CSPI01G16220.3 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGAAATTTAAAAAGATAAACCGCATCCCGTTTAACTTCAGCCCTTTTGTAAAAAACAAACCCTAACTACTCGTCTACGCTCTCCTCTAGTTCCCTCCATCAGACGACGCCGGCGACTGCCACTCACCACGCTGGCGACTGCCACTCCGATCACATCAGCCGCACTCGCCCTCCGTTTTGGTTCTCAGTTTAAAGGTTTTTCCCTCTTCTTTTTTTTCTTTTTCTTTTTTGTGCATCAATCTTTGAGTAGCGTTTCTGGTTTGAAAGAACACATATATGCTTTTTTATTCATTACTTCATATTAATATGTATTCCCATCCTAGATGTTGAAATTTATATGAAACATAGTTTAGGCCTTGGGCTTTTGTGGTTAAATAATTGATGAGTATTTTTTATTCATTATAACGTGTCTCTAAATGTGTCTTGTCTTACTTTTCTAGAAATTGGATGTATCGTAACGTCTTGTCTCCCGTTGGTGTTCATGCTTCCTAGGAAGTGGGTATCATCAAATAATTATTCAATTAGAGGATTAGTGGAAAATGACACTCAAGATCAATAAAGGTTTATTTGAATGGCTTGTGTGATGCCATTTGGCTTATTGTTGCTCCTAGCACTTTCACGAGGTTAATGAACAAGGTCCTTCATCCATTTCCTTTACAAATTTCTTGCTATATATTTTGTTGACATATTATTTATAGTTTACAGCACTACTTTGATGACATTTAGTTATAGTTTATAGCAAAACTACAAAAGAAAATTTGGAACACCTAAATTGCCTTTTGACAATATAGCAACTATACATCAGCCCCAAAAAATTCCATATCCTTATTGGTGAAACACTTCCTTGGTTTTATCAATGGGGATTTGGGAATTTAGGTTGACACTAACAAGATTCAAGCCATTACTGATTGGCCCCCACCAAAGTTTGTCAAAGACGTTCAAACTTTTCTTAGTTTTGCTTCTTATAAAAAGTTCATAAAAACTTTTAATTTTGTTACTACTCCCTTGACAAATTGCTTGAGAAAAGGAAATTTTGAATGGGGGTTCTGATCAACTAAATATTATATATTTTGTTCAAAATAAATTAGCGAATAGCCTATTTTTCTGTCTTTACACTTCCTTTGAATTGTCCAGGGATGCTTGTGGTGTAAAGTAAGAGTTGGGATGTTTTGTCTCGAAACGACCATACTATTCAATATTTTAGTGAGAAACTCATGCTCTCTAACAGAGTTGGTGCGAGTGTGGTTTACAGGATTGGGTTAGGTGTGGCTTGTGATTCTGTACTTTTATCTGTTGGGGGATATTTTGTGTTGGTCTTTTTATTCATATTTTGTATAACCTCGATCTCCTCTGAGATGCCTTAGCCTTATCCTCCATTTGGAACAGTAAAATCTCCCTGAAGGTCAAATTCTTTGTCTTATGTTTGACTTTGGAAATTAATACCCTGGACCAAAGACAATTTCCTTTTGTGCTTGTCCCGCAATGGCACATTCTTTGCAGTAGGCAGGTTAAGGATATTGACTAATTCTGTGGATGCCAATTTGCTCATTCCCTGTGGAATACTTGAGTCTGTTCGGGTGGCTAAAGGCAGAGGTTGCAGGGCTACTGATTGTGGAGGTGCTTCCAGTGTTAAGACGCAGCTGGGTGAGAGGTGTGAGGCCTTAACGCCTTGGAAGTACCCAAGGTGAGCACCTTTTGTAAGGTAAGGTGCTTGCCTTTTGCGTGAATCCAGGTGCTTGTGGTGTAAACCAAAGAATACTTTTGATTGAATGTACAATCTGCCTCTCAATGTGAAAGGAAATGCTTTTTTATTTATAGAGAAAAAGTTTGTCGTCTCGTGCACCTTGGGCATTGAAAATACTGGGTGCTTTTGAACCCTTCATTACAGGATAATGGCAAACTTCTGTGACAGACTTGTTTCTTTGGAGTGTTGGGGAATTTGATTTGAGAGGAAAAACATAACCTTCTAGATAGATCGGGGAGGTAGTTAAGTATAATACGTTCTTATGGGCATTTGCCACCTAACCTTTTTTTTTAAATTATGAGCTCGAACAGAGTTGGAGGGGAAAAAAAAGTTGGAGCAATTGTGGTTTACAGCATTGCTTTTTGTCATTGTTAACTGCTTTGTTTTGGGCCCCCTGCTTTTTTGTATTTATCCTACCAATTTGGTTGTACATCTTCTGATATTCTCATTTTTCCTCTTTTGCTTGTTATCTTTATCGGTTCTGTTTCCTTCTCAGTTGGTCATCTTCTGTTTTGGTATTTTCTCCGATGTTTATAATGCTTAAGGCGGCTTTTACGCTTTTCTTCTTGAAGAGATGAGACGTAAGCCCAAAATAATGAATAAAAAACATTATAAAAATCTTCCATCGGTATGACAAGTACTATTCAACATGATTGTGGTATGACAAGTACTACTAAACATGCTTGTCCTATAAAAGTGGAAAATTAGCTCCCACAATTTTCACTTGCTCCTGGATTCTAAAAGGATATCTTTATCATCACTATTACTACTACTATCATGGGTTACTATCAGGATTCTAAACCATCATGAGTTGGTCTCAATATCTAACTAAGAGGTCATATCAATCTATGGTGGCCACCTTAGTAAGAATTAATTTCTTATGAGTTTCCTTGATACACAAATGTTGTAGGGTCAGGCGGGTTGTTCCATGAGATTAGTTGGGGTGCGCGTAAGCTAGCAACACTTACGAATATAAAAAAACATCACTAATACTATTATCAATTTTTTTTTTTGGAACTACTACTATTATCAATTAATACTATAATTTCTGCGAGCAATGTTTTTAAAGTAACAACAGTAAAAGTAGTCTTAATTCAAATTGTCACAACTCAAAGCTTAATATTTTGAAGAAGCTAGGCTAATCACTGTTATTTTTTTTAATTATTAGACGAGGCGCATAGATTCTAAGTCTCGAAGTATTTTCACTAAGGCGTTAGCTTCTTCTATGAGAGGTGTAAACGAAGGTGTAAGTCTTGAGGTTAAAACTTAGAATTTTGTCTCAAGGCGAGCCTCAAGACATAAACCTCTATAGCTTTTCGAATCATTGCTTTATTCCATATTGTACTCTGGATATTTTATTCAAGTATGGCCGTGATTCTCTTGGATTGGATTCCTTTTATGCTGTAATGTGGTTCCTCCTTTTCTGTAGTTACGTGATTTCTCCTTTTTTGTGCGCTTTGTTTTTTTGTATGCAATTGTTTTTTCTGTCATTTTCCCCAAACCTTGTTTTAAAACTTATATATATACAAGTTCCCAAATCTTGTTTTTCTGTCATTTTTCCCAGCTGATCTCCAAGTATATGGAACTTGACTTTCATTTGTTTTTAGACACTGTAACTCAAACACTTCTAATATTAGCAGGTCATTTGGTTTTGCCATGGATTCTAGCACCAGTGGTGGCAGTTATCACACACAGCCCAAATGGAGAAAAGTGGCATATGGAGGTATGCAGCCTGGGTTTGATGACAACCACACTGACGAGTCTTTTCTTGAAGATATTGTCATGAATGCCAATGTCGTCAAGAGAGATATCCTAAAGGTGATGCTGGACTCTGTTTCCATATCCGAATATCTGTGCATTGTCACCCTTGTTGGCTTGGTTTGGACATACACACTTAGATCAACTCTTGATGAGAATTCCCTCTTATTTCTTGACATTGGTCTTCTTGGTTCAGGATTCTTAATTCTTCTTTTCACTGAAGGCTCACTCTCATTGAGCCTTCTCTTACACTATATTCTTAATATATCCTATTTCACAACTGGGTTGTATGTCTTGGCCCCCATATATCAAACTCTAACTAGATCCATTAGCTCAGATTCCATATGGGCATTGTCAGTTTCACTTATTATCCTCCATCTTTTCCTACATGATTACTCAGGTTCCACTGTTAGGGCTCCAGGGGATGTTAAGAATCCAAGCTTAACCAGTTGTATTTCTTTGAATGCTTCTATTGTGGCCTCTGTTCTTATTGCTTCACGTCTTCCATCTCGGTCACATGTGTTTGCCATAATGTTGTTCTCTTTGCAAGTTTTCCTTTTTGCTCCACTGGTTTTTTATTCTATTAAGAAGTTTTCTCTTCATCTTCATCTCTTATTTTCTTTCTGTTTAGTAACAATTACTTTGGTTTACGTTTATTTCTTACACCAGCTATTTTTTATTTTGTTGGCTAGTCTTTTGATTTTTGTAACCATAGTTTGTCCTTATTGGCTCATACGAATCCAGGAATTTAAGTTTGAGATCAATGGTCCCTGGGATGAGGCCAAGCTTTGTTTTGATATTAGAGACTGAGATTATCTTTGTTTTGTATAGAAAGATTAGTTCGATGAAGGTCAAATTGAAATTATATTTTGAATGTTTATAGTTAAAAATTCGTG ATGGATTCTAGCACCAGTGGTGGCAGTTATCACACACAGCCCAAATGGAGAAAAGTGGCATATGGAGGTATGCAGCCTGGGTTTGATGACAACCACACTGACGAGTCTTTTCTTGAAGATATTGTCATGAATGCCAATGTCGTCAAGAGAGATATCCTAAAGGTGATGCTGGACTCTGTTTCCATATCCGAATATCTGTGCATTGTCACCCTTGTTGGCTTGGTTTGGACATACACACTTAGATCAACTCTTGATGAGAATTCCCTCTTATTTCTTGACATTGGTCTTCTTGGTTCAGGATTCTTAATTCTTCTTTTCACTGAAGGCTCACTCTCATTGAGCCTTCTCTTACACTATATTCTTAATATATCCTATTTCACAACTGGGTTGTATGTCTTGGCCCCCATATATCAAACTCTAACTAGATCCATTAGCTCAGATTCCATATGGGCATTGTCAGTTTCACTTATTATCCTCCATCTTTTCCTACATGATTACTCAGGTTCCACTGTTAGGGCTCCAGGGGATGTTAAGAATCCAAGCTTAACCAGTTGTATTTCTTTGAATGCTTCTATTGTGGCCTCTGTTCTTATTGCTTCACGTCTTCCATCTCGGTCACATGTGTTTGCCATAATGTTGTTCTCTTTGCAAGTTTTCCTTTTTGCTCCACTGGTTTTTTATTCTATTAAGAAGTTTTCTCTTCATCTTCATCTCTTATTTTCTTTCTGTTTAGTAACAATTACTTTGGTTTACGTTTATTTCTTACACCAGCTATTTTTTATTTTGTTGGCTAGTCTTTTGATTTTTGTAACCATAGTTTGTCCTTATTGGCTCATACGAATCCAGGAATTTAAGTTTGAGATCAATGGTCCCTGGGATGAGGCCAAGCTTTGTTTTGATATTAGAGACTGA ATGGATTCTAGCACCAGTGGTGGCAGTTATCACACACAGCCCAAATGGAGAAAAGTGGCATATGGAGGTATGCAGCCTGGGTTTGATGACAACCACACTGACGAGTCTTTTCTTGAAGATATTGTCATGAATGCCAATGTCGTCAAGAGAGATATCCTAAAGGTGATGCTGGACTCTGTTTCCATATCCGAATATCTGTGCATTGTCACCCTTGTTGGCTTGGTTTGGACATACACACTTAGATCAACTCTTGATGAGAATTCCCTCTTATTTCTTGACATTGGTCTTCTTGGTTCAGGATTCTTAATTCTTCTTTTCACTGAAGGCTCACTCTCATTGAGCCTTCTCTTACACTATATTCTTAATATATCCTATTTCACAACTGGGTTGTATGTCTTGGCCCCCATATATCAAACTCTAACTAGATCCATTAGCTCAGATTCCATATGGGCATTGTCAGTTTCACTTATTATCCTCCATCTTTTCCTACATGATTACTCAGGTTCCACTGTTAGGGCTCCAGGGGATGTTAAGAATCCAAGCTTAACCAGTTGTATTTCTTTGAATGCTTCTATTGTGGCCTCTGTTCTTATTGCTTCACGTCTTCCATCTCGGTCACATGTGTTTGCCATAATGTTGTTCTCTTTGCAAGTTTTCCTTTTTGCTCCACTGGTTTTTTATTCTATTAAGAAGTTTTCTCTTCATCTTCATCTCTTATTTTCTTTCTGTTTAGTAACAATTACTTTGGTTTACGTTTATTTCTTACACCAGCTATTTTTTATTTTGTTGGCTAGTCTTTTGATTTTTGTAACCATAGTTTGTCCTTATTGGCTCATACGAATCCAGGAATTTAAGTTTGAGATCAATGGTCCCTGGGATGAGGCCAAGCTTTGTTTTGATATTAGAGACTGA
BLAST of CSPI01G16220.3 vs. Swiss-Prot
Match: PIGC_DICDI (Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 3.9e-37 Identity = 102/296 (34.46%), Postives = 176/296 (59.46%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. Swiss-Prot
Match: PIGC_HUMAN (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Homo sapiens GN=PIGC PE=2 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.2e-23 Identity = 93/295 (31.53%), Postives = 156/295 (52.88%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. Swiss-Prot
Match: PIGC_MOUSE (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Mus musculus GN=Pigc PE=2 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22 Identity = 93/299 (31.10%), Postives = 155/299 (51.84%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. Swiss-Prot
Match: PIGC_RAT (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.6e-22 Identity = 91/299 (30.43%), Postives = 153/299 (51.17%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. Swiss-Prot
Match: PIGC_BOVIN (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Bos taurus GN=PIGC PE=2 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 6.0e-22 Identity = 88/291 (30.24%), Postives = 150/291 (51.55%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. TrEMBL
Match: A0A0A0LTI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G196250 PE=4 SV=1) HSP 1 Score: 571.2 bits (1471), Expect = 7.3e-160 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. TrEMBL
Match: A0A061EMI1_THECC (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative isoform 1 OS=Theobroma cacao GN=TCM_021016 PE=4 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.5e-128 Identity = 241/303 (79.54%), Postives = 275/303 (90.76%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. TrEMBL
Match: A0A061EVD3_THECC (Phosphatidylinositolglycan synthase family protein isoform 2 OS=Theobroma cacao GN=TCM_021016 PE=4 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.5e-128 Identity = 241/303 (79.54%), Postives = 275/303 (90.76%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. TrEMBL
Match: W9QRM8_9ROSA (Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Morus notabilis GN=L484_020865 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.2e-122 Identity = 234/303 (77.23%), Postives = 264/303 (87.13%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. TrEMBL
Match: V4U7D5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016094mg PE=4 SV=1) HSP 1 Score: 446.4 bits (1147), Expect = 2.7e-122 Identity = 229/290 (78.97%), Postives = 260/290 (89.66%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. TAIR10
Match: AT2G34980.1 (AT2G34980.1 phosphatidylinositolglycan synthase family protein) HSP 1 Score: 427.9 bits (1099), Expect = 5.1e-120 Identity = 227/304 (74.67%), Postives = 266/304 (87.50%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. NCBI nr
Match: gi|449465417|ref|XP_004150424.1| (PREDICTED: putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C [Cucumis sativus]) HSP 1 Score: 571.2 bits (1471), Expect = 1.1e-159 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. NCBI nr
Match: gi|659118158|ref|XP_008458976.1| (PREDICTED: putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C isoform X2 [Cucumis melo]) HSP 1 Score: 560.5 bits (1443), Expect = 1.9e-156 Identity = 296/303 (97.69%), Postives = 300/303 (99.01%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. NCBI nr
Match: gi|659118156|ref|XP_008458975.1| (PREDICTED: putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C isoform X1 [Cucumis melo]) HSP 1 Score: 560.5 bits (1443), Expect = 1.9e-156 Identity = 296/303 (97.69%), Postives = 300/303 (99.01%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. NCBI nr
Match: gi|590660004|ref|XP_007035282.1| (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 467.2 bits (1201), Expect = 2.1e-128 Identity = 241/303 (79.54%), Postives = 275/303 (90.76%), Query Frame = 1
BLAST of CSPI01G16220.3 vs. NCBI nr
Match: gi|590660007|ref|XP_007035283.1| (Phosphatidylinositolglycan synthase family protein isoform 2 [Theobroma cacao]) HSP 1 Score: 467.2 bits (1201), Expect = 2.1e-128 Identity = 241/303 (79.54%), Postives = 275/303 (90.76%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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