Bhi08M000541 (mRNA) Wax gourd

NameBhi08M000541
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrotransposon protein
Locationchr8 : 20434151 .. 20434527 (+)
Sequence length377
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGTGCTCGTGGATCTTCTTGTTGTTGTCGGCATTCAAATTGACGATGACGAGAGTCTTCTGCACATCCTTAATGGCTTACCAATCGAGTTCAACACATTTCGCACCTCTATCCGAATGCGCAATACCACCCTGCTAATTGTAGAACTTGAGGTTTTTCTTGACATCGAATCCAAAGCAATCGACACTTCACATTCACCAGCGAAACTTACACCGACTGCCATGGCCACATTTCAACATCTTGGTCGTGGATCTTCCTTCACTAGTGGTAGCAATCATGGGTCGCCTAGAGGAAATCACCATGGGGGTCGTGGGAGAGGAAGGAATGGAAGAGGCTTCTTCCAAAATCAATCTCAAAACCCTAACCTCTC

mRNA sequence

ATGGTGAAGGTGCTCGTGGATCTTCTTGTTGTTGTCGGCATTCAAATTGACGATGACGAGAGTCTTCTGCACATCCTTAATGGCTTACCAATCGAGTTCAACACATTTCGCACCTCTATCCGAATGCGCAATACCACCCTGCTAATTGTAGAACTTGAGGTTTTTCTTGACATCGAATCCAAAGCAATCGACACTTCACATTCACCAGCGAAACTTACACCGACTGCCATGGCCACATTTCAACATCTTGGTCGTGGATCTTCCTTCACTAGTGGTAGCAATCATGGGTCGCCTAGAGGAAATCACCATGGGGGTCGTGGGAGAGGAAGGAATGGAAGAGGCTTCTTCCAAAATCAATCTCAAAACCCTAACCTCTC

Coding sequence (CDS)

ATGGTGAAGGTGCTCGTGGATCTTCTTGTTGTTGTCGGCATTCAAATTGACGATGACGAGAGTCTTCTGCACATCCTTAATGGCTTACCAATCGAGTTCAACACATTTCGCACCTCTATCCGAATGCGCAATACCACCCTGCTAATTGTAGAACTTGAGGTTTTTCTTGACATCGAATCCAAAGCAATCGACACTTCACATTCACCAGCGAAACTTACACCGACTGCCATGGCCACATTTCAACATCTTGGTCGTGGATCTTCCTTCACTAGTGGTAGCAATCATGGGTCGCCTAGAGGAAATCACCATGGGGGTCGTGGGAGAGGAAGGAATGGAAGAGGCTTCTTCCAAAATCAATCTCAAAACCCTAACCTCTC

Protein sequence

MVKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESKAIDTSHSPAKLTPTAMATFQHLGRGSSFTSGSNHGSPRGNHHGGRGRGRNGRGFFQNQSQNPNL
BLAST of Bhi08M000541 vs. TrEMBL
Match: tr|A0A1S4E394|A0A1S4E394_CUCME (uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-08
Identity = 44/99 (44.44%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K LVD L    + ++D+E L+H LNGLP  FN FRTSIR RN  + + EL   L I  +
Sbjct: 59  IKALVDKLDAASVSLEDEEILVHTLNGLPAAFNAFRTSIRTRNGNISLEELHTLL-ISEE 118

Query: 62  AIDTSHSPAKLTPTAMATF---QH---LGRGSSFTSGSN 95
            I    S  +  PTAMA F   QH    GRG  F S  N
Sbjct: 119 TIMAKTSAIEAIPTAMAAFHPPQHHGSRGRGRRFHSTGN 156

BLAST of Bhi08M000541 vs. TrEMBL
Match: tr|E5GBM9|E5GBM9_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K LVD L V  + ++D+E L+H LNGLP  FNTF TSIR R+  + + EL   L  E  
Sbjct: 17  IKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGNISLEELHTLLISEET 76

Query: 62  AIDTSHSPA-KLTPTAMATF---QH---LGRGSSFTSGSN 95
            +  + +PA +  PTAMA F   QH    GRG  F S  N
Sbjct: 77  TM--AKTPAIEAIPTAMAAFHPTQHHDNRGRGRRFHSTGN 114

BLAST of Bhi08M000541 vs. TrEMBL
Match: tr|A0A1S4E4S1|A0A1S4E4S1_CUCME (uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K  VD L    I ++++  L+H LNGLP  F+ FRTSIR R+  + + EL   L I  +
Sbjct: 159 IKAFVDKLAAASISLENEGILVHTLNGLPAAFHAFRTSIRTRSGNISLEELHTLL-ISEE 218

Query: 62  AIDTSHSPAKLTPTAMATF 81
              T  S  +  PTAMA F
Sbjct: 219 TTMTKASAIEAIPTAMAAF 236

BLAST of Bhi08M000541 vs. TrEMBL
Match: tr|A0A2N9I7A1|A0A2N9I7A1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48170 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.6e-04
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           VK   D L  VG+QIDD+E L  IL GLP E+++F ++IR R+ +L   +L V L  E  
Sbjct: 73  VKTARDKLSAVGVQIDDEEMLHMILKGLPKEYSSFNSAIRTRDDSLTFEKLSVLLQTEEL 132

Query: 62  AI-DTSHSPAKLTPTAMATFQHLGRGSSFTSG 93
           +I ++S     L      T +H G  S+F  G
Sbjct: 133 SINESSDMNTTLAMFVSNTNKHNGGNSNFHRG 164

BLAST of Bhi08M000541 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 44/99 (44.44%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K LVD L    + ++D+E L+H LNGLP  FN FRTSIR RN  + + EL   L I  +
Sbjct: 59  IKALVDKLDAASVSLEDEEILVHTLNGLPAAFNAFRTSIRTRNGNISLEELHTLL-ISEE 118

Query: 62  AIDTSHSPAKLTPTAMATF---QH---LGRGSSFTSGSN 95
            I    S  +  PTAMA F   QH    GRG  F S  N
Sbjct: 119 TIMAKTSAIEAIPTAMAAFHPPQHHGSRGRGRRFHSTGN 156

BLAST of Bhi08M000541 vs. NCBI nr
Match: ADN33871.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K LVD L V  + ++D+E L+H LNGLP  FNTF TSIR R+  + + EL   L  E  
Sbjct: 17  IKALVDKLAVASVSLEDEEILVHTLNGLPAAFNTFHTSIRTRSGNISLEELHTLLISEET 76

Query: 62  AIDTSHSPA-KLTPTAMATF---QH---LGRGSSFTSGSN 95
            +  + +PA +  PTAMA F   QH    GRG  F S  N
Sbjct: 77  TM--AKTPAIEAIPTAMAAFHPTQHHDNRGRGRRFHSTGN 114

BLAST of Bhi08M000541 vs. NCBI nr
Match: XP_022158378.1 (uncharacterized protein LOC111024876 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-05
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K L D L  V + +DD++ +++ LNGLP EFNTFRTS+R R+  +   EL V L+ E  
Sbjct: 101 IKELKDKLANVSVLVDDEDLVIYTLNGLPSEFNTFRTSMRTRSRLISFAELHVLLNSEVV 160

Query: 62  AIDTSHSPAKLTPTAMATFQHLGRGS---------SFTSG--SNHGSPR 100
           AID       L     A   + G  S         ++T G  SN G P+
Sbjct: 161 AIDKQSKSDDLFVQPAALVVNSGSNSQVRNQNLNPNYTKGRTSNGGKPK 209

BLAST of Bhi08M000541 vs. NCBI nr
Match: XP_016902970.1 (PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 4.5e-04
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 2   VKVLVDLLVVVGIQIDDDESLLHILNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIESK 61
           +K  VD L    I ++++  L+H LNGLP  F+ FRTSIR R+  + + EL   L I  +
Sbjct: 159 IKAFVDKLAAASISLENEGILVHTLNGLPAAFHAFRTSIRTRSGNISLEELHTLL-ISEE 218

Query: 62  AIDTSHSPAKLTPTAMATF 81
              T  S  +  PTAMA F
Sbjct: 219 TTMTKASAIEAIPTAMAAF 236

BLAST of Bhi08M000541 vs. NCBI nr
Match: XP_023922287.1 (uncharacterized protein LOC112033743 [Quercus suber])

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 2  VKVLVDLLVVVGIQIDDDESLLHI-LNGLPIEFNTFRTSIRMRNTTLLIVELEVFLDIES 61
          +KV+ D L+ VG+ IDD+E LLHI   GLP EFN FR++IR RNT L   EL   L+ E 
Sbjct: 24 IKVVRDKLLAVGVTIDDEE-LLHITFKGLPKEFNAFRSAIRTRNTKLSFDELSTMLNAEE 83

Query: 62 KAID 65
          ++++
Sbjct: 84 ESLN 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E394|A0A1S4E394_CUCME9.9e-0844.44uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=... [more]
tr|E5GBM9|E5GBM9_CUCME3.8e-0744.00Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E4S1|A0A1S4E4S1_CUCME3.0e-0440.51uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=... [more]
tr|A0A2N9I7A1|A0A2N9I7A1_FAGSY6.6e-0439.13Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48170 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_016902697.11.5e-0744.44PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo][more]
ADN33871.15.7e-0744.00retrotransposon protein [Cucumis melo subsp. melo][more]
XP_022158378.17.0e-0536.70uncharacterized protein LOC111024876 [Momordica charantia][more]
XP_016902970.14.5e-0440.51PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo][more]
XP_023922287.15.9e-0450.00uncharacterized protein LOC112033743 [Quercus suber][more]

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi08G000541Bhi08G000541gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi08M000541.exon1Bhi08M000541.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi08M000541cds.Bhi08M000541CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi08M000541Bhi08M000541-proteinpolypeptide


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..52
e-value: 1.5E-6
score: 27.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..125