Bhi10M001734 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M001734
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Glycosyltransferase
Location	chr10 : 53506381 .. 53506584 (+)
Sequence length	204

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGATTGCAATTGGGCTGTGTATATTTGTTTTGGAACTTTGGCCAAATTCTCAACAGAAGGAGATTAAAATTGGGCTGGAAGCTTCCGTGAAAAGGAAAATCATATGGATTGTTAGGAAAGAGAAAGGGGAAGAAGAGGAAGATGAACACAAGTACCACAAAGAAGGATACGAACATAAGATGGAAGGAACTAATTAG

mRNA sequence

ATGAAGAAGATTGCAATTGGGCTGTGTATATTTGTTTTGGAACTTTGGCCAAATTCTCAACAGAAGGAGATTAAAATTGGGCTGGAAGCTTCCGTGAAAAGGAAAATCATATGGATTGTTAGGAAAGAGAAAGGGGAAGAAGAGGAAGATGAACACAAGTACCACAAAGAAGGATACGAACATAAGATGGAAGGAACTAATTAG

Coding sequence (CDS)

ATGAAGAAGATTGCAATTGGGCTGTGTATATTTGTTTTGGAACTTTGGCCAAATTCTCAACAGAAGGAGATTAAAATTGGGCTGGAAGCTTCCGTGAAAAGGAAAATCATATGGATTGTTAGGAAAGAGAAAGGGGAAGAAGAGGAAGATGAACACAAGTACCACAAAGAAGGATACGAACATAAGATGGAAGGAACTAATTAG

Protein sequence

MKKIAIGLCIFVLELWPNSQQKEIKIGLEASVKRKIIWIVRKEKGEEEEDEHKYHKEGYEHKMEGTN

Homology

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BLAST of Bhi10M001734 vs. TrEMBL
Match: tr|A0A1S3BZB7|A0A1S3BZB7_CUCME (Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103495252 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-05
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   LCIFVLELWPNSQQKEIKIGLEASVKRKIIWIVRKEKGEEEEDEHKYHKEGYEHKMEG 66
           +C   L  + ++Q KEI IG+EAS K K IW+VRK KGEEEEDE  +  +GYE +MEG
Sbjct: 286 ICFGSLAKFNSAQLKEIAIGVEASGK-KFIWVVRKGKGEEEEDEQNWLPKGYEQRMEG 342

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BLAST of Bhi10M001734 vs. NCBI nr
Match: XP_008454968.1 (PREDICTED: scopoletin glucosyltransferase-like [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-05
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   LCIFVLELWPNSQQKEIKIGLEASVKRKIIWIVRKEKGEEEEDEHKYHKEGYEHKMEG 66
           +C   L  + ++Q KEI IG+EAS K K IW+VRK KGEEEEDE  +  +GYE +MEG
Sbjct: 286 ICFGSLAKFNSAQLKEIAIGVEASGK-KFIWVVRKGKGEEEEDEQNWLPKGYEQRMEG 342

The following BLAST results are available for this feature:

BLAST of Bhi10M001734 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M001734 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M001734 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZB7\|A0A1S3BZB7_CUCME	4.2e-05	55.17	Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103495252 PE=3 SV=1	[more]

BLAST of Bhi10M001734 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454968.1	6.4e-05	55.17	PREDICTED: scopoletin glucosyltransferase-like [Cucumis melo]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G001734	Bhi10G001734	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M001734.exon1	Bhi10M001734.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M001734	cds.Bhi10M001734	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M001734	Bhi10M001734-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..67