Bhi10M000496 (mRNA) Wax gourd

Overview
NameBhi10M000496
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionVesicle-associated membrane protein
Locationchr10 : 13369310 .. 13370119 (-)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCCGACTTTAAAAAAATATATAGAGGCGGTAAAGTCGATACTGCTGTTGCGAAAAGTCTCAATAAGGATAAGGTAAATTCAAACACACACACACAAAATAAATAAATTTAAAAAAAAAAGCTTTATTTTAATTGCGTTTGGGTGTATTTGCCTTAGTATGGTATCAAGAGGCATAATCTTGCTCATATTTTGCAGATCGAAAAGTTGATAAAAATGAAAGCTCAAGTATCAGAAGTTAAGAGTATAACATTGGAGAATCTCGACAAGGTAAAAATACATCGACATGTAGATTTGTTTGAATTTGCATCTCTCTAATCGTTGTCATATAATGTTTATCATTATCATTTTGTTCTATAAAATTTGTGGTTTGGTGATCACCTTGAATTGGCCTAGTCGATAGAGAGTCGTAAAGTCAAGTTTAAGACGCATGTTTGCGGCATACTTTTAATCATTAACACAATTTACTACTAACTATCTAATATACATGTGAAACTTAATATACTTCTTGGAGATTCTTCCATAGCTAATGTGCATGTAAAACTATACTTTTTGTCTGATTTTTTTTTCTTGCTTTTATGATTATTTGGAAGTAGAATGTGAAGTATTTGCATATCTAATGAAGGGTTGTAACTAAGAATGTTTTAGTTGAAGTTAATGAACATTTTTTTGGGTGTCCTTTTTTTTGTTTTGCATGGTTATCTTTTTCTTTGTTAAACCTTGTTGTTTCAGACCATGCTTGATAACTTGTATGACAATATTTTTATTTGCATATCAAAGTGGCAACTATTCACCTCTGAATATAAG

mRNA sequence

ATGAAGGCCGACTTTAAAAAAATATATAGAGGCGGTAAAGTCGATACTGCTGTTGCGAAAAGTCTCAATAAGGATAAGATCGAAAAGTTGATAAAAATGAAAGCTCAAGTATCAGAAGTTAAGAGTATAACATTGGAGAATCTCGACAAGACCATGCTTGATAACTTGTATGACAATATTTTTATTTGCATATCAAAGTGGCAACTATTCACCTCTGAATATAAG

Coding sequence (CDS)

ATGAAGGCCGACTTTAAAAAAATATATAGAGGCGGTAAAGTCGATACTGCTGTTGCGAAAAGTCTCAATAAGGATAAGATCGAAAAGTTGATAAAAATGAAAGCTCAAGTATCAGAAGTTAAGAGTATAACATTGGAGAATCTCGACAAGACCATGCTTGATAACTTGTATGACAATATTTTTATTTGCATATCAAAGTGGCAACTATTCACCTCTGAATATAAG

Protein sequence

MKADFKKIYRGGKVDTAVAKSLNKDKIEKLIKMKAQVSEVKSITLENLDKTMLDNLYDNIFICISKWQLFTSEYK
Homology
[Close]
BLAST of Bhi10M000496 vs. TAIR10
Match: AT4G15780.1 (vesicle-associated membrane protein 724)

HSP 1 Score: 66.2 bits (160), Expect = 9.6e-12
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +KADFKK Y GGK  TA+AKSLNK                 ++IEKLIK+KAQVSEVKSI
Sbjct: 86  VKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSI 145

[Close]
BLAST of Bhi10M000496 vs. TAIR10
Match: AT1G04750.1 (vesicle-associated membrane protein 721)

HSP 1 Score: 51.6 bits (122), Expect = 2.4e-07
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLNK                 D+I KL K+KAQVSEVK +
Sbjct: 85  VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 144

[Close]
BLAST of Bhi10M000496 vs. TAIR10
Match: AT2G33120.2 (synaptobrevin-related protein 1)

HSP 1 Score: 51.6 bits (122), Expect = 2.4e-07
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLNK                 D+I KL K+KAQVSEVK +
Sbjct: 93  VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 152

[Close]
BLAST of Bhi10M000496 vs. TAIR10
Match: AT2G32670.1 (vesicle-associated membrane protein 725)

HSP 1 Score: 49.7 bits (117), Expect = 9.3e-07
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLN+                 D+I KL K+KAQV+EVK +
Sbjct: 150 VKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGV 209

[Close]
BLAST of Bhi10M000496 vs. TAIR10
Match: AT1G04760.1 (vesicle-associated membrane protein 726)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLNK                 ++I KL K+KAQV+EVK +
Sbjct: 85  VKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGV 144

[Close]
BLAST of Bhi10M000496 vs. Swiss-Prot
Match: sp|O23429|VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana OX=3702 GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-10
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +KADFKK Y GGK  TA+AKSLNK                 ++IEKLIK+KAQVSEVKSI
Sbjct: 86  VKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSI 145

[Close]
BLAST of Bhi10M000496 vs. Swiss-Prot
Match: sp|Q9ZTW3|VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana OX=3702 GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-06
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLNK                 D+I KL K+KAQVSEVK +
Sbjct: 85  VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 144

[Close]
BLAST of Bhi10M000496 vs. Swiss-Prot
Match: sp|P47192|VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana OX=3702 GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-06
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLNK                 D+I KL K+KAQVSEVK +
Sbjct: 85  VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 144

[Close]
BLAST of Bhi10M000496 vs. Swiss-Prot
Match: sp|O48850|VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana OX=3702 GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLN+                 D+I KL K+KAQV+EVK +
Sbjct: 150 VKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGV 209

[Close]
BLAST of Bhi10M000496 vs. Swiss-Prot
Match: sp|Q9MAS5|VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana OX=3702 GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +K DF K Y GGK  TA A SLNK                 ++I KL K+KAQV+EVK +
Sbjct: 85  VKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGV 144

[Close]
BLAST of Bhi10M000496 vs. TrEMBL
Match: tr|A0A1S3C946|A0A1S3C946_CUCME (vesicle-associated membrane protein 724 OS=Cucumis melo OX=3656 GN=LOC103497857 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-10
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 51
           MKADFKK Y GGK DTAVAKSLNKD                 +IEKLIK+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKDFGPIMREHMKYIIEHAEEIEKLIKVKAQVSEVKSI 144

[Close]
BLAST of Bhi10M000496 vs. TrEMBL
Match: tr|A0A0A0KFI2|A0A0A0KFI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194170 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-10
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 51
           MKADFKK Y GGK DTAVAKSLNKD                 +IEKLIK+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKDFGPIMREHMKYIIEHAEEIEKLIKVKAQVSEVKSI 144

[Close]
BLAST of Bhi10M000496 vs. TrEMBL
Match: tr|D7T6E9|D7T6E9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01430 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-10
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 53
           MKADFKK Y GGK DTA AKSLNKD                 +IEKL+K+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTATAKSLNKDFGPIMKEHMQYIIDHAEEIEKLLKVKAQVSEVKSI 144

[Close]
BLAST of Bhi10M000496 vs. TrEMBL
Match: tr|A0A1U7ZYL8|A0A1U7ZYL8_NELNU (vesicle-associated membrane protein 724 OS=Nelumbo nucifera OX=4432 GN=LOC104598994 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 59
           MKADFKK Y GGK DTA+AKSLNK                 ++IEKL+K+KAQVSEVKSI
Sbjct: 86  MKADFKKRYGGGKADTAIAKSLNKEFGPVMKEHMQYIIDHAEEIEKLLKVKAQVSEVKSI 145

[Close]
BLAST of Bhi10M000496 vs. TrEMBL
Match: tr|M5XN05|M5XN05_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G137700 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 60
           MKADF+K Y GGK DTA+AKSLNK                 ++IEKL+K+KAQVSEVKSI
Sbjct: 85  MKADFRKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLLKVKAQVSEVKSI 144

Query: 61  TLENLDKTMLDNLYDNIFICISKWQLFTSE 74
            LEN+DK +  +  +N+ + + K +   S+
Sbjct: 145 MLENIDKAI--DRGENLTVLVDKTETLRSQ 172

[Close]
BLAST of Bhi10M000496 vs. NCBI nr
Match: XP_011090953.1 (vesicle-associated membrane protein 724 [Sesamum indicum])

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-10
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNK-----------------DKIEKLIKMKAQVSEVKSI 53
           +KADFKK Y GGK DTAVAKSLNK                 D+IEKL+K+KAQVSEVKSI
Sbjct: 86  IKADFKKRYGGGKADTAVAKSLNKEFGPLMKEHMQYIIDHADEIEKLLKVKAQVSEVKSI 145

[Close]
BLAST of Bhi10M000496 vs. NCBI nr
Match: XP_004143088.1 (PREDICTED: vesicle-associated membrane protein 724 [Cucumis sativus] >KGN47182.1 hypothetical protein Csa_6G194170 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 51
           MKADFKK Y GGK DTAVAKSLNKD                 +IEKLIK+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKDFGPIMREHMKYIIEHAEEIEKLIKVKAQVSEVKSI 144

[Close]
BLAST of Bhi10M000496 vs. NCBI nr
Match: XP_008458455.1 (PREDICTED: vesicle-associated membrane protein 724 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 51
           MKADFKK Y GGK DTAVAKSLNKD                 +IEKLIK+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKDFGPIMREHMKYIIEHAEEIEKLIKVKAQVSEVKSI 144

[Close]
BLAST of Bhi10M000496 vs. NCBI nr
Match: XP_022959406.1 (vesicle-associated membrane protein 724 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 51
           MKADFKK Y GGK DTAVAKSLNKD                 +IEKLIK+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKDFGPVMKEHMKYIIEHAEEIEKLIKVKAQVSEVKSI 144

[Close]
BLAST of Bhi10M000496 vs. NCBI nr
Match: XP_023006451.1 (vesicle-associated membrane protein 724 [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MKADFKKIYRGGKVDTAVAKSLNKD-----------------KIEKLIKMKAQVSEVKSI 51
           MKADFKK Y GGK DTAVAKSLNKD                 +IEKLIK+KAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKDFGPIMKEHMKYIIEHAEEIEKLIKVKAQVSEVKSI 144

The following BLAST results are available for this feature:
BLAST of Bhi10M000496 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15780.19.6e-1256.52vesicle-associated membrane protein 724[more]
AT1G04750.12.4e-0744.93vesicle-associated membrane protein 721[more]
AT2G33120.22.4e-0744.93synaptobrevin-related protein 1[more]
AT2G32670.19.3e-0742.03vesicle-associated membrane protein 725[more]
AT1G04760.11.2e-0642.03vesicle-associated membrane protein 726[more]
BLAST of Bhi10M000496 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23429|VA724_ARATH1.7e-1056.52Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana OX=3702 GN=VAMP7... [more]
sp|Q9ZTW3|VA721_ARATH4.4e-0644.93Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana OX=3702 GN=VAMP7... [more]
sp|P47192|VA722_ARATH4.4e-0644.93Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana OX=3702 GN=VAMP7... [more]
sp|O48850|VA725_ARATH1.7e-0542.03Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana OX=3702 GN=VAMP7... [more]
sp|Q9MAS5|VA726_ARATH2.2e-0542.03Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana OX=3702... [more]
BLAST of Bhi10M000496 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C946|A0A1S3C946_CUCME4.9e-1065.67vesicle-associated membrane protein 724 OS=Cucumis melo OX=3656 GN=LOC103497857 ... [more]
tr|A0A0A0KFI2|A0A0A0KFI2_CUCSA4.9e-1065.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194170 PE=3 SV=1[more]
tr|D7T6E9|D7T6E9_VITVI6.4e-1060.87Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01430 PE=3 SV=... [more]
tr|A0A1U7ZYL8|A0A1U7ZYL8_NELNU2.4e-0955.00vesicle-associated membrane protein 724 OS=Nelumbo nucifera OX=4432 GN=LOC104598... [more]
tr|M5XN05|M5XN05_PRUPE2.4e-0946.67Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G137700 PE=3 SV=1[more]
BLAST of Bhi10M000496 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011090953.14.3e-1062.32vesicle-associated membrane protein 724 [Sesamum indicum][more]
XP_004143088.17.4e-1065.67PREDICTED: vesicle-associated membrane protein 724 [Cucumis sativus] >KGN47182.1... [more]
XP_008458455.17.4e-1065.67PREDICTED: vesicle-associated membrane protein 724 [Cucumis melo][more]
XP_022959406.17.4e-1065.67vesicle-associated membrane protein 724 [Cucurbita moschata][more]
XP_023006451.17.4e-1065.67vesicle-associated membrane protein 724 [Cucurbita maxima][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi10G000496Bhi10G000496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi10M000496.exon3Bhi10M000496.exon3exon
Bhi10M000496.exon2Bhi10M000496.exon2exon
Bhi10M000496.exon1Bhi10M000496.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi10M000496cds.Bhi10M000496CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi10M000496Bhi10M000496-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21136:SF72VESICLE-ASSOCIATED MEMBRANE PROTEIN 724coord: 1..25
NoneNo IPR availablePANTHERPTHR21136SNARE PROTEINScoord: 25..52
NoneNo IPR availablePANTHERPTHR21136:SF72VESICLE-ASSOCIATED MEMBRANE PROTEIN 724coord: 25..52
NoneNo IPR availablePANTHERPTHR21136SNARE PROTEINScoord: 1..25