CSPI01G09590.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G09590.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6002697 .. 6003077 (-)
Sequence length288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGCTCATATTTCAGCTCCATCTACAAATCCTGATGCGATAGTTGTTGACATTGACTGCACTATAAGCTTTAAATTTAAGAAACGCCTTGGAATAGCCACCAAGATATTATTTATGAATGGCCAACATTGGGGTATAGTTCTTCAACGGAGTACTAGACGAAAATGCCGTATATCTTGAAAACTTTTCAAGCGAGTCTGATGTTTTTCTAATATTCCAATAACTTTGCAGATGTTTGAGAGATTCCTTTTGCTTGTGAATATGGGAAAAACTCGACGGAATGAGAGCAGTTGTGCTTTGTTGAGCATGATCATGCCTTATCAAGAGCTTTTCTTGCCAATGATTCTGAATGATGAAGGAGATGATAGCCGAGGGTGA

mRNA sequence

ATGCGAGCTCATATTTCAGCTCCATCTACAAATCCTGATGCGATAGTTGTTGACATTGACTGCACTATAAGCTTTAAATTTAAGAAACGCCTTGGAATAGCCACCAAGATATTATTTATGAATGGCCAACATTGGGGTATAATGTTTGAGAGATTCCTTTTGCTTGTGAATATGGGAAAAACTCGACGGAATGAGAGCAGTTGTGCTTTGTTGAGCATGATCATGCCTTATCAAGAGCTTTTCTTGCCAATGATTCTGAATGATGAAGGAGATGATAGCCGAGGGTGA

Coding sequence (CDS)

ATGCGAGCTCATATTTCAGCTCCATCTACAAATCCTGATGCGATAGTTGTTGACATTGACTGCACTATAAGCTTTAAATTTAAGAAACGCCTTGGAATAGCCACCAAGATATTATTTATGAATGGCCAACATTGGGGTATAATGTTTGAGAGATTCCTTTTGCTTGTGAATATGGGAAAAACTCGACGGAATGAGAGCAGTTGTGCTTTGTTGAGCATGATCATGCCTTATCAAGAGCTTTTCTTGCCAATGATTCTGAATGATGAAGGAGATGATAGCCGAGGGTGA
Homology
[Close]
BLAST of CSPI01G09590.1 vs. TrEMBL
Match: A0A0A0LWP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050550 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.3e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MRAHISAPSTNPDAIVVDIDCTISFKFKKRLGIATKILFMNGQHWGIMFERFLLLVNMGK 60
          MRAHISAPSTNPDAIVVDIDCTISFKFKKRLGIATKILFMNGQHWGIMFERFLLLVNMGK
Sbjct: 1  MRAHISAPSTNPDAIVVDIDCTISFKFKKRLGIATKILFMNGQHWGIMFERFLLLVNMGK 60

Query: 61 TRRNESSCALLSMIMPYQELFLPMILNDEGDDSRG 96
          TRRNESSCALLSMIMPYQELFLPMILNDEGDDSRG
Sbjct: 61 TRRNESSCALLSMIMPYQELFLPMILNDEGDDSRG 95

[Close]
BLAST of CSPI01G09590.1 vs. NCBI nr
Match: gi|700209320|gb|KGN64416.1| (hypothetical protein Csa_1G050550 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 7.6e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MRAHISAPSTNPDAIVVDIDCTISFKFKKRLGIATKILFMNGQHWGIMFERFLLLVNMGK 60
          MRAHISAPSTNPDAIVVDIDCTISFKFKKRLGIATKILFMNGQHWGIMFERFLLLVNMGK
Sbjct: 1  MRAHISAPSTNPDAIVVDIDCTISFKFKKRLGIATKILFMNGQHWGIMFERFLLLVNMGK 60

Query: 61 TRRNESSCALLSMIMPYQELFLPMILNDEGDDSRG 96
          TRRNESSCALLSMIMPYQELFLPMILNDEGDDSRG
Sbjct: 61 TRRNESSCALLSMIMPYQELFLPMILNDEGDDSRG 95

The following BLAST results are available for this feature:
BLAST of CSPI01G09590.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWP7_CUCSA5.3e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050550 PE=4 SV=1[more]
BLAST of CSPI01G09590.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G09590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209320|gb|KGN64416.1|7.6e-48100.00hypothetical protein Csa_1G050550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G09590CSPI01G09590gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G09590.1CSPI01G09590.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G09590.1.cds2CSPI01G09590.1.cds2CDS
CSPI01G09590.1.cds1CSPI01G09590.1.cds1CDS