Bhi11M001272 (mRNA) Wax gourd

Overview
NameBhi11M001272
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr11 : 43047065 .. 43047301 (-)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGCGTAAAGCATCTGTAGGTGGCTTTTTAAGTTTGTCATCAAATCCTAGGGTCAACCCTGGACAGACAGTGGAAACTACCAAACTGGAGTACAGTATGGCAGAGGAAATTTCCTGTGGAGTGGTGAAATGCGTAAGGATCGAAAAGAACACCAACGACTGCGGAGTGGTGAAATGCTTAAGGATCGAAAAGAACACCAATGACGAAAGTACTCTGATGGGTCGAAATTGA

mRNA sequence

ATGATTGAGCGTAAAGCATCTGTAGGTGGCTTTTTAAGTTTGTCATCAAATCCTAGGGTCAACCCTGGACAGACAGTGGAAACTACCAAACTGGAGTACAGTATGGCAGAGGAAATTTCCTGTGGAGTGGTGAAATGCGTAAGGATCGAAAAGAACACCAACGACTGCGGAGTGGTGAAATGCTTAAGGATCGAAAAGAACACCAATGACGAAAGTACTCTGATGGGTCGAAATTGA

Coding sequence (CDS)

ATGATTGAGCGTAAAGCATCTGTAGGTGGCTTTTTAAGTTTGTCATCAAATCCTAGGGTCAACCCTGGACAGACAGTGGAAACTACCAAACTGGAGTACAGTATGGCAGAGGAAATTTCCTGTGGAGTGGTGAAATGCGTAAGGATCGAAAAGAACACCAACGACTGCGGAGTGGTGAAATGCTTAAGGATCGAAAAGAACACCAATGACGAAAGTACTCTGATGGGTCGAAATTGA

Protein sequence

MIERKASVGGFLSLSSNPRVNPGQTVETTKLEYSMAEEISCGVVKCVRIEKNTNDCGVVKCLRIEKNTNDESTLMGRN
Homology
[Close]
BLAST of Bhi11M001272 vs. TrEMBL
Match: tr|A0A2G3B150|A0A2G3B150_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_29977 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1   MIERKASVGGFLSLSSNPRVNPGQTVETTKLEYSMAEEISCGVVK 46
           +IERKASVGGFLS  SNP +N GQ +ETTKLEY    EIS G  K
Sbjct: 104 LIERKASVGGFLSPPSNPGLNLGQAIETTKLEYGRRREISGGAFK 148

[Close]
BLAST of Bhi11M001272 vs. NCBI nr
Match: PHU00190.1 (hypothetical protein BC332_29977 [Capsicum chinense])

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-06
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1   MIERKASVGGFLSLSSNPRVNPGQTVETTKLEYSMAEEISCGVVK 46
           +IERKASVGGFLS  SNP +N GQ +ETTKLEY    EIS G  K
Sbjct: 104 LIERKASVGGFLSPPSNPGLNLGQAIETTKLEYGRRREISGGAFK 148

The following BLAST results are available for this feature:
BLAST of Bhi11M001272 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi11M001272 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi11M001272 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2G3B150|A0A2G3B150_CAPCH3.4e-0666.67Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_29977 PE=4 SV=1[more]
BLAST of Bhi11M001272 vs. NCBI nr
Match NameE-valueIdentityDescription
PHU00190.15.1e-0666.67hypothetical protein BC332_29977 [Capsicum chinense][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi11G001272Bhi11G001272gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi11M001272cds.Bhi11M001272CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi11M001272.exon1Bhi11M001272.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi11M001272Bhi11M001272-proteinpolypeptide