Bhi10M001718 (mRNA) Wax gourd

NameBhi10M001718
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr10 : 53174232 .. 53174564 (-)
Sequence length333
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGATCTGGGGAAGAATTCGACGACGACGACGAGTTCCTCCGCCGCCGGTCCATGGCGGCATCGCTCCAAAACTCGACCCACCTCGGCGTTCTTACAACCCCTGAATCCACACTCCGCCGTGAGAAATTCGCCGATGGTCCTATAGACTTCTCTGCGAGAGACCTCTGTTTCGAGAATAGAGGATCGGAATCGGAATCCGAAACAGAGCACCGAAATAGAGACTCCCGTTCGAAGAAATCAGACAAATCCAACCCACAGCAAAGAACCCGATTCTCATCAACAAAGAAAATTGGGTTCCCGGCCAAGGGCGGGTTGCAAGGAATGTAG

mRNA sequence

ATGAATCGATCTGGGGAAGAATTCGACGACGACGACGAGTTCCTCCGCCGCCGGTCCATGGCGGCATCGCTCCAAAACTCGACCCACCTCGGCGTTCTTACAACCCCTGAATCCACACTCCGCCGTGAGAAATTCGCCGATGGTCCTATAGACTTCTCTGCGAGAGACCTCTGTTTCGAGAATAGAGGATCGGAATCGGAATCCGAAACAGAGCACCGAAATAGAGACTCCCGTTCGAAGAAATCAGACAAATCCAACCCACAGCAAAGAACCCGATTCTCATCAACAAAGAAAATTGGGTTCCCGGCCAAGGGCGGGTTGCAAGGAATGTAG

Coding sequence (CDS)

ATGAATCGATCTGGGGAAGAATTCGACGACGACGACGAGTTCCTCCGCCGCCGGTCCATGGCGGCATCGCTCCAAAACTCGACCCACCTCGGCGTTCTTACAACCCCTGAATCCACACTCCGCCGTGAGAAATTCGCCGATGGTCCTATAGACTTCTCTGCGAGAGACCTCTGTTTCGAGAATAGAGGATCGGAATCGGAATCCGAAACAGAGCACCGAAATAGAGACTCCCGTTCGAAGAAATCAGACAAATCCAACCCACAGCAAAGAACCCGATTCTCATCAACAAAGAAAATTGGGTTCCCGGCCAAGGGCGGGTTGCAAGGAATGTAG

Protein sequence

MNRSGEEFDDDDEFLRRRSMAASLQNSTHLGVLTTPESTLRREKFADGPIDFSARDLCFENRGSESESETEHRNRDSRSKKSDKSNPQQRTRFSSTKKIGFPAKGGLQGM
BLAST of Bhi10M001718 vs. TrEMBL
Match: tr|A0A2P5ATC3|A0A2P5ATC3_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302210 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 64/113 (56.64%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 2   NRSGEEFDDDDEFLRRRSMAASLQNSTHLGVLT---TPESTLRREKFADGPIDFSARDLC 61
           N SGE+ DDD+EFLRRRS AASLQNSTHLGVL     P S L  EK  D P DFS  DLC
Sbjct: 4   NLSGEDEDDDNEFLRRRSTAASLQNSTHLGVLAPDPNPVSKLLLEKLEDDPADFSLADLC 63

Query: 62  -FENRGSEXXXXXXXXXXXXXXXXXDKSNPQQRTRFSSTKKIGFPAKGGLQGM 111
            F  RGS+                 ++S PQQ+ RFSSTK +GFPAK GLQGM
Sbjct: 64  FFRTRGSD----SELRNRDSRSKKSERSRPQQKIRFSSTKNMGFPAKEGLQGM 112

BLAST of Bhi10M001718 vs. TrEMBL
Match: tr|A0A2P5FYD7|A0A2P5FYD7_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_017920 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.4e-11
Identity = 46/91 (50.55%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 24  LQNSTHLGVLT---TPESTLRREKFADGPIDFSARDLC-FENRGSEXXXXXXXXXXXXXX 83
           LQNSTHLGVL     P S L  EK  + P DFS  DLC F  RGS+              
Sbjct: 26  LQNSTHLGVLAPDPNPVSKLLLEKLEEDPADFSLTDLCFFRTRGSD----SELRNRDSRS 85

Query: 84  XXXDKSNPQQRTRFSSTKKIGFPAKGGLQGM 111
              ++S PQQ+ RFSSTK +GFPAK GLQGM
Sbjct: 86  KKSERSRPQQKIRFSSTKNMGFPAKEGLQGM 112

BLAST of Bhi10M001718 vs. TrEMBL
Match: tr|A0A2P2QPJ3|A0A2P2QPJ3_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-08
Identity = 40/63 (63.49%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 2  NRSGEEFDD--DDEFLRRRSMAASLQNSTHLGVLTT---PESTLRREKFADGPIDFSARD 60
          NRSG++  D  D EF  RRS AASLQNSTHLGVLT+   P S L REKF D P  FS  D
Sbjct: 4  NRSGDDGSDEEDAEFRLRRSTAASLQNSTHLGVLTSVTIPVSKLLREKFDDKPAHFSPTD 63

BLAST of Bhi10M001718 vs. TrEMBL
Match: tr|A0A2N9H3G5|A0A2N9H3G5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34297 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.0e-05
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 0

Query: 11 DDEFLRRRSMAASLQNSTHLGVLTTPEST---LRREKFADGPIDFSARDLC 59
          ++EFLRRRS AASLQNSTH GVL   + T   L REK  D   DFS  DLC
Sbjct: 6  NEEFLRRRSTAASLQNSTHWGVLAPADPTMSKLLREKLEDDLADFSLTDLC 56

BLAST of Bhi10M001718 vs. NCBI nr
Match: PON39792.1 (hypothetical protein PanWU01x14_302210 [Parasponia andersonii])

HSP 1 Score: 107.1 bits (266), Expect = 4.0e-20
Identity = 64/113 (56.64%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 2   NRSGEEFDDDDEFLRRRSMAASLQNSTHLGVLT---TPESTLRREKFADGPIDFSARDLC 61
           N SGE+ DDD+EFLRRRS AASLQNSTHLGVL     P S L  EK  D P DFS  DLC
Sbjct: 4   NLSGEDEDDDNEFLRRRSTAASLQNSTHLGVLAPDPNPVSKLLLEKLEDDPADFSLADLC 63

Query: 62  -FENRGSEXXXXXXXXXXXXXXXXXDKSNPQQRTRFSSTKKIGFPAKGGLQGM 111
            F  RGS+                 ++S PQQ+ RFSSTK +GFPAK GLQGM
Sbjct: 64  FFRTRGSD----SELRNRDSRSKKSERSRPQQKIRFSSTKNMGFPAKEGLQGM 112

BLAST of Bhi10M001718 vs. NCBI nr
Match: POO02806.1 (hypothetical protein TorRG33x02_017920 [Trema orientalis])

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 46/91 (50.55%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 24  LQNSTHLGVLT---TPESTLRREKFADGPIDFSARDLC-FENRGSEXXXXXXXXXXXXXX 83
           LQNSTHLGVL     P S L  EK  + P DFS  DLC F  RGS+              
Sbjct: 26  LQNSTHLGVLAPDPNPVSKLLLEKLEEDPADFSLTDLCFFRTRGSD----SELRNRDSRS 85

Query: 84  XXXDKSNPQQRTRFSSTKKIGFPAKGGLQGM 111
              ++S PQQ+ RFSSTK +GFPAK GLQGM
Sbjct: 86  KKSERSRPQQKIRFSSTKNMGFPAKEGLQGM 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P5ATC3|A0A2P5ATC3_PARAD2.6e-2056.64Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302210 PE... [more]
tr|A0A2P5FYD7|A0A2P5FYD7_9ROSA8.4e-1150.55Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_017920 PE=4 S... [more]
tr|A0A2P2QPJ3|A0A2P2QPJ3_RHIMU3.9e-0863.49Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2N9H3G5|A0A2N9H3G5_FAGSY9.0e-0560.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34297 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
PON39792.14.0e-2056.64hypothetical protein PanWU01x14_302210 [Parasponia andersonii][more]
POO02806.11.3e-1050.55hypothetical protein TorRG33x02_017920 [Trema orientalis][more]

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi10G001718Bhi10G001718gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi10M001718cds.Bhi10M001718CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi10M001718.exon1Bhi10M001718.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi10M001718Bhi10M001718-proteinpolypeptide


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..87