Bhi11M002003 (mRNA) Wax gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCAAATAATCTCTCTAGACCATGGCAAGTTTATGGTGTCTTTTGATGTGCGTCATTATTGGGTTTGGAGTATCATTTGGATTCTCTGTGTTGATCCTATGGCTTGTTTTCATAACCCACAAGATCAAATTCAATGTAACCGATGCCACTCTCACCCAATTCAACTTCACCAACAATGACACACAACTCCATTACAATCTTGGTGTTTACTTCACCATTCGAAACCCTAATGAACAAGTTGGTATCTACTATGACACCATTGAAGCAACTACAAGCTACAAAGATCAAAACTTTCACACCAGATTGCTAACCCCTTTTTACCAAACCCCAAAGACGACAAGCCTACTTAAAGGACGGTTTGAAGGGCAGCAGCTTGTGGTAATCGCAAACAACAAAGTTTCTGAATTCAATACTGAAAAACTTGCTGGGGTTTATTCAATTGATGTGAAATTTCGTCTTTCATTGAGATTGAAATTTGGGCTTTATAAAATCATTAGAGTTAGGCCTAAAGTGGGATGTGGATTCCAACTTCCATTGAATTCTAGTGGAACCTCGTCATTTCCTTGGTTTCAGACTGCTATTGGTTGTCATGTTGATTATTGATATTTTCTATTTTTGAGTTCTATAATGATCAAATCCATTTTTTTTTTGTTTGATATCTTTTAATTTGTTAGTTGGAATCGAGATCATATGATCTTCGTAGAGTCCAATGTATGTTTATTGAAGTTTTATAAAATATCAAAATGTCAA ATCAAATAATCTCTCTAGACCATGGCAAGTTTATGGTGTCTTTTGATGTGCGTCATTATTGGGTTTGGAGTATCATTTGGATTCTCTGTGTTGATCCTATGGCTTGTTTTCATAACCCACAAGATCAAATTCAATGTAACCGATGCCACTCTCACCCAATTCAACTTCACCAACAATGACACACAACTCCATTACAATCTTGGTGTTTACTTCACCATTCGAAACCCTAATGAACAAGTTGGTATCTACTATGACACCATTGAAGCAACTACAAGCTACAAAGATCAAAACTTTCACACCAGATTGCTAACCCCTTTTTACCAAACCCCAAAGACGACAAGCCTACTTAAAGGACGGTTTGAAGGGCAGCAGCTTGTGGTAATCGCAAACAACAAAGTTTCTGAATTCAATACTGAAAAACTTGCTGGGGTTTATTCAATTGATGTGAAATTTCGTCTTTCATTGAGATTGAAATTTGGGCTTTATAAAATCATTAGAGTTAGGCCTAAAGTGGGATGTGGATTCCAACTTCCATTGAATTCTAGTGGAACCTCGTCATTTCCTTGGTTTCAGACTGCTATTGGTTGTCATGTTGATTATTGATATTTTCTATTTTTGAGTTCTATAATGATCAAATCCATTTTTTTTTTGTTTGATATCTTTTAATTTGTTAGTTGGAATCGAGATCATATGATCTTCGTAGAGTCCAATGTATGTTTATTGAAGTTTTATAAAATATCAAAATGTCAA ATGGCAAGTTTATGGTGTCTTTTGATGTGCGTCATTATTGGGTTTGGAGTATCATTTGGATTCTCTGTGTTGATCCTATGGCTTGTTTTCATAACCCACAAGATCAAATTCAATGTAACCGATGCCACTCTCACCCAATTCAACTTCACCAACAATGACACACAACTCCATTACAATCTTGGTGTTTACTTCACCATTCGAAACCCTAATGAACAAGTTGGTATCTACTATGACACCATTGAAGCAACTACAAGCTACAAAGATCAAAACTTTCACACCAGATTGCTAACCCCTTTTTACCAAACCCCAAAGACGACAAGCCTACTTAAAGGACGGTTTGAAGGGCAGCAGCTTGTGGTAATCGCAAACAACAAAGTTTCTGAATTCAATACTGAAAAACTTGCTGGGGTTTATTCAATTGATGTGAAATTTCGTCTTTCATTGAGATTGAAATTTGGGCTTTATAAAATCATTAGAGTTAGGCCTAAAGTGGGATGTGGATTCCAACTTCCATTGAATTCTAGTGGAACCTCGTCATTTCCTTGGTTTCAGACTGCTATTGGTTGTCATGTTGATTATTGA MASLWCLLMCVIIGFGVSFGFSVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLHYNLGVYFTIRNPNEQVGIYYDTIEATTSYKDQNFHTRLLTPFYQTPKTTSLLKGRFEGQQLVVIANNKVSEFNTEKLAGVYSIDVKFRLSLRLKFGLYKIIRVRPKVGCGFQLPLNSSGTSSFPWFQTAIGCHVDY
BLAST of Bhi11M002003 vs. Swiss-Prot
Match: sp|Q9SJ52|NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 4.4e-34 Identity = 81/191 (42.41%), Postives = 117/191 (61.26%), Query Frame = 0
BLAST of Bhi11M002003 vs. Swiss-Prot
Match: sp|Q9FNH6|NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 3.5e-31 Identity = 76/175 (43.43%), Postives = 108/175 (61.71%), Query Frame = 0
BLAST of Bhi11M002003 vs. Swiss-Prot
Match: sp|Q9SRN1|NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27 Identity = 65/167 (38.92%), Postives = 103/167 (61.68%), Query Frame = 0
BLAST of Bhi11M002003 vs. Swiss-Prot
Match: sp|Q9C615|SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 3.4e-18 Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 0
BLAST of Bhi11M002003 vs. Swiss-Prot
Match: sp|Q9FI03|NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 4.9e-09 Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 0
BLAST of Bhi11M002003 vs. TAIR10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 146.0 bits (367), Expect = 2.4e-35 Identity = 81/191 (42.41%), Postives = 117/191 (61.26%), Query Frame = 0
BLAST of Bhi11M002003 vs. TAIR10
Match: AT5G06320.1 (NDR1/HIN1-like 3) HSP 1 Score: 136.3 bits (342), Expect = 1.9e-32 Identity = 76/175 (43.43%), Postives = 108/175 (61.71%), Query Frame = 0
BLAST of Bhi11M002003 vs. TAIR10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 128.6 bits (322), Expect = 4.0e-30 Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 0
BLAST of Bhi11M002003 vs. TAIR10
Match: AT3G11650.1 (NDR1/HIN1-like 2) HSP 1 Score: 124.8 bits (312), Expect = 5.8e-29 Identity = 65/167 (38.92%), Postives = 103/167 (61.68%), Query Frame = 0
BLAST of Bhi11M002003 vs. TAIR10
Match: AT1G32270.1 (syntaxin, putative) HSP 1 Score: 93.2 bits (230), Expect = 1.9e-19 Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 0
BLAST of Bhi11M002003 vs. TrEMBL
Match: tr|A0A0A0LGS2|A0A0A0LGS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778960 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 9.0e-93 Identity = 170/193 (88.08%), Postives = 181/193 (93.78%), Query Frame = 0
BLAST of Bhi11M002003 vs. TrEMBL
Match: tr|A0A1S3B955|A0A1S3B955_CUCME (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487147 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 1.7e-91 Identity = 167/193 (86.53%), Postives = 179/193 (92.75%), Query Frame = 0
BLAST of Bhi11M002003 vs. TrEMBL
Match: tr|A0A1S3B970|A0A1S3B970_CUCME (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487148 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 9.7e-79 Identity = 151/191 (79.06%), Postives = 167/191 (87.43%), Query Frame = 0
BLAST of Bhi11M002003 vs. TrEMBL
Match: tr|A0A0A0LEQ7|A0A0A0LEQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778970 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 2.4e-77 Identity = 149/191 (78.01%), Postives = 167/191 (87.43%), Query Frame = 0
BLAST of Bhi11M002003 vs. TrEMBL
Match: tr|A0A1S3B7L1|A0A1S3B7L1_CUCME (protein YLS9 OS=Cucumis melo OX=3656 GN=LOC103486671 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.5e-42 Identity = 94/181 (51.93%), Postives = 128/181 (70.72%), Query Frame = 0
BLAST of Bhi11M002003 vs. NCBI nr
Match: XP_004136708.1 (PREDICTED: protein YLS9-like [Cucumis sativus]) HSP 1 Score: 348.6 bits (893), Expect = 1.4e-92 Identity = 170/193 (88.08%), Postives = 181/193 (93.78%), Query Frame = 0
BLAST of Bhi11M002003 vs. NCBI nr
Match: KGN59191.1 (hypothetical protein Csa_3G778960 [Cucumis sativus]) HSP 1 Score: 348.6 bits (893), Expect = 1.4e-92 Identity = 170/193 (88.08%), Postives = 181/193 (93.78%), Query Frame = 0
BLAST of Bhi11M002003 vs. NCBI nr
Match: XP_008443591.1 (PREDICTED: protein YLS9-like [Cucumis melo]) HSP 1 Score: 344.4 bits (882), Expect = 2.6e-91 Identity = 167/193 (86.53%), Postives = 179/193 (92.75%), Query Frame = 0
BLAST of Bhi11M002003 vs. NCBI nr
Match: XP_008443592.1 (PREDICTED: protein YLS9-like [Cucumis melo]) HSP 1 Score: 302.0 bits (772), Expect = 1.5e-78 Identity = 151/191 (79.06%), Postives = 167/191 (87.43%), Query Frame = 0
BLAST of Bhi11M002003 vs. NCBI nr
Match: XP_004136709.1 (PREDICTED: protein YLS9 [Cucumis sativus] >KGN59192.1 hypothetical protein Csa_3G778970 [Cucumis sativus]) HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77 Identity = 149/191 (78.01%), Postives = 167/191 (87.43%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
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