CSPI01G09400.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G09400.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 5894144 .. 5894419 (+)
Sequence length276
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGTTTCAAAGGTATAGTACCAGTCTATACTTCTTGCTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCAATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCATAAACTATTATTCCCCCGATGTCAAACTTACA

mRNA sequence

ATGAGTTTGTTTCAAAGGTATAGTACCAGTCTATACTTCTTGCTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCAATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCATAAACTATTATTCCCCCGATGTCAAACTTACA

Coding sequence (CDS)

ATGAGTTTGTTTCAAAGGTATAGTACCAGTCTATACTTCTTGCTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCAATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCATAAACTATTATTCCCCCGATGTCAAACTTACA
Homology
[Close]
BLAST of CSPI01G09400.1 vs. TrEMBL
Match: A0A0A0LWM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050350 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.1e-42
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 

Query: 1  MSLFQRYSTSLYFLLLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSN 60
          MSLFQRYSTS YFL LTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKS+
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLEKPIETSEPALHLTINYYSPDVKLT 93
          AINHGFLEKPIETSEPALHLT+ YYSPDVKLT
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 92

[Close]
BLAST of CSPI01G09400.1 vs. NCBI nr
Match: gi|700209300|gb|KGN64396.1| (hypothetical protein Csa_1G050350 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 

Query: 1  MSLFQRYSTSLYFLLLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSN 60
          MSLFQRYSTS YFL LTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKS+
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLEKPIETSEPALHLTINYYSPDVKLT 93
          AINHGFLEKPIETSEPALHLT+ YYSPDVKLT
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 92

The following BLAST results are available for this feature:
BLAST of CSPI01G09400.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09400.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWM1_CUCSA7.1e-4294.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050350 PE=4 SV=1[more]
BLAST of CSPI01G09400.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G09400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209300|gb|KGN64396.1|1.0e-4194.57hypothetical protein Csa_1G050350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G09400CSPI01G09400gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G09400.1CSPI01G09400.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G09400.mrna.cds.1CSPI01G09400.mrna.cds.1CDS