CSPI01G13930.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13930.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Histone H2B
Location	Chr1 : 9524807 .. 9525600 (-)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCATCTAAGAAATCCCATCTTCGATAAAACCTCCAAATTCCTTCGTTATATTTAGCAATGGCGCCAAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCAGAGAAGAAGCCACGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAGATTCATAGATTTTAGGGTTTTCTCGTGTAAAAAAGCAGGATCACTTGTTCTGGATCGTGGATTTCTTTTCCTTTTGTTGCATATTTTGGAATTGAATGAATGAAAATCGGTTTACATAACCCGAATTCTTTTGCTAATTGCTTGATCCTGTACACATCCTTCTGATTGTTTGCTTGACGGTCTCTGGAGATTTACCATAATTTCACCTAAACAAGTTTGTATGCCTGAGATTGAATCTGACTTCAATTAGTATTTTAGGTTTGTTGCTTTTCAATGGTCCAGGAAGAAGACATTGATTCAGTGCC

mRNA sequence

ATGGCGCCAAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCAGAGAAGAAGCCACGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCAGAGAAGAAGCCACGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Homology

[Close]

BLAST of CSPI01G13930.1 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-58
Identity = 130/145 (89.66%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSIETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CSPI01G13930.1 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-58
Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK-AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSIETY 60
           MAPKAEKKPAEKKPA E+K  AEKAPAEKKP+A KKLPK+    A DKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CSPI01G13930.1 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK--AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSIET 60
           MAPK EKKPAEKKPA E+K   AEKAPAEKKP+A KKLPK+    A +KKKKR+KKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CSPI01G13930.1 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSI 60
           MAPKAEKKPAEKKPA+E+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CSPI01G13930.1 vs. Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLP-KDASDKKKKRAKKSIET 60
           MAP+AEKKPAEKK AAE      K AEKAPAEKKP+A KKLP K+A DKKKKR+KK++ET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CSPI01G13930.1 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-64
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13930.1 vs. TrEMBL
Match: A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.9e-64
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13930.1 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.2e-61
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13930.1 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+KAPAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13930.1 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DK+KKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13930.1 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 226.9 bits (577), Expect = 8.1e-60
Identity = 130/145 (89.66%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSIETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CSPI01G13930.1 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 223.8 bits (569), Expect = 6.8e-59
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSI 60
           MAPKAEKKPAEKKPA+E+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CSPI01G13930.1 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 223.8 bits (569), Expect = 6.8e-59
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLP-KDASDKKKKRAKKSIET 60
           MAP+AEKKPAEKK AAE      K AEKAPAEKKP+A KKLP K+A DKKKKR+KK++ET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CSPI01G13930.1 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-58
Identity = 131/150 (87.33%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSI 60
           MAP+AEKKPAEKKPAAE+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CSPI01G13930.1 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 9.9e-58
Identity = 131/151 (86.75%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MAPKA-----EKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS----DKKKKRAKKS 60
           MAPKA     EKKPAEK PA EEK AEKAPAEKKP+A KKLPK+A     +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CSPI01G13930.1 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13930.1 vs. NCBI nr
Match: gi|449443375|ref|XP_004139453.1| (PREDICTED: histone H2B.7-like [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CSPI01G13930.1 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13930.1 vs. NCBI nr
Match: gi|823172056|ref|XP_012485001.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+KAPAEKKPRAEKKLPK+A DKKKKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CSPI01G13930.1 vs. NCBI nr
Match: gi|823172032|ref|XP_012484995.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DK+KKR+KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

The following BLAST results are available for this feature:

BLAST of CSPI01G13930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B7_ARATH	1.4e-58	89.66	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]
H2B_GOSHI	4.2e-58	89.12	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B1_MEDTR	1.2e-57	87.84	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B11_ARATH	1.2e-57	87.33	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]
H2B1_ARATH	1.2e-57	88.51	Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3	[more]

BLAST of CSPI01G13930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV55_CUCSA	2.7e-64	100.00	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0A0LST8_CUCSA	7.9e-64	99.30	Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1	[more]
A0A0D2SV51_GOSRA	8.2e-61	96.48	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	1.8e-60	95.77	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	1.8e-60	95.77	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]

BLAST of CSPI01G13930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	8.1e-60	89.66	Histone superfamily protein	[more]
AT5G59910.1	6.8e-59	87.33	Histone superfamily protein	[more]
AT1G07790.1	6.8e-59	88.51	Histone superfamily protein	[more]
AT3G45980.1	1.2e-58	87.33	Histone superfamily protein	[more]
AT2G28720.1	9.9e-58	86.75	Histone superfamily protein	[more]

BLAST of CSPI01G13930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659255\|ref\|XP_011654070.1\|	3.9e-64	100.00	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|449443375\|ref\|XP_004139453.1\|	1.1e-63	99.30	PREDICTED: histone H2B.7-like [Cucumis sativus]	[more]
gi\|823172029\|ref\|XP_012484994.1\|	1.2e-60	96.48	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172056\|ref\|XP_012485001.1\|	2.6e-60	95.77	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172032\|ref\|XP_012484995.1\|	2.6e-60	95.77	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G13930	CSPI01G13930	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G13930.1	CSPI01G13930.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G13930.1.utr3p1	CSPI01G13930.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G13930.1.cds1	CSPI01G13930.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G13930.1.utr5p1	CSPI01G13930.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 126..139 score: 5.3E-49coord: 74..94 score: 5.3E-49coord: 96..113 score: 5.3E-49coord: 113..126 score: 5.3E-49coord: 55..73 score: 5.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 13..142 score: 1.2E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..141 score: 1.1
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 110..132 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..118 score: 9.8
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 22..142 score: 1.9
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 27..142 score: 1.29