BhiUN557M14 (mRNA) Wax gourd

Overview
NameBhiUN557M14
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionRibonuclease H2 subunit A
LocationContig557 : 355110 .. 357071 (+)
Sequence length352
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGCAATATCGAGTCCCAAAATGGGCTTCCAAGCCTTGTGTGATGGGCATCGATGAAGCTGGTCAAGGCCTTGTTTTAGGTTTTCTATGTTCCTATTCGTTTCGTTCCATTTCTGCCTCTTTAATTCCGCTTCGATCATCATATTTTGGGGTATGATTTTGAATACTCTTTTCTTTTTGAAATATTATTGCATATGATGATCTCAGGGCCAATGGTTTATAGATGCTTGTACTGCGCCAATTCATATTTGAAAGAACTTCCGTCTTTGATTTTAGTAGGTTTAGCTTCTTGCTTCTATGATTTTCTTTTAACTGTTGTTCATCATTTCCCTATTTCGTTTACTTTTCTTCCAACTCGTGATGTGTTGCCTGTAGACTCAAAAAATTTGAAACAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGAGGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCTAAAATGCTAAATAAGTCTTCAGTGGTTTATAAATTCTTTCATTTGCATAAATACTTTTATTTTCACTTTACCTATTGAATTCGATGGTATAGAGAATGGAACTTAGTTGAAATTTCGTATTTCTTGAGAAATGGTATTACATGAAATCTCGTCTTTCTTACTGGTACGGTTAGATGTTTTAGTGTTTATAATTCTTTCACTTTATAGAGCTTCTTCCATTGGGGCATCAGCTGGTCGAGGTATCATTGGGAGGTAGAACGGCCTAGTTTACGTGTGGGAATTATCTATAGGAATTAAACTGGGCACTCTTCTTCATTTTGAAGGTATGTGTTATAGCATTGGTGACTGAAGCTTTGCTCAGTGTGCACTATTCTTTGTGAAAAGAGTTAAATTTTTCAGTATACTGAAATTGTTTCCATAATTCTCACAACTCATCAAGAGAAGAAACAAAGAAACAAAGAGTCAATACTCATCATACTTCTGTTCTGGAGTTTAGATACGATAACAAATAAGACACAAGCTTTAAAAGTTAGAAACAGTGGAATATGAGACATGTTTATCATCATAATAGTGCCATTCCCTATTGTAGAGTATTGTATCTTTCAAAAGAAGATTCATTTCCAGTACCATTATTATTATTATCAATTTCTTCAGTTTCTCCGATGTATATTTTCTCCAATATAGGTACAAATGTTGTTTGTATTGCAATTGATAATAAAGAGATAGGTGTGGTGGCTGTAGCAGCTGAAAATAGGCTTCTGGTATATCTAGTTCCATCAGATTGGAAAAGGTAAACCATAAATGGCCTACCAACAAAGAAAATTACTTCTAAACTGCACAATATCATCAGCAAAATGTTTTAGTTTTGAGTTGGTGCCTGCCCCACTTTTATTGTACAATAGTTGGACTTCCAAACAGTTTGGGTTCGTTCCTGATGTCTACTTCTTGATACACTTAGGTTCATTTTGTTGTGTTTGGGTTTACTTACACTTTGACTAATCTTATGGGATAGATGTCTCTTTCTAAACATTTGGTTATCAAGAAACTCATAAGATTGTAGTATTCTAGGTAGATGGCCTTGGCATCCATAACAATGGAATCTATTTTTCAAAATCCTGTGTCACGAGGCCACACTATTTTTCATCAACTCCACTTCTCATAAATCATCAAATATCATAGTCTGATTTGAGGTGAAAATTAGATGCCAAAACTTCTGATGCTTCCCTGACAGTCTCACAAACTTAAATTTGACTTTGTTATCGAGTTCTTTTGATTATATTCACAGTGATATCATTTATATATATATATATATATATATATATTATTTATATGCTTGATTTACAGGGATTCGGACAAAGTGGATGAAGATGAGGAAACAGTTGGAAGTGGTAAAAAAACAATTAAAACTAAGCAATCTTGGTATCACCACATGGAAGAGAGAGTGAAGAAATTGAATCAAATGCCAAAGGACG

mRNA sequence

ATGTCTTCGCAATATCGAGTCCCAAAATGGGCTTCCAAGCCTTGTGTGATGGGCATCGATGAAGCTGGTCAAGGCCTTGTTTTAGGAATTAAACTGGGCACTCTTCTTCATTTTGAAGGTACAAATGTTGTTTGTATTGCAATTGATAATAAAGAGATAGGTGTGGTGGCTGTAGCAGCTGAAAATAGGCTTCTGGTATATCTAGTTCCATCAGATTGGAAAAGGGATTCGGACAAAGTGGATGAAGATGAGGAAACAGTTGGAAGTGGTAAAAAAACAATTAAAACTAAGCAATCTTGGTATCACCACATGGAAGAGAGAGTGAAGAAATTGAATCAAATGCCAAAGGACG

Coding sequence (CDS)

ATGTCTTCGCAATATCGAGTCCCAAAATGGGCTTCCAAGCCTTGTGTGATGGGCATCGATGAAGCTGGTCAAGGCCTTGTTTTAGGAATTAAACTGGGCACTCTTCTTCATTTTGAAGGTACAAATGTTGTTTGTATTGCAATTGATAATAAAGAGATAGGTGTGGTGGCTGTAGCAGCTGAAAATAGGCTTCTGGTATATCTAGTTCCATCAGATTGGAAAAGGGATTCGGACAAAGTGGATGAAGATGAGGAAACAGTTGGAAGTGGTAAAAAAACAATTAAAACTAAGCAATCTTGGTATCACCACATGGAAGAGAGAGTGAAGAAATTGAATCAAATGCCAAAGGACG

Protein sequence

MSSQYRVPKWASKPCVMGIDEAGQGLVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKRDSDKVDEDEETVGSGKKTIKTKQSWYHHMEERVKKLNQMPKD
Homology
[Close]
BLAST of BhiUN557M14 vs. TAIR10
Match: AT2G25100.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 1  MSSQYRVPKWASKPCVMGIDEAGQGLVLG 30
          M S+   P+WAS+PC+MGIDEAG+G VLG
Sbjct: 1  MESECLTPEWASQPCLMGIDEAGRGPVLG 29

[Close]
BLAST of BhiUN557M14 vs. Swiss-Prot
Match: sp|Q9SEZ6|RNH2A_ARATH (Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 1  MSSQYRVPKWASKPCVMGIDEAGQGLVLG 30
          M S+   P+WAS+PC+MGIDEAG+G VLG
Sbjct: 1  MESECLTPEWASQPCLMGIDEAGRGPVLG 29

[Close]
BLAST of BhiUN557M14 vs. TrEMBL
Match: tr|A0A0A0KR62|A0A0A0KR62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609640 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 39/50 (78.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KL TLL FEG NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 1163 LSTGNKLATLLRFEGANVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 1212

[Close]
BLAST of BhiUN557M14 vs. TrEMBL
Match: tr|A0A1S3BG39|A0A1S3BG39_CUCME (uncharacterized protein LOC103489281 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489281 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KL TLL F+G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 1121 LSTGNKLATLLRFKGANVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 1170

[Close]
BLAST of BhiUN557M14 vs. TrEMBL
Match: tr|A0A1S3BFF2|A0A1S3BFF2_CUCME (uncharacterized protein LOC103489281 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489281 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KL TLL F+G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 1159 LSTGNKLATLLRFKGANVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 1208

[Close]
BLAST of BhiUN557M14 vs. TrEMBL
Match: tr|A0A1S3BJF5|A0A1S3BJF5_CUCME (uncharacterized protein LOC103490556 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103490556 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-06
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 40  GTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
           G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 88  GENVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 123

[Close]
BLAST of BhiUN557M14 vs. TrEMBL
Match: tr|A0A1S3BJG1|A0A1S3BJG1_CUCME (uncharacterized protein LOC103490556 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490556 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-06
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 40  GTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
           G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 88  GENVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 123

[Close]
BLAST of BhiUN557M14 vs. NCBI nr
Match: XP_011655775.1 (PREDICTED: uncharacterized protein LOC101212926 [Cucumis sativus] >KGN52078.1 hypothetical protein Csa_5G609640 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 39/50 (78.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KL TLL FEG NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 1163 LSTGNKLATLLRFEGANVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 1212

[Close]
BLAST of BhiUN557M14 vs. NCBI nr
Match: XP_008446596.1 (PREDICTED: uncharacterized protein LOC103489281 isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 6.7e-10
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KL TLL F+G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 1159 LSTGNKLATLLRFKGANVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 1208

[Close]
BLAST of BhiUN557M14 vs. NCBI nr
Match: XP_008446597.1 (PREDICTED: uncharacterized protein LOC103489281 isoform X2 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 6.7e-10
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KL TLL F+G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 1121 LSTGNKLATLLRFKGANVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 1170

[Close]
BLAST of BhiUN557M14 vs. NCBI nr
Match: XP_022150652.1 (uncharacterized protein LOC111018735 isoform X1 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 26   LVLGIKLGTLLHFEGTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
            L  G KLGTLL F+G +V CIA D++E GVVAVAA+ RLLVYL+ SD KR
Sbjct: 1208 LSTGNKLGTLLRFKGASVFCIATDDRETGVVAVAADGRLLVYLLSSDGKR 1257

[Close]
BLAST of BhiUN557M14 vs. NCBI nr
Match: XP_008448325.1 (PREDICTED: uncharacterized protein LOC103490556 isoform X1 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 40  GTNVVCIAIDNKEIGVVAVAAENRLLVYLVPSDWKR 76
           G NVVCIA DNKE GVVAVAAENRLLVYL+ SD KR
Sbjct: 88  GENVVCIATDNKETGVVAVAAENRLLVYLLSSDTKR 123

The following BLAST results are available for this feature:
BLAST of BhiUN557M14 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25100.11.6e-0565.52Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of BhiUN557M14 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SEZ6|RNH2A_ARATH2.9e-0465.52Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2[more]
BLAST of BhiUN557M14 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KR62|A0A0A0KR62_CUCSA1.5e-1078.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609640 PE=4 SV=1[more]
tr|A0A1S3BG39|A0A1S3BG39_CUCME4.4e-1076.00uncharacterized protein LOC103489281 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BFF2|A0A1S3BFF2_CUCME4.4e-1076.00uncharacterized protein LOC103489281 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BJF5|A0A1S3BJF5_CUCME5.1e-0683.33uncharacterized protein LOC103490556 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BJG1|A0A1S3BJG1_CUCME5.1e-0683.33uncharacterized protein LOC103490556 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of BhiUN557M14 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011655775.12.3e-1078.00PREDICTED: uncharacterized protein LOC101212926 [Cucumis sativus] >KGN52078.1 hy... [more]
XP_008446596.16.7e-1076.00PREDICTED: uncharacterized protein LOC103489281 isoform X1 [Cucumis melo][more]
XP_008446597.16.7e-1076.00PREDICTED: uncharacterized protein LOC103489281 isoform X2 [Cucumis melo][more]
XP_022150652.11.8e-0766.00uncharacterized protein LOC111018735 isoform X1 [Momordica charantia][more]
XP_008448325.17.7e-0683.33PREDICTED: uncharacterized protein LOC103490556 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
BhiUN557G14BhiUN557G14gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
BhiUN557M14.exon1BhiUN557M14.exon1exon
BhiUN557M14.exon2BhiUN557M14.exon2exon
BhiUN557M14.exon3BhiUN557M14.exon3exon
BhiUN557M14.exon4BhiUN557M14.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.BhiUN557M14cds.BhiUN557M14CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
BhiUN557M14BhiUN557M14-proteinpolypeptide