CSPI01G10470.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G10470.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionp55
LocationChr1 : 6586089 .. 6586835 (-)
Sequence length411
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAATATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGCGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAGAAATTTCATATTATAATAAATGCAATCTTTGATTGCATCCACATCTCATGCATCTCTTTAGGGTTTAAGTACTTTTTGTTTTGTTGAAATAGAATTATTGTTATTATTTCATATAATTGAAGTGATTTTGGTAGTGTCCCTAGCTCTCAAGGGTTAGCTCCGAGTTCGACATTCTCCATCTGAAATTTGAGGGTTCTTGCAGGGGATTTTTCTCAGCAATGAAACTATTTCTCATGAAATAAGACGAATTAATTTCACTAGTTTGCCAAGAAGAATCACTTGAATCCCCGGCAAAGGTCTCATAACACAGAACCAAAAGAAAATGAAGC

mRNA sequence

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGCGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Coding sequence (CDS)

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTATTTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGCGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG
Homology
[Close]
BLAST of CSPI01G10470.1 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1 

Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSAWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKS WCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]
BLAST of CSPI01G10470.1 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 48/98 (48.98%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSAWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K    +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]
BLAST of CSPI01G10470.1 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSAWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]
BLAST of CSPI01G10470.1 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1 

Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSAWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKS WCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]
BLAST of CSPI01G10470.1 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 48/98 (48.98%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSAWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K    +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]
BLAST of CSPI01G10470.1 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSAWCRKDNLVS 79
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +
Sbjct: 4   NKNFSNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAT 63

Query: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

The following BLAST results are available for this feature:
BLAST of CSPI01G10470.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10470.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRJ2_CUCSA1.4e-6599.26Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1[more]
A0A0A0LX14_CUCSA7.7e-0848.98p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1[more]
A0A0A0LU71_CUCSA2.5e-0640.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1[more]
BLAST of CSPI01G10470.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209404|gb|KGN64500.1|2.0e-6599.26hypothetical protein Csa_1G060770 [Cucumis sativus][more]
gi|700209400|gb|KGN64496.1|1.1e-0748.98p55 [Cucumis sativus][more]
gi|700209403|gb|KGN64499.1|3.5e-0640.87hypothetical protein Csa_1G060760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G10470CSPI01G10470gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G10470.1CSPI01G10470.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10470.1.utr3p1CSPI01G10470.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10470.1.cds1CSPI01G10470.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10470.1.utr5p1CSPI01G10470.1.utr5p1five_prime_UTR