCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAY 660

Query: 438 ---------------------------------TNKKFIISRDVHFRETEMFMQGKGNTK 497
                                            TNK F+  R V F ++ MF     N  
Sbjct: 661 AHVDNGKLEPRAIKCLFLGYGSGVKRYKLWNPETNKTFM-RRSVVFNKSVMF-----NDS 720

Query: 498 RSTEATKTYTQIELENARNGAQFTKKTKVIDQEIDGEQTKIVKEQSNLSQ-YSLARDRQR 557
             T+     +  E +  ++     ++TK       G   ++++E   +   +S A   + 
Sbjct: 721 LPTDVIPGGSDEEQQYPQDEPIAHRRTK----RSCGAPVRLIEECDMVYYAFSCAEQVEN 780

Query: 558 TLPVIMNLVLLRKLSCNDARRWIEAMNEEINSLKVNDTWTLIPLPKECKPIASKWIYKLK 617
           TL           +   D  +WI AM EE+ SL+ N TW L+ LPK+ KP+  KWI+K K
Sbjct: 781 TLEPA---TYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRK 840

Query: 618 EGVT--------------------ELTTKAAFLHGYLDETIYMVQPKGFEVQGKEDLYCL 677
           EG++                    +L  K AFL+G L+E IYM QP+GF V GKED  C 
Sbjct: 841 EGLSSSEPPRFKASIVAMHDLELEQLDVKTAFLYGELEEEIYMDQPEGFIVPGKEDYVCK 900

[Close]

BLAST of CSPI01G19040.1 vs. NCBI nr
Match: gi|590589905|ref|XP_007016583.1| (Uncharacterized protein TCM_041944 [Theobroma cacao])

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-53
Identity = 134/440 (30.45%), Postives = 232/440 (52.73%), Query Frame = 1


Query: 5   RVEIEKFDGKRDFALWKAKIKALLGQQKAHKALLDSSELPTTLTAVQNEEMKLNAYGTLI 64
           + EIEKF+G+ DF+LW  K+ ALL QQ   KAL +   L + L+  + + +   A+  ++
Sbjct: 7   KYEIEKFNGRNDFSLWCVKMCALLVQQGLLKALKEKEHLLSNLSNGEKDNLMEKAHSAIL 66

Query: 65  LNLSDNVIRQVLEEETTHKIWKKLESLYATKDLSNKMYLREKFFTYKMDPSKSLTDNLDK 124
           L LSD VIR+V +EE+   +W KL+S+Y TK L N++Y++++ +T KM    S+  ++D+
Sbjct: 67  LALSDEVIREVTDEESAIAVWLKLKSIYMTKSLMNRLYIKQRLYTLKMSEGTSVNTHIDE 126

Query: 125 FKKIVSDFKSLEDKLSDDNEAFVLQNSLPEAYKEVKNSLKYGKDSAKTDVIISTLRTREL 184
           F +++ D K+++ K+ D++ A +L  SLP +Y+   +++ YG+D+   + + ++L ++EL
Sbjct: 127 FNRVILDLKNIDVKIEDEDLALILLCSLPPSYENFMDTMLYGRDTFTFEDVRASLNSKEL 186

Query: 185 KIQLSH--------KEHQSGNGLFVKANYV----NPFRKRD-------------WVLDSG 244
           K ++ H        K+ +  N      N V    + F + D             W+LD  
Sbjct: 187 KKKVGHFRQDCTKFKDDEKINKFVNTVNVVGDDFDTFEETDNVLTITNDNLMDTWILDLA 246

Query: 245 CTYHMTLFRAWFNTYKEISRESVFMGNNNACNIAGIGSVTMKLKDETVNLLRNVRHVPHL 304
           C +H+ L R WF+TY+ +   +V + ++ + ++ GIG++ +K+ D  V  L        L
Sbjct: 247 CCFHICLRRDWFSTYQSVDMGTVQLEDDFSLSVVGIGTIRIKMFDGMVRSLEG-----KL 306

Query: 305 KRNLISLGMLDSLGCEYKGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSEFCGE 364
             +L  L     +G        V        +VL    EKQT K I+  + D G EFC  
Sbjct: 307 SNDLYCL-----VGNTVIETVSVVSSNDPEDDVLT---EKQTKKRIESFQIDKGLEFCKG 366

Query: 365 VFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWVEVAAYAV 420
            F  F K   I R+  V  TP QN + E + +T++E+ +   S+V L + FW +    A 
Sbjct: 367 EFGLFYKNEKIVRYCTVVKTPHQNGIVEWMKKTLLERAKYMFSNVGLTKVFWTKAINKAC 426

[Close]

BLAST of CSPI01G19040.1 vs. NCBI nr
Match: gi|116317760|emb|CAH65740.1| (OSIGBa0127D24.3 [Oryza sativa Indica Group])

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-51
Identity = 149/412 (36.17%), Postives = 211/412 (51.21%), Query Frame = 1


Query: 297 KGKCGVFQVFMDSKEVLVGGKEKQTDKEIKYLRADNGSEFCGEVFNHFCKESGITRHKNV 356
           K K   F VF + K ++    E+QT++++K LR DNG EFC ++F  +CK  GI RH  V
Sbjct: 352 KHKYQAFDVFKEWKTMV----ERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTV 411

Query: 357 RYTPQQNMVAERLNRTIMEKVRCQLSDVILEEKFWVEVAAYAVYTLNRSPHTSLGLLTPE 416
            +TPQQN VAER+NRTI+ K RC LS+  L ++FW E  + A Y +NRSP  ++   TP 
Sbjct: 412 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 471

Query: 417 EKWVSS---------------------------------------------CGTTNKKFI 476
           E W SS                                             C  T KK +
Sbjct: 472 EVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPET-KKVV 531

Query: 477 ISRDVHFRETEMFMQGKGNTKRSTEATKTYTQIELENARNGAQFTKKTKV-IDQE---ID 536
           I+R+V F E+ M +  K +T    E+ +    +++E+  +     +K  V I+Q+   I+
Sbjct: 532 INRNVVFHESVM-LHDKPSTNVPVESQEK-ASVQVEHLISSGHAPEKEDVAINQDAPVIE 591

Query: 537 GEQTKIVKEQSNLSQYSLARDRQR--TLP----------VIMNLVLLRKLSCN------- 596
              + IV++     + S+A+DR +  T P          V   L +  ++  N       
Sbjct: 592 DSDSSIVQQSP---KRSIAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYS 651

Query: 597 ------DARRWIEAMNEEINSLKVNDTWTLIPLPKECKPIASKWIYKLKEGVT---ELTT 625
                 D  RWI AM++E+ SL+ N TW L+ LPKE KPI  KWI+K KEG++   E   
Sbjct: 652 DAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARY 711

[Close]

BLAST of CSPI01G19040.1 vs. NCBI nr
Match: gi|77556671|gb|ABA99467.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-50
Identity = 203/753 (26.96%), Postives = 323/753 (42.90%), Query Frame = 1


Query: 1   MVVARVEIEKFDGKRDFALWKAKIKALLGQQKAHKALLDSSELPTTLTAVQNEEMKLNAY 60
           MV  + ++   D K  F+LW+ K++A+L Q         + +L     +V N    ++ +
Sbjct: 1   MVSMKYDLPLLDYKTRFSLWQVKMRAVLAQ---------TLDLDEESGSVLNH---ISVF 60

Query: 61  GTLILNLSDNVIRQVLEEETTHKIWKKLESLYATKDLSNKMYLREKFFTYKMDPSKSLTD 120
             ++ +L    + Q  +E+    +   L S YA  +  + + L     T  +        
Sbjct: 61  KEIVADLVSMEV-QFDDEDLGLLLLCSLPSSYA--NFRDTILLSHDELT--LAEVYEALQ 120

Query: 121 NLDKFKKIV------SDFKSLEDKLSDDNEAFVLQNSLPEAYKEVKNSLKYGKDSAKTDV 180
           N +K K +V      S  ++L+ +   +   +   N   ++    K   KY K       
Sbjct: 121 NREKMKGMVQSDASSSKGEALQVRGRFERRTYNDSNDHDKSQSRGKKLCKYCKKKNHFIE 180

Query: 181 IISTLRTRELK-------IQLSHKEHQSGNGLFVKANYVNPFRKRDWVLDSGCTYHMTLF 240
               L+ +E +       +  S     SG+ L V A  V      +W+LD+ C++H+ + 
Sbjct: 181 ECWNLQNKEKRKSDGKASVVTSADNSDSGDCLVVFAGCVA--NHDEWILDTACSFHICIN 240

Query: 241 RAWFNTYKEISRESVF-MGNNNACNIAGIGSVTMKLKDETVNLLRNVRHVPHLKRNLISL 300
           R WF++YK +    V  MG++N   I GIGSV +K  D     L+ VRH+P + RNLISL
Sbjct: 241 RDWFSSYKSVQNGDVVRMGDDNPRVIMGIGSVQIKTHDGMTRTLKYVRHIPGMARNLISL 300

Query: 301 GMLDSLGCEYKGKC--GVFQVFMDSKE---------VLVGGKEKQTDKEIKYLRADNGS- 360
             LD+ G +Y G    G       SK+         + +G   +    E+      +G  
Sbjct: 301 STLDAEGYKYSGSTLHGSVTAAAVSKDEASRTNLWHMRLGHMSELGIAELMKRNLLDGCT 360

Query: 361 ----EFCG----EVFNHFCKESGITRHKNVRYTPQQNMVAERLNRTIMEKVRCQLSDVIL 420
               +FC     + F+ +C++ GI RH  + YTPQQN VA+R+NRTI+ + RC LS+  +
Sbjct: 361 QGNMKFCEHCVFDAFDDYCRKEGIVRHHTIPYTPQQNGVAKRMNRTIISEARCLLSNARM 420

Query: 421 EEKFWVEVAAYAVYTLNRSPHTSLGLLTPEEKW-----------VSSC------------ 480
            ++FW E A  A Y +NRSP   L   TP E W           V  C            
Sbjct: 421 NKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLE 480

Query: 481 ----------------------GTTNKKFIISRDVHFRETEMFMQGKGNT--KRSTEATK 540
                                   TNK F+ SR V F E+ MF            ++  +
Sbjct: 481 PRAIKCLFLSYGSGVKGYKLWNPQTNKTFM-SRSVVFNESIMFNDSLPTDVIPGGSDEEQ 540

Query: 541 TYTQIELENARNGAQFTKKTKVIDQEID--------------------------GEQTKI 600
            Y  +++E+  +     ++T+++  +I+                          G   ++
Sbjct: 541 QYVSVQVEHVDD-----QETEIVGNDINDIVQHSPPVLQPQDEPIAHRRTKRSCGAPVRL 600

Query: 601 VKEQSNLSQY--SLARDRQRTLPVIMNLVLLRKLSCNDARRWIEAMNEEINSLKVNDTWT 625
           + E+ ++  Y  S A   + TL           +   D  + I AM EE+ SL+ N TW 
Sbjct: 601 I-EKCDMVYYAFSCAEQVENTLEPA---TYTEAIVSGDREKSISAMQEEMQSLEKNGTWE 660

The following BLAST results are available for this feature:

BLAST of CSPI01G19040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	2.9e-22	29.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.7e-14	38.40	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of CSPI01G19040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AJF1_VITVI	8.2e-72	31.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025437 PE=4 SV=1	[more]
Q94LG0_ORYSJ	2.5e-60	35.57	Putative retroelement pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os0...	[more]
A0A061GYD4_THECC	1.3e-53	30.45	Uncharacterized protein OS=Theobroma cacao GN=TCM_041944 PE=4 SV=1	[more]
Q01N60_ORYSA	2.7e-51	36.17	OSIGBa0127D24.3 protein OS=Oryza sativa GN=OSIGBa0127D24.3 PE=4 SV=1	[more]
Q2QP43_ORYSJ	1.8e-50	26.96	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]

BLAST of CSPI01G19040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48720.1	9.7e-08	42.11	unknown protein	[more]

BLAST of CSPI01G19040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147777710\|emb\|CAN69096.1\|	1.2e-71	31.66	hypothetical protein VITISV_025437 [Vitis vinifera]	[more]
gi\|14029020\|gb\|AAK52561.1\|AC079853_14	3.5e-60	35.57	Putative retroelement pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|590589905\|ref\|XP_007016583.1\|	1.9e-53	30.45	Uncharacterized protein TCM_041944 [Theobroma cacao]	[more]
gi\|116317760\|emb\|CAH65740.1\|	3.9e-51	36.17	OSIGBa0127D24.3 [Oryza sativa Indica Group]	[more]
gi\|77556671\|gb\|ABA99467.1\|	2.5e-50	26.96	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR013103	RVT_2

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:1901363	heterocyclic compound binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G19040	CSPI01G19040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G19040.1	CSPI01G19040.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G19040.1.cds1	CSPI01G19040.1.cds1	CDS
CSPI01G19040.1.cds2	CSPI01G19040.1.cds2	CDS
CSPI01G19040.1.cds3	CSPI01G19040.1.cds3	CDS
CSPI01G19040.1.cds4	CSPI01G19040.1.cds4	CDS
CSPI01G19040.1.cds5	CSPI01G19040.1.cds5	CDS
CSPI01G19040.1.cds6	CSPI01G19040.1.cds6	CDS
CSPI01G19040.1.cds7	CSPI01G19040.1.cds7	CDS
CSPI01G19040.1.cds8	CSPI01G19040.1.cds8	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 320..376 score: 2.
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 326..423 score: 15
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 325..415 score: 1.7
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 323..417 score: 4.05
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 575..630 score: 2.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 7..676 score: 1.0E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 7..676 score: 1.0E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 55..184 score: 2.5