CSPI01G03440.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G03440.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 2154865 .. 2156061 (-)
Sequence length	1197

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAATGATTTGTGAGAGTAAAAAGATGATCATGGATTGGGGAAGACTTCCAACTTGTATTGGTACAACAATCTTCTCTAAACTTGTTATCTCCGATTTACCTATTTGTAGGTTAGTATGTAAAACTTGGAATCATACAGTTTTGGATTATGCTTCTGCTCCTCAATTTCAATGTCTTACTGGTGCTTTGCTTATCTGCACACATGATGAAGCTATTAGCATCGTCGATGACAGTTTTAAACTTAAATGCAATGCCAAAATGCAATGCATGAATTTTGATTCCAGAAAGCATTTGCATGCAAATTTGGATTTGGAATTGGAATTGATGAAATCTCCATCGTTATTGTTTGATGGCAATCGGAGTATCCATATAATAAATCAATGCAATGGGTTGTTGTACATTATCACCGTTGATTATGAGTGTCATGGCATGATTAATCATGAAATATTTAACCCTATGACTAATGAGTTCCTTCAAGTTCCTTGGACGGATGAATATAGATATGATGCGATTGGATTTGGTTGTAGCACTTCTACAAAACAATACAAATTGTTTAGAGTTAGAACCACTTTGCCTAATGAAGCATTTAGGAAAAGAATGGAAATTGATGTTTTGAGGTTTGGCAACGACAACAAATGGAGATCCCTACCTTTCTTTCAGCCTTCATCATCTCACAAATTTGTTTGCAGTGCGTATTTGAATGGAGTCATCTATTGGTTGGGAAAACTAAAACGTGAAAGAAACAAGGTTGTCATATATGCTCTTGATGTTGAAACAGAAAAATTTGAATCGAGTACTATTTTGGAAGTTGGCCGGATTAACCGAGAGATCTTGAACATTTATAATTTTAATAAGACCATTTATGCAACCTTCATAACTTTGGTCGATGCAACTTATAAGTACCCGATTCAAATTTGGAAGATGCAAGGAAAAAATTCATGGAGTATTCAAGAAGTACTTGACAATGACACACCAAATGATCATTCGAGAGACCTTGCAATCATCAAAGAAGCCTTTGAAGATAGAGAGCACATGGTCAATTTTCGAATTTTTTGCTTCTCTAATTCTATCTTTGGGAGGATGAGGAAGAAAATCGTATCATGGTATCAAGAGGAAAGAAGTATTTGGAAAATAGAATCCTTGAATTTTGGTTCTCTATCAAACATTTTGGCAGGAGATAGTCAAGATTGA

mRNA sequence

ATGGAGAAAATGATTTGTGAGAGTAAAAAGATGATCATGGATTGGGGAAGACTTCCAACTTGTATTGGTACAACAATCTTCTCTAAACTTGTTATCTCCGATTTACCTATTTGTAGGTTAGTATGTAAAACTTGGAATCATACAGTTTTGGATTATGCTTCTGCTCCTCAATTTCAATGTCTTACTGGTGCTTTGCTTATCTGCACACATGATGAAGCTATTAGCATCGTCGATGACAGTTTTAAACTTAAATGCAATGCCAAAATGCAATGCATGAATTTTGATTCCAGAAAGCATTTGCATGCAAATTTGGATTTGGAATTGGAATTGATGAAATCTCCATCGTTATTGTTTGATGGCAATCGGAGTATCCATATAATAAATCAATGCAATGGGTTGTTGTACATTATCACCGTTGATTATGAGTGTCATGGCATGATTAATCATGAAATATTTAACCCTATGACTAATGAGTTCCTTCAAGTTCCTTGGACGGATGAATATAGATATGATGCGATTGGATTTGGTTGTAGCACTTCTACAAAACAATACAAATTGTTTAGAGTTAGAACCACTTTGCCTAATGAAGCATTTAGGAAAAGAATGGAAATTGATGTTTTGAGGTTTGGCAACGACAACAAATGGAGATCCCTACCTTTCTTTCAGCCTTCATCATCTCACAAATTTGTTTGCAGTGCGTATTTGAATGGAGTCATCTATTGGTTGGGAAAACTAAAACGTGAAAGAAACAAGGTTGTCATATATGCTCTTGATGTTGAAACAGAAAAATTTGAATCGAGTACTATTTTGGAAGTTGGCCGGATTAACCGAGAGATCTTGAACATTTATAATTTTAATAAGACCATTTATGCAACCTTCATAACTTTGGTCGATGCAACTTATAAGTACCCGATTCAAATTTGGAAGATGCAAGGAAAAAATTCATGGAGTATTCAAGAAGTACTTGACAATGACACACCAAATGATCATTCGAGAGACCTTGCAATCATCAAAGAAGCCTTTGAAGATAGAGAGCACATGGTCAATTTTCGAATTTTTTGCTTCTCTAATTCTATCTTTGGGAGGATGAGGAAGAAAATCGTATCATGGTATCAAGAGGAAAGAAGTATTTGGAAAATAGAATCCTTGAATTTTGGTTCTCTATCAAACATTTTGGCAGGAGATAGTCAAGATTGA

Coding sequence (CDS)

ATGGAGAAAATGATTTGTGAGAGTAAAAAGATGATCATGGATTGGGGAAGACTTCCAACTTGTATTGGTACAACAATCTTCTCTAAACTTGTTATCTCCGATTTACCTATTTGTAGGTTAGTATGTAAAACTTGGAATCATACAGTTTTGGATTATGCTTCTGCTCCTCAATTTCAATGTCTTACTGGTGCTTTGCTTATCTGCACACATGATGAAGCTATTAGCATCGTCGATGACAGTTTTAAACTTAAATGCAATGCCAAAATGCAATGCATGAATTTTGATTCCAGAAAGCATTTGCATGCAAATTTGGATTTGGAATTGGAATTGATGAAATCTCCATCGTTATTGTTTGATGGCAATCGGAGTATCCATATAATAAATCAATGCAATGGGTTGTTGTACATTATCACCGTTGATTATGAGTGTCATGGCATGATTAATCATGAAATATTTAACCCTATGACTAATGAGTTCCTTCAAGTTCCTTGGACGGATGAATATAGATATGATGCGATTGGATTTGGTTGTAGCACTTCTACAAAACAATACAAATTGTTTAGAGTTAGAACCACTTTGCCTAATGAAGCATTTAGGAAAAGAATGGAAATTGATGTTTTGAGGTTTGGCAACGACAACAAATGGAGATCCCTACCTTTCTTTCAGCCTTCATCATCTCACAAATTTGTTTGCAGTGCGTATTTGAATGGAGTCATCTATTGGTTGGGAAAACTAAAACGTGAAAGAAACAAGGTTGTCATATATGCTCTTGATGTTGAAACAGAAAAATTTGAATCGAGTACTATTTTGGAAGTTGGCCGGATTAACCGAGAGATCTTGAACATTTATAATTTTAATAAGACCATTTATGCAACCTTCATAACTTTGGTCGATGCAACTTATAAGTACCCGATTCAAATTTGGAAGATGCAAGGAAAAAATTCATGGAGTATTCAAGAAGTACTTGACAATGACACACCAAATGATCATTCGAGAGACCTTGCAATCATCAAAGAAGCCTTTGAAGATAGAGAGCACATGGTCAATTTTCGAATTTTTTGCTTCTCTAATTCTATCTTTGGGAGGATGAGGAAGAAAATCGTATCATGGTATCAAGAGGAAAGAAGTATTTGGAAAATAGAATCCTTGAATTTTGGTTCTCTATCAAACATTTTGGCAGGAGATAGTCAAGATTGA

Homology

[Close]

BLAST of CSPI01G03440.1 vs. TrEMBL
Match: A0A0A0LPH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015770 PE=4 SV=1)

HSP 1 Score: 824.3 bits (2128), Expect = 6.3e-236
Identity = 395/398 (99.25%), Postives = 398/398 (100.00%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC 60
           MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC
Sbjct: 4   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC 63

Query: 61  LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG 120
           LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG
Sbjct: 64  LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG 123

Query: 121 NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS 180
           NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS
Sbjct: 124 NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS 183

Query: 181 TKQYKLFRVRTTLPNEAFRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVIY 240
           TKQYKLFRVRTTLPNEAFRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVIY
Sbjct: 184 TKQYKLFRVRTTLPNEAFRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVIY 243

Query: 241 WLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREILNIYNFNKTIYATFITLVDAT 300
           WLGKLKR+RNKVVIYALDVETEKFESSTILEVGRIN+EILNIYNFNKTIYATFITLVDAT
Sbjct: 244 WLGKLKRDRNKVVIYALDVETEKFESSTILEVGRINQEILNIYNFNKTIYATFITLVDAT 303

Query: 301 YKYPIQIWKMQGKNSWSIQEVLDNDTPNDHSRDLAIIKEAFEDREHMVNFRIFCFSNSIF 360
           YKYPIQIWKMQGKNSWSIQEVL+NDTPNDHSRDLAIIKEAFEDREHMVNFRIFCFSNSIF
Sbjct: 304 YKYPIQIWKMQGKNSWSIQEVLNNDTPNDHSRDLAIIKEAFEDREHMVNFRIFCFSNSIF 363

Query: 361 GRMRKKIVSWYQEERSIWKIESLNFGSLSNILAGDSQD 399
           GRMRKKIVSWYQEERSIWKIESLNFGSLSNILAGDSQD
Sbjct: 364 GRMRKKIVSWYQEERSIWKIESLNFGSLSNILAGDSQD 401

[Close]

BLAST of CSPI01G03440.1 vs. TrEMBL
Match: A0A0A0LRY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015760 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 7.6e-165
Identity = 297/404 (73.51%), Postives = 334/404 (82.67%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC 60
           MEKMICESKKMIMDWGRLPTCIGTTIFSKLVIS+LPICRLVC+TWNH VLDYASA QFQC
Sbjct: 4   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISNLPICRLVCRTWNHIVLDYASATQFQC 63

Query: 61  LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG 120
           LT ALLICT+DEAIS +DDS K+ CNA MQCM+FDSRKHLHAN DL+ ELMKSPSLLFDG
Sbjct: 64  LTTALLICTNDEAISFLDDSSKVNCNATMQCMDFDSRKHLHANFDLDSELMKSPSLLFDG 123

Query: 121 NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS 180
           N SIHII+QCNGLLY+IT +YE HG+ NH IFNPMTNEF+Q+PW DEY YD IGFGC  S
Sbjct: 124 NWSIHIISQCNGLLYVITNNYEYHGLYNHGIFNPMTNEFIQIPWHDEYGYDVIGFGCGIS 183

Query: 181 TKQYKLFRVRTTLPNEA-FRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVI 240
           TKQYKLFRVRTT P     RK ME+DVLRFGNDNKWR LPF  PS SH FVCSAYLNGVI
Sbjct: 184 TKQYKLFRVRTTFPRGGEGRKGMEMDVLRFGNDNKWRYLPFL-PSPSHVFVCSAYLNGVI 243

Query: 241 YWLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREILNIYNFNKTIYATFITLVDA 300
           YWLGK++ + N+VVI+A DVETEKFESSTIL+VG +++E LN+Y F +TIYATFI   + 
Sbjct: 244 YWLGKVEAKENEVVIHAFDVETEKFESSTILDVGLVDQESLNLYKFKETIYATFI---EM 303

Query: 301 TYKYPIQIWKMQGKNSWSIQEVLDNDTPNDHSRDLAIIKEAFEDREH---MVNFRIFCFS 360
           TY   IQ+WKMQ K SW  + ++ +D PN H RDL II EA EDRE    MVNFR FCF 
Sbjct: 304 TYD-SIQVWKMQEKGSWIPEVLVMDDIPN-HWRDLTII-EALEDRETILCMVNFRFFCFY 363

Query: 361 NSIFGRMRKKIVSWYQEE---RSIWKIESLNFGSLSNILAGDSQ 398
           NSIFGR RKK++  Y+E+   RSIWKIESLNFGSLSNIL+G+ Q
Sbjct: 364 NSIFGRRRKKVIPRYREKTRFRSIWKIESLNFGSLSNILSGECQ 400

[Close]

BLAST of CSPI01G03440.1 vs. TrEMBL
Match: A0A0A0LPC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 181/431 (42.00%), Postives = 244/431 (56.61%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGR-LPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQ 60
           ME M    ++M +DWG+ LP  I  TIFSKLVIS+LP CR VCKTWNH VL YAS+ Q Q
Sbjct: 24  MENMEMGERRMSIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQ 83

Query: 61  CLTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLH-ANLDLELELMKSPSLLF 120
            LT A L+ T D  +     +++L CN KM C+N D+R+  +  + DLE E +KS SL F
Sbjct: 84  FLTNAFLLSTSDRML-----NYEL-CNPKMHCINLDNRQSSNDVDFDLEWEFIKSGSLQF 143

Query: 121 DGNRSIHII--NQCNGLLYIITV-DYE-CHGMINHEIFNPMTNEFLQV----PWTDEYRY 180
            G+ +  I+  + CNGL++I    DY  C G     IFNPMTNEF QV     + D Y Y
Sbjct: 144 YGDWTFMILLAHPCNGLMFISKCSDYTWCQG-----IFNPMTNEFFQVSEQDTFDDFYHY 203

Query: 181 DAIGFGCSTSTKQYKLFRVRTTLP-NEAFR---------KRMEIDVLRFGND-------- 240
              GFG S  +KQYKLFRV   +P +E FR             ++VL FG          
Sbjct: 204 ---GFGLSAISKQYKLFRVSEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIH 263

Query: 241 NKWRSLPFFQPSSSHKFVCSAYLNGVIYWLGKL--KRERNKVVIYALDVETEKFESSTIL 300
           N+WR L     + S   +   YLNG+IYWLGK   K+E+ + VIYALDVETE+ E S IL
Sbjct: 264 NQWRHL----HNLSCDLIHGVYLNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVIL 323

Query: 301 EVGRINREILNIYNFNKTIYATFITLVDATYKYPIQIWKMQGKNSWSIQEVLDNDTPNDH 360
           +V   + +   ++ FN TIYA F    +   +  IQ+W MQ K SW  Q V+      D 
Sbjct: 324 QVQASDGK---MHPFNGTIYALFYINWEKDSR-TIQVWSMQEKCSWIRQFVI-----RDI 383

Query: 361 SRDLAIIK--EAFEDRE--HMVNFRIFCFSNSIFGRMRKKIVSWYQEE-RSIWKIESLNF 397
           S++   ++  + FED E   +++   FCF + +    +K+I+S  Q++ R + +IE LNF
Sbjct: 384 SKEWGCLELIKIFEDGEILFLIDSDFFCFYHPL--TEKKRIISKNQKKNRFVCQIECLNF 425

[Close]

BLAST of CSPI01G03440.1 vs. TrEMBL
Match: A0A0A0LWG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.6e-60
Identity = 186/429 (43.36%), Postives = 235/429 (54.78%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGR-LPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQ 60
           +E M    ++M ++ G+ LP  I  TIFSKLVISDLP CRLV  TWN  VLDYAS+ Q Q
Sbjct: 8   IENMEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQ 67

Query: 61  CLTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLH-ANLDLELELMKSPSLLF 120
            L  A L+ T D  +     ++KL CN KM C+N D+R+  +  + DLE E +KS SL F
Sbjct: 68  FLKNAFLLSTSDRGL-----NYKL-CNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQF 127

Query: 121 DGNRSIHII--NQCNGLLYIITV-DYE-CHGMINHEIFNPMTNEFLQV----PWTDEYRY 180
           DG+ +  II    CNGL+ I    DY  C G     IFNPMTNEFLQV     + D Y Y
Sbjct: 128 DGDWTYTIIMAGSCNGLMLISKCSDYTWCQG-----IFNPMTNEFLQVSEHGTFDDFYLY 187

Query: 181 DAIGFGCSTSTKQYKLFRV-----RTTLPNEAFRKRMEIDVLRFGND---------NKWR 240
              GFG S  TKQYKLFRV     R    +        ++VL FG           N+WR
Sbjct: 188 ---GFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTMEVLTFGRSGTNHSIPIHNQWR 247

Query: 241 ---SLPFFQPSSSHKFVCSAYLNGVIYWL--GKLKRERNKVVIYALDVETEKFESSTILE 300
              +LPF             YLNG+IYWL   K K +  K VIYALDVETE  E + +L+
Sbjct: 248 RLHTLPF------EIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQ 307

Query: 301 VGRINREILNIYNFNKTIYATFITLVDATYKYPIQIWKMQGKNSWSIQEVLDNDTPNDHS 360
           V   +     I+ FN TIYATF    +   +  IQ+W+MQ K+SW  + V+      D S
Sbjct: 308 VP--SNGYGKIHQFNGTIYATFHINWEKDSR-TIQVWRMQEKDSWVRKFVI-----CDIS 367

Query: 361 RD---LAIIKEAFEDRE--HMVNFRIFCFSNSIFGRMRKKIVSWYQ-EERSIWKIESLNF 395
           R+   L +IK  FED E   M+N   FCF N      +K+I+S  Q ++R I +IESLNF
Sbjct: 368 REWIHLQLIK-MFEDEEILFMINMDFFCFYNP--SSKKKRIISKNQKKKRYICQIESLNF 405

[Close]

BLAST of CSPI01G03440.1 vs. TrEMBL
Match: A0A0A0LSE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 167/408 (40.93%), Postives = 222/408 (54.41%), Query Frame = 1


Query: 12  IMDW-GRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQCLTGALLICTH 71
           I DW   LP+ IG TIFSKL++S+LP CR+VCK WN  +LD+AS+        A    T+
Sbjct: 3   ITDWVSGLPSDIGKTIFSKLLVSNLPACRVVCKAWNELILDHASS--------ASKFLTN 62

Query: 72  DEAISIVDDSFKLKC-----NAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDGNRSIH 131
           D  +   D      C     N  M C+ FD+   L  +LDLELE+ KS S  F+      
Sbjct: 63  DFILFTCDVLHPFPCPDNHTNPNMHCLRFDNLD-LDLDLDLELEVNKSSS--FEAGVVYK 122

Query: 132 IINQCNGLL--YIITVDYECHGMINHEIFNPMTNEFLQVPWTD--EYRYDAIGFGCSTST 191
           +IN CNGLL  Y + + +    ++   IFNPMTNEF QVP  +  EY Y   GFG   +T
Sbjct: 123 LINSCNGLLLIYKLPLCFPGEFLLRVGIFNPMTNEFFQVPHDEIVEYHY---GFGFIPAT 182

Query: 192 KQYKLFRVRTTL---PNEAFRKRMEIDVLRFGND-------NKWRSLPFFQPSSSHKFVC 251
           KQYKLFRV   L   P E       +DVL FG         ++WR L +  P        
Sbjct: 183 KQYKLFRVNFPLNVRPEEP-NSVSHLDVLTFGRSEIIDPKQSQWRRL-YSLPGGVENH-- 242

Query: 252 SAYLNGVIYWLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREILNIYNFNKTIYA 311
            A++NGVIYWLG+ K E+N+ V+Y LDVETEK + S +LEV  +N   ++I  FN T+YA
Sbjct: 243 GAHVNGVIYWLGEGK-EQNEYVVYTLDVETEKIQLSAVLEV--VNPMWMSIQQFNGTVYA 302

Query: 312 TFITLVDATYKYPIQIWKMQGKNSWSIQEVLDNDTPNDHSRDLAIIKEAFEDREH--MVN 371
            F  + +AT     Q+W+MQ KNSW    V+D+        +L ++K A+E+ E   MV 
Sbjct: 303 VF-HMEEAT-----QVWRMQEKNSWIRDFVIDD-------CNLTLVK-AYENGEMLCMVK 362

Query: 372 FRIFCFSNSIFGRMRKKIVSWYQEERSIWKI--ESLNFGSLSNILAGD 396
             +F   N   G   KK++S   E++    I    LNFGSL NILAGD
Sbjct: 363 PTVFWLYNPSTG--SKKVLSLRNEKKIFLGICHLELNFGSLLNILAGD 373

[Close]

BLAST of CSPI01G03440.1 vs. TAIR10
Match: AT2G02660.1 (AT2G02660.1 F-box associated ubiquitination effector family protein)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-07
Identity = 66/231 (28.57%), Postives = 96/231 (41.56%), Query Frame = 1


Query: 107 ELELMKSPSLLFDGNRSIH----IINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQV 166
           E  +  SP  L   N S       I   +GL+YI    Y    +I     NP T  ++ +
Sbjct: 81  EFHVKFSPDKLIPINHSYDPRYFSIGYASGLIYIYGDRYVARPLI----CNPNTGRYVIL 140

Query: 167 PWTDEYRYDAIGFGCSTSTKQYKLFRVRTTLPNEAFRKRMEIDVLRFGN-DNKWRSL--P 226
           P    YR     FG     KQYK   +    P++  R +    +L  G+ D  WR +  P
Sbjct: 141 PNRYTYRKAYSFFGFDPIGKQYKALSI--AYPSDPGRHK----ILTLGDGDLTWRKIKCP 200

Query: 227 FFQPSSSHKFVCSAYLNGVIYWLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREI 286
             +P      +C   +NGV+Y+L +     +  VI   DV +EKF   T ++V RI R  
Sbjct: 201 VPRPGIKGDGIC---INGVLYFLAERNELESDYVIVCFDVRSEKF---TYIDVERICR-- 260

Query: 287 LNIYNFNKTIYATFITLVDATYKYPIQIWKMQGKN-SWSIQEVLDNDTPND 330
             + N+   +    I   D    Y I    M GKN    ++E LD D  N+
Sbjct: 261 --LINYKGKL--AMIYWEDDVDIYEIN--HMAGKNLDKYLEENLDVDATNE 287

[Close]

BLAST of CSPI01G03440.1 vs. TAIR10
Match: AT1G47340.1 (AT1G47340.1 F-box and associated interaction domains-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.4e-06
Identity = 36/117 (30.77%), Postives = 51/117 (43.59%), Query Frame = 1


Query: 151 IFNPMTNEFLQVPWTDEYRYDAIGFGCSTSTKQYK-LFRVRTTLPNEAFRKRMEIDVLRF 210
           I NP+T  +  +P+ + YR     FG     KQYK LF    + P+          VL F
Sbjct: 170 ICNPLTGRYASLPFLERYRKAFSFFGFDPIEKQYKVLFMAYPSGPDHH-------TVLTF 229

Query: 211 GN-DNKWRSLPFFQPSSSHKFVCSAY-LNGVIYWLGKLKRERNKVVIYALDVETEKF 265
           G  +  WR +   + S  H  V     +NGV+Y+LG         V+   DV +E F
Sbjct: 230 GTGEMSWRKI---ECSVKHDIVSDGICINGVMYYLGDTSEFMTAFVVVCFDVRSETF 276

[Close]

BLAST of CSPI01G03440.1 vs. NCBI nr
Match: gi|700208689|gb|KGN63785.1| (hypothetical protein Csa_1G015770 [Cucumis sativus])

HSP 1 Score: 824.3 bits (2128), Expect = 9.0e-236
Identity = 395/398 (99.25%), Postives = 398/398 (100.00%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC 60
           MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC
Sbjct: 4   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC 63

Query: 61  LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG 120
           LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG
Sbjct: 64  LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG 123

Query: 121 NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS 180
           NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS
Sbjct: 124 NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS 183

Query: 181 TKQYKLFRVRTTLPNEAFRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVIY 240
           TKQYKLFRVRTTLPNEAFRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVIY
Sbjct: 184 TKQYKLFRVRTTLPNEAFRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVIY 243

Query: 241 WLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREILNIYNFNKTIYATFITLVDAT 300
           WLGKLKR+RNKVVIYALDVETEKFESSTILEVGRIN+EILNIYNFNKTIYATFITLVDAT
Sbjct: 244 WLGKLKRDRNKVVIYALDVETEKFESSTILEVGRINQEILNIYNFNKTIYATFITLVDAT 303

Query: 301 YKYPIQIWKMQGKNSWSIQEVLDNDTPNDHSRDLAIIKEAFEDREHMVNFRIFCFSNSIF 360
           YKYPIQIWKMQGKNSWSIQEVL+NDTPNDHSRDLAIIKEAFEDREHMVNFRIFCFSNSIF
Sbjct: 304 YKYPIQIWKMQGKNSWSIQEVLNNDTPNDHSRDLAIIKEAFEDREHMVNFRIFCFSNSIF 363

Query: 361 GRMRKKIVSWYQEERSIWKIESLNFGSLSNILAGDSQD 399
           GRMRKKIVSWYQEERSIWKIESLNFGSLSNILAGDSQD
Sbjct: 364 GRMRKKIVSWYQEERSIWKIESLNFGSLSNILAGDSQD 401

[Close]

BLAST of CSPI01G03440.1 vs. NCBI nr
Match: gi|449441129|ref|XP_004138336.1| (PREDICTED: uncharacterized protein LOC101222225 [Cucumis sativus])

HSP 1 Score: 588.2 bits (1515), Expect = 1.1e-164
Identity = 297/404 (73.51%), Postives = 334/404 (82.67%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQC 60
           MEKMICESKKMIMDWGRLPTCIGTTIFSKLVIS+LPICRLVC+TWNH VLDYASA QFQC
Sbjct: 4   MEKMICESKKMIMDWGRLPTCIGTTIFSKLVISNLPICRLVCRTWNHIVLDYASATQFQC 63

Query: 61  LTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDG 120
           LT ALLICT+DEAIS +DDS K+ CNA MQCM+FDSRKHLHAN DL+ ELMKSPSLLFDG
Sbjct: 64  LTTALLICTNDEAISFLDDSSKVNCNATMQCMDFDSRKHLHANFDLDSELMKSPSLLFDG 123

Query: 121 NRSIHIINQCNGLLYIITVDYECHGMINHEIFNPMTNEFLQVPWTDEYRYDAIGFGCSTS 180
           N SIHII+QCNGLLY+IT +YE HG+ NH IFNPMTNEF+Q+PW DEY YD IGFGC  S
Sbjct: 124 NWSIHIISQCNGLLYVITNNYEYHGLYNHGIFNPMTNEFIQIPWHDEYGYDVIGFGCGIS 183

Query: 181 TKQYKLFRVRTTLPNEA-FRKRMEIDVLRFGNDNKWRSLPFFQPSSSHKFVCSAYLNGVI 240
           TKQYKLFRVRTT P     RK ME+DVLRFGNDNKWR LPF  PS SH FVCSAYLNGVI
Sbjct: 184 TKQYKLFRVRTTFPRGGEGRKGMEMDVLRFGNDNKWRYLPFL-PSPSHVFVCSAYLNGVI 243

Query: 241 YWLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREILNIYNFNKTIYATFITLVDA 300
           YWLGK++ + N+VVI+A DVETEKFESSTIL+VG +++E LN+Y F +TIYATFI   + 
Sbjct: 244 YWLGKVEAKENEVVIHAFDVETEKFESSTILDVGLVDQESLNLYKFKETIYATFI---EM 303

Query: 301 TYKYPIQIWKMQGKNSWSIQEVLDNDTPNDHSRDLAIIKEAFEDREH---MVNFRIFCFS 360
           TY   IQ+WKMQ K SW  + ++ +D PN H RDL II EA EDRE    MVNFR FCF 
Sbjct: 304 TYD-SIQVWKMQEKGSWIPEVLVMDDIPN-HWRDLTII-EALEDRETILCMVNFRFFCFY 363

Query: 361 NSIFGRMRKKIVSWYQEE---RSIWKIESLNFGSLSNILAGDSQ 398
           NSIFGR RKK++  Y+E+   RSIWKIESLNFGSLSNIL+G+ Q
Sbjct: 364 NSIFGRRRKKVIPRYREKTRFRSIWKIESLNFGSLSNILSGECQ 400

[Close]

BLAST of CSPI01G03440.1 vs. NCBI nr
Match: gi|700208649|gb|KGN63745.1| (hypothetical protein Csa_1G014420 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 3.2e-63
Identity = 181/431 (42.00%), Postives = 244/431 (56.61%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGR-LPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQ 60
           ME M    ++M +DWG+ LP  I  TIFSKLVIS+LP CR VCKTWNH VL YAS+ Q Q
Sbjct: 24  MENMEMGERRMSIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQ 83

Query: 61  CLTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLH-ANLDLELELMKSPSLLF 120
            LT A L+ T D  +     +++L CN KM C+N D+R+  +  + DLE E +KS SL F
Sbjct: 84  FLTNAFLLSTSDRML-----NYEL-CNPKMHCINLDNRQSSNDVDFDLEWEFIKSGSLQF 143

Query: 121 DGNRSIHII--NQCNGLLYIITV-DYE-CHGMINHEIFNPMTNEFLQV----PWTDEYRY 180
            G+ +  I+  + CNGL++I    DY  C G     IFNPMTNEF QV     + D Y Y
Sbjct: 144 YGDWTFMILLAHPCNGLMFISKCSDYTWCQG-----IFNPMTNEFFQVSEQDTFDDFYHY 203

Query: 181 DAIGFGCSTSTKQYKLFRVRTTLP-NEAFR---------KRMEIDVLRFGND-------- 240
              GFG S  +KQYKLFRV   +P +E FR             ++VL FG          
Sbjct: 204 ---GFGLSAISKQYKLFRVSEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIH 263

Query: 241 NKWRSLPFFQPSSSHKFVCSAYLNGVIYWLGKL--KRERNKVVIYALDVETEKFESSTIL 300
           N+WR L     + S   +   YLNG+IYWLGK   K+E+ + VIYALDVETE+ E S IL
Sbjct: 264 NQWRHL----HNLSCDLIHGVYLNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVIL 323

Query: 301 EVGRINREILNIYNFNKTIYATFITLVDATYKYPIQIWKMQGKNSWSIQEVLDNDTPNDH 360
           +V   + +   ++ FN TIYA F    +   +  IQ+W MQ K SW  Q V+      D 
Sbjct: 324 QVQASDGK---MHPFNGTIYALFYINWEKDSR-TIQVWSMQEKCSWIRQFVI-----RDI 383

Query: 361 SRDLAIIK--EAFEDRE--HMVNFRIFCFSNSIFGRMRKKIVSWYQEE-RSIWKIESLNF 397
           S++   ++  + FED E   +++   FCF + +    +K+I+S  Q++ R + +IE LNF
Sbjct: 384 SKEWGCLELIKIFEDGEILFLIDSDFFCFYHPL--TEKKRIISKNQKKNRFVCQIECLNF 425

[Close]

BLAST of CSPI01G03440.1 vs. NCBI nr
Match: gi|700210076|gb|KGN65172.1| (hypothetical protein Csa_1G257290 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 9.5e-60
Identity = 186/429 (43.36%), Postives = 235/429 (54.78%), Query Frame = 1


Query: 1   MEKMICESKKMIMDWGR-LPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQ 60
           +E M    ++M ++ G+ LP  I  TIFSKLVISDLP CRLV  TWN  VLDYAS+ Q Q
Sbjct: 8   IENMEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQ 67

Query: 61  CLTGALLICTHDEAISIVDDSFKLKCNAKMQCMNFDSRKHLH-ANLDLELELMKSPSLLF 120
            L  A L+ T D  +     ++KL CN KM C+N D+R+  +  + DLE E +KS SL F
Sbjct: 68  FLKNAFLLSTSDRGL-----NYKL-CNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQF 127

Query: 121 DGNRSIHII--NQCNGLLYIITV-DYE-CHGMINHEIFNPMTNEFLQV----PWTDEYRY 180
           DG+ +  II    CNGL+ I    DY  C G     IFNPMTNEFLQV     + D Y Y
Sbjct: 128 DGDWTYTIIMAGSCNGLMLISKCSDYTWCQG-----IFNPMTNEFLQVSEHGTFDDFYLY 187

Query: 181 DAIGFGCSTSTKQYKLFRV-----RTTLPNEAFRKRMEIDVLRFGND---------NKWR 240
              GFG S  TKQYKLFRV     R    +        ++VL FG           N+WR
Sbjct: 188 ---GFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTMEVLTFGRSGTNHSIPIHNQWR 247

Query: 241 ---SLPFFQPSSSHKFVCSAYLNGVIYWL--GKLKRERNKVVIYALDVETEKFESSTILE 300
              +LPF             YLNG+IYWL   K K +  K VIYALDVETE  E + +L+
Sbjct: 248 RLHTLPF------EIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQ 307

Query: 301 VGRINREILNIYNFNKTIYATFITLVDATYKYPIQIWKMQGKNSWSIQEVLDNDTPNDHS 360
           V   +     I+ FN TIYATF    +   +  IQ+W+MQ K+SW  + V+      D S
Sbjct: 308 VP--SNGYGKIHQFNGTIYATFHINWEKDSR-TIQVWRMQEKDSWVRKFVI-----CDIS 367

Query: 361 RD---LAIIKEAFEDRE--HMVNFRIFCFSNSIFGRMRKKIVSWYQ-EERSIWKIESLNF 395
           R+   L +IK  FED E   M+N   FCF N      +K+I+S  Q ++R I +IESLNF
Sbjct: 368 REWIHLQLIK-MFEDEEILFMINMDFFCFYNP--SSKKKRIISKNQKKKRYICQIESLNF 405

[Close]

BLAST of CSPI01G03440.1 vs. NCBI nr
Match: gi|778664711|ref|XP_011660339.1| (PREDICTED: putative F-box protein At1g32420 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 167/408 (40.93%), Postives = 222/408 (54.41%), Query Frame = 1


Query: 12  IMDW-GRLPTCIGTTIFSKLVISDLPICRLVCKTWNHTVLDYASAPQFQCLTGALLICTH 71
           I DW   LP+ IG TIFSKL++S+LP CR+VCK WN  +LD+AS+        A    T+
Sbjct: 3   ITDWVSGLPSDIGKTIFSKLLVSNLPACRVVCKAWNELILDHASS--------ASKFLTN 62

Query: 72  DEAISIVDDSFKLKC-----NAKMQCMNFDSRKHLHANLDLELELMKSPSLLFDGNRSIH 131
           D  +   D      C     N  M C+ FD+   L  +LDLELE+ KS S  F+      
Sbjct: 63  DFILFTCDVLHPFPCPDNHTNPNMHCLRFDNLD-LDLDLDLELEVNKSSS--FEAGVVYK 122

Query: 132 IINQCNGLL--YIITVDYECHGMINHEIFNPMTNEFLQVPWTD--EYRYDAIGFGCSTST 191
           +IN CNGLL  Y + + +    ++   IFNPMTNEF QVP  +  EY Y   GFG   +T
Sbjct: 123 LINSCNGLLLIYKLPLCFPGEFLLRVGIFNPMTNEFFQVPHDEIVEYHY---GFGFIPAT 182

Query: 192 KQYKLFRVRTTL---PNEAFRKRMEIDVLRFGND-------NKWRSLPFFQPSSSHKFVC 251
           KQYKLFRV   L   P E       +DVL FG         ++WR L +  P        
Sbjct: 183 KQYKLFRVNFPLNVRPEEP-NSVSHLDVLTFGRSEIIDPKQSQWRRL-YSLPGGVENH-- 242

Query: 252 SAYLNGVIYWLGKLKRERNKVVIYALDVETEKFESSTILEVGRINREILNIYNFNKTIYA 311
            A++NGVIYWLG+ K E+N+ V+Y LDVETEK + S +LEV  +N   ++I  FN T+YA
Sbjct: 243 GAHVNGVIYWLGEGK-EQNEYVVYTLDVETEKIQLSAVLEV--VNPMWMSIQQFNGTVYA 302

Query: 312 TFITLVDATYKYPIQIWKMQGKNSWSIQEVLDNDTPNDHSRDLAIIKEAFEDREH--MVN 371
            F  + +AT     Q+W+MQ KNSW    V+D+        +L ++K A+E+ E   MV 
Sbjct: 303 VF-HMEEAT-----QVWRMQEKNSWIRDFVIDD-------CNLTLVK-AYENGEMLCMVK 362

Query: 372 FRIFCFSNSIFGRMRKKIVSWYQEERSIWKI--ESLNFGSLSNILAGD 396
             +F   N   G   KK++S   E++    I    LNFGSL NILAGD
Sbjct: 363 PTVFWLYNPSTG--SKKVLSLRNEKKIFLGICHLELNFGSLLNILAGD 373

The following BLAST results are available for this feature:

BLAST of CSPI01G03440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G03440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPH0_CUCSA	6.3e-236	99.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015770 PE=4 SV=1	[more]
A0A0A0LRY6_CUCSA	7.6e-165	73.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015760 PE=4 SV=1	[more]
A0A0A0LPC6_CUCSA	2.2e-63	42.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1	[more]
A0A0A0LWG1_CUCSA	6.6e-60	43.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1	[more]
A0A0A0LSE0_CUCSA	1.6e-53	40.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1	[more]

BLAST of CSPI01G03440.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02660.1	5.8e-07	28.57	F-box associated ubiquitination effector family protein	[more]
AT1G47340.1	6.4e-06	30.77	F-box and associated interaction domains-containing protein	[more]

BLAST of CSPI01G03440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208689\|gb\|KGN63785.1\|	9.0e-236	99.25	hypothetical protein Csa_1G015770 [Cucumis sativus]	[more]
gi\|449441129\|ref\|XP_004138336.1\|	1.1e-164	73.51	PREDICTED: uncharacterized protein LOC101222225 [Cucumis sativus]	[more]
gi\|700208649\|gb\|KGN63745.1\|	3.2e-63	42.00	hypothetical protein Csa_1G014420 [Cucumis sativus]	[more]
gi\|700210076\|gb\|KGN65172.1\|	9.5e-60	43.36	hypothetical protein Csa_1G257290 [Cucumis sativus]	[more]
gi\|778664711\|ref\|XP_011660339.1\|	2.3e-53	40.93	PREDICTED: putative F-box protein At1g32420 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR013187	F-box-assoc_dom_typ3
IPR017451	F-box-assoc_interact_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G03440	CSPI01G03440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G03440.1	CSPI01G03440.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G03440.1.cds1	CSPI01G03440.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 13..49 score: 3.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 15..51 score: 1.
IPR013187	F-box associated domain, type 3	PFAM	PF08268	FBA_3	coord: 234..347 score: 5.
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	TIGR01640	coord: 128..324 score: 7.8
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 14..51 score: 1.
None	No IPR available	PANTHER	PTHR32133	FAMILY NOT NAMED	coord: 2..385 score: 4.6