Bhi08M000525 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08M000525
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Ring finger protein
Location	chr8 : 20057771 .. 20058259 (+)
Sequence length	489

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCACCGCCTCCACAACCGGCGGAGTTATCCGTTGACGTTCTCTCAACTCTAGATCTCGACTTTCTAAATTTCGCAGGACTGTCCGCTCTGGCGTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACGCAAATACTGGAATCGAAACGGAGATATCGAAGGCGGAAGGCCGCCGTCGTCGGGGACGGTGGCTGAACCTCTGGCTTCAGAGGCAGGGGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGATGGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTTCAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGACATTGTCCTGTTTGTCGTTCCCCTGTTCACGTTCGTATCGTTTATTCAAATCCCTCTTGA

mRNA sequence

ATGCCTCCACCGCCTCCACAACCGGCGGAGTTATCCGTTGACGTTCTCTCAACTCTAGATCTCGACTTTCTAAATTTCGCAGGACTGTCCGCTCTGGCGTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACGCAAATACTGGAATCGAAACGGAGATATCGAAGGCGGAAGGCCGCCGTCGTCGGGGACGGTGGCTGAACCTCTGGCTTCAGAGGCAGGGGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGATGGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTTCAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGACATTGTCCTGTTTGTCGTTCCCCTGTTCACGTTCGTATCGTTTATTCAAATCCCTCTTGA

Coding sequence (CDS)

ATGCCTCCACCGCCTCCACAACCGGCGGAGTTATCCGTTGACGTTCTCTCAACTCTAGATCTCGACTTTCTAAATTTCGCAGGACTGTCCGCTCTGGCGTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACGCAAATACTGGAATCGAAACGGAGATATCGAAGGCGGAAGGCCGCCGTCGTCGGGGACGGTGGCTGAACCTCTGGCTTCAGAGGCAGGGGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGATGGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTTCAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGACATTGTCCTGTTTGTCGTTCCCCTGTTCACGTTCGTATCGTTTATTCAAATCCCTCTTGA

Protein sequence

MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPPSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS

Homology

[Close]

BLAST of Bhi08M000525 vs. Swiss-Prot
Match: sp|Q9LX93|ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 82  RASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPN 141
           R++   I+   F+ GEG + G   +CS+CL+EF E E  R+LPKC H FH  CID WL +
Sbjct: 112 RSAINSITVVGFKKGEGIIDG--TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLS 171

Query: 142 ERHCPVCRSPV 153
            ++CP+CR+PV
Sbjct: 172 HKNCPLCRAPV 180

[Close]

BLAST of Bhi08M000525 vs. Swiss-Prot
Match: sp|Q7XLY8|ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-13
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 85  TAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERH 144
           T +    + +Y  G       DCS+CL EFS+GE  R+LP+C H FH+ CID WL +  +
Sbjct: 135 TLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSN 194

Query: 145 CPVCRSPV 153
           CP+CR+ +
Sbjct: 195 CPLCRANI 202

[Close]

BLAST of Bhi08M000525 vs. Swiss-Prot
Match: sp|Q5XF85|ATL42_ARATH (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-13
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 85  TAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERH 144
           TA+ S  LF++       +  DCS+CL +F   EI R+LPKC+H FH  CIDQWL     
Sbjct: 101 TAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHAT 160

Query: 145 CPVCRSPV 153
           CP+CR  V
Sbjct: 161 CPLCRDRV 168

[Close]

BLAST of Bhi08M000525 vs. Swiss-Prot
Match: sp|P0C041|ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-13
Identity = 51/164 (31.10%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 2   PPPPPQPAELSVDVLSTLDLDFLNFA--GLSALALMIV--YFIFTCYERKYWNRNGDIEG 61
           PPP      L+  V S  +L  L  A  G+ A A ++   Y + + Y           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 62  GRPPSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYG-------EGGLMGKNADCSIC 121
           GR      V  P   +  D  +   ++  +  T + + G       + G      DCSIC
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 122 LDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHV 155
           L EF+E E  R+LPKC H FH  CID+WL +  +CP+CR+ + V
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of Bhi08M000525 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 75  GDSSSRRRAST--------AVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKC 134
           G  SS +R ST         + S  +++Y  G      +DCS+CL EF E E  R+LPKC
Sbjct: 102 GFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKC 161

Query: 135 KHVFHRFCIDQWLPNERHCPVCRS 151
            H FH  CID WL +  +CP+CR+
Sbjct: 162 NHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Bhi08M000525 vs. TAIR10
Match: AT4G33565.1 (RING/U-box superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 85  TAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERH 144
           T + S K+ QY +   + +  DCS+CL EF E E  R+LPKCKH FH +CID WL +  +
Sbjct: 195 TVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTN 254

Query: 145 CPVCRSPV 153
           CP+CR+P+
Sbjct: 255 CPLCRAPI 262

[Close]

BLAST of Bhi08M000525 vs. TAIR10
Match: AT5G10380.1 (RING/U-box superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 82  RASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPN 141
           R++   I+   F+ GEG + G   +CS+CL+EF E E  R+LPKC H FH  CID WL +
Sbjct: 112 RSAINSITVVGFKKGEGIIDG--TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLS 171

Query: 142 ERHCPVCRSPV 153
            ++CP+CR+PV
Sbjct: 172 HKNCPLCRAPV 180

[Close]

BLAST of Bhi08M000525 vs. TAIR10
Match: AT4G28890.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 85  TAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERH 144
           TA+ S  LF++       +  DCS+CL +F   EI R+LPKC+H FH  CIDQWL     
Sbjct: 101 TAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHAT 160

Query: 145 CPVCRSPV 153
           CP+CR  V
Sbjct: 161 CPLCRDRV 168

[Close]

BLAST of Bhi08M000525 vs. TAIR10
Match: AT4G17905.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14
Identity = 51/164 (31.10%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 2   PPPPPQPAELSVDVLSTLDLDFLNFA--GLSALALMIV--YFIFTCYERKYWNRNGDIEG 61
           PPP      L+  V S  +L  L  A  G+ A A ++   Y + + Y           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 62  GRPPSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYG-------EGGLMGKNADCSIC 121
           GR      V  P   +  D  +   ++  +  T + + G       + G      DCSIC
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 122 LDEFSEGEICRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHV 155
           L EF+E E  R+LPKC H FH  CID+WL +  +CP+CR+ + V
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of Bhi08M000525 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.8e-14
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 75  GDSSSRRRAST--------AVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKC 134
           G  SS +R ST         + S  +++Y  G      +DCS+CL EF E E  R+LPKC
Sbjct: 102 GFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKC 161

Query: 135 KHVFHRFCIDQWLPNERHCPVCRS 151
            H FH  CID WL +  +CP+CR+
Sbjct: 162 NHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Bhi08M000525 vs. TrEMBL
Match: tr|A0A0A0M0H1|A0A0A0M0H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-63
Identity = 122/153 (79.74%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 11  LSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPPSSGTVAEPL 70
           L VDVLSTLDLDFLNFAGLSALALM +YF+FTC ERKYWNRNGDIEGGR P+  T+ E  
Sbjct: 22  LPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTV-TMDESP 81

Query: 71  ASEAGDSSSRRRASTAVISTKLFQYG-EGGLMGKNADCSICLDEFSEGEICRMLPKCKHV 130
           ASE  DS  RR +S AVIST+LFQYG  GG++GKNADCSICLDEF+EGEICRMLPKCKHV
Sbjct: 82  ASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHV 141

Query: 131 FHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           FHRFCID+WLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 142 FHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of Bhi08M000525 vs. TrEMBL
Match: tr|A0A1S3C5T1|A0A1S3C5T1_CUCME (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.7e-63
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 1   MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRP 60
           MP       +L V  LS LDLDFLN AGLSALA+M +YFIFTCYERK+WNRNGDIEGG+ 
Sbjct: 12  MPSXXXXXXDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 71

Query: 61  PSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYG-EGGLMGKNADCSICLDEFSEGEI 120
           PS  T+ E  ASE GDSS RR +S AVIST+LFQYG  GG++GKNADCSICLDEF+EGEI
Sbjct: 72  PSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEI 131

Query: 121 CRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           CRMLPKCKHVFHRFCIDQWLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 132 CRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of Bhi08M000525 vs. TrEMBL
Match: tr|A0A061DKW1|A0A061DKW1_THECC (RING-H2 finger protein ATL5F, putative OS=Theobroma cacao OX=3641 GN=TCM_001923 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 50/138 (36.23%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 20  DLDFLNFAGLSALALMIVYFIFTC----YERKYWNRNGDIEGGRPPSSGTVAEPLASEAG 79
           DL    +  + AL L+IV F+F C     E    +   DIE GRP ++       A++  
Sbjct: 10  DLQLAIWVTIIAL-LIIVAFLFCCDKGSRESLRTHPPQDIETGRPSNN------QATQRQ 69

Query: 80  DSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRMLPKCKHVFHRFCI 139
             +S++ A+  V++  +  Y +G      ADC+ICL+E  +G+ CR+  KCKH++H+ CI
Sbjct: 70  PPASQQAAAVPVLAGTIVIYKDGETKSNCADCAICLEELKDGDECRVPSKCKHIYHKLCI 129

Query: 140 DQWLPNERHCPVCRSPVH 154
           D+WL  + HCP+CR+ VH
Sbjct: 130 DKWLVKDTHCPLCRASVH 140

[Close]

BLAST of Bhi08M000525 vs. TrEMBL
Match: tr|M5X0D2|M5X0D2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007682mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.4e-15
Identity = 53/160 (33.12%), Postives = 71/160 (44.38%), Query Frame = 0


Query: 2   PPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPP 61
           PPPP   AE      S  D   L  A +   A   +   +     KY  R  D +GGR  
Sbjct: 38  PPPPFDFAEADDSKDSATDFSPLIIAVIGIFASAFILVTYYTIISKYCRRR-DNDGGRDI 97

Query: 62  SSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICR 121
                     SE+   S+     + + S K+ +Y  G  + +  DCS+CL EF E E  R
Sbjct: 98  DMENSNPNQISESWQGSTTGLDESLIKSIKVHKYKRGDSLVEGTDCSVCLSEFEENESLR 157

Query: 122 MLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNP 162
           +LPKC H FH  CID W  +   CP+CRS +    +  NP
Sbjct: 158 LLPKCSHAFHVPCIDTWFKSHSSCPLCRSNIAAPAIALNP 196

[Close]

BLAST of Bhi08M000525 vs. TrEMBL
Match: tr|A0A1U8PAU9|A0A1U8PAU9_GOSHI (RING-H2 finger protein ATL39-like OS=Gossypium hirsutum OX=3635 GN=LOC107956211 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.4e-15
Identity = 53/155 (34.19%), Postives = 74/155 (47.74%), Query Frame = 0


Query: 8   PAELSVDVLSTLDL-DFLNFAGLSALALMIVYFIFTCYE---RKYWNRNGDIEGGRPPSS 67
           PA   +DV + L+L   L+      + + I+Y I TCYE   R+  +   DIE GR    
Sbjct: 5   PAAAEIDVKTPLNLVGILSVVASFPMTVFIIYIIRTCYEKARRQLRHPTQDIEAGR---- 64

Query: 68  GTVAEPLASEAGDSSSRRRASTAVI-----STKLFQYGEGGLMGKNADCSICLDEFSEGE 127
                         S R+ A T VI                    + DC+ICL+E  EG+
Sbjct: 65  -------------QSMRQPAGTVVIYXXXXXXXXXXXXXXXXXSGSKDCAICLEELKEGD 124

Query: 128 ICRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVH 154
            CRML KC+HV+H  CID+WL    HCP+CR+ ++
Sbjct: 125 RCRMLSKCRHVYHLSCIDRWLLKHSHCPLCRASIY 142

[Close]

BLAST of Bhi08M000525 vs. NCBI nr
Match: XP_004151031.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus] >KGN65721.1 hypothetical protein Csa_1G515990 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 122/153 (79.74%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 11  LSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPPSSGTVAEPL 70
           L VDVLSTLDLDFLNFAGLSALALM +YF+FTC ERKYWNRNGDIEGGR P+  T+ E  
Sbjct: 22  LPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTV-TMDESP 81

Query: 71  ASEAGDSSSRRRASTAVISTKLFQYG-EGGLMGKNADCSICLDEFSEGEICRMLPKCKHV 130
           ASE  DS  RR +S AVIST+LFQYG  GG++GKNADCSICLDEF+EGEICRMLPKCKHV
Sbjct: 82  ASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHV 141

Query: 131 FHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           FHRFCID+WLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 142 FHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of Bhi08M000525 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 1   MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRP 60
           MP       +L V  LS LDLDFLN AGLSALA+M +YFIFTCYERK+WNRNGDIEGG+ 
Sbjct: 12  MPSXXXXXXDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 71

Query: 61  PSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYG-EGGLMGKNADCSICLDEFSEGEI 120
           PS  T+ E  ASE GDSS RR +S AVIST+LFQYG  GG++GKNADCSICLDEF+EGEI
Sbjct: 72  PSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEI 131

Query: 121 CRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           CRMLPKCKHVFHRFCIDQWLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 132 CRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of Bhi08M000525 vs. NCBI nr
Match: XP_022970579.1 (RING-H2 finger protein ATL14-like [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 5.8e-60
Identity = 115/161 (71.43%), Postives = 131/161 (81.37%), Query Frame = 0


Query: 2   PPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPP 61
           PPPPP   ELSVDVLST+DLDFLNFAGL  LA+ I+YFI+T YE KYWNR+ DIEGGR  
Sbjct: 3   PPPPP---ELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSA 62

Query: 62  SSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICR 121
           ++ +V        G S   RR +TAVIST+LFQYGE G+ GKNADCSICLDEF EGEICR
Sbjct: 63  ATASV--------GSSGEDRRWATAVISTRLFQYGERGMEGKNADCSICLDEFVEGEICR 122

Query: 122 MLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           MLPKCKHVFHRFCIDQWLPNERHCP+CRSPVHVR ++++ S
Sbjct: 123 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of Bhi08M000525 vs. NCBI nr
Match: XP_023520573.1 (RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 113/159 (71.07%), Postives = 129/159 (81.13%), Query Frame = 0


Query: 4   PPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPPSS 63
           PPP P ELSVDVLST+DLDFLNFAGL  LA+ I+YFI+T YE KYWNR+ DIEGGR  ++
Sbjct: 3   PPPSP-ELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAAT 62

Query: 64  GTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRML 123
             V        G S   R  +TAVIST+LFQYGE G++GKNADCSICLDEF EGEICRML
Sbjct: 63  AAV--------GSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRML 122

Query: 124 PKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           PKCKHVFHRFCIDQWLPNERHCP+CRSPVHVR ++++ S
Sbjct: 123 PKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of Bhi08M000525 vs. NCBI nr
Match: XP_022964750.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 113/159 (71.07%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 4   PPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPPSS 63
           PPP P ELSVDVLST+DLDFLNFAGL  LA+ I+YFI+T YE KYWNR+ DIEGGR    
Sbjct: 3   PPPSP-ELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR---- 62

Query: 64  GTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRML 123
                   S  G S   R  +TAVIST+LFQYGE G++GKNADCSICLDEF EGEICRML
Sbjct: 63  --------SAVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRML 122

Query: 124 PKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 163
           PKCKHVFHRFCIDQWLPNERHCP+CRSPVHVR ++++ S
Sbjct: 123 PKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 148

The following BLAST results are available for this feature:

BLAST of Bhi08M000525 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LX93\|ATL55_ARATH	7.2e-14	47.89	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
sp\|Q7XLY8\|ATL41_ORYSJ	4.7e-13	42.65	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|Q5XF85\|ATL42_ARATH	8.0e-13	47.06	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
sp\|P0C041\|ATL53_ARATH	8.0e-13	31.10	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
sp\|Q9LF64\|ATL52_ARATH	1.0e-12	41.67	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]

BLAST of Bhi08M000525 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33565.1	2.5e-17	48.53	RING/U-box superfamily protein	[more]
AT5G10380.1	4.0e-15	47.89	RING/U-box superfamily protein	[more]
AT4G28890.1	4.4e-14	47.06	RING/U-box superfamily protein	[more]
AT4G17905.1	4.4e-14	31.10	RING/U-box superfamily protein	[more]
AT5G17600.1	5.8e-14	41.67	RING/U-box superfamily protein	[more]

BLAST of Bhi08M000525 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0H1\|A0A0A0M0H1_CUCSA	1.3e-63	79.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=4 SV=1	[more]
tr\|A0A1S3C5T1\|A0A1S3C5T1_CUCME	1.7e-63	75.46	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
tr\|A0A061DKW1\|A0A061DKW1_THECC	1.5e-16	36.23	RING-H2 finger protein ATL5F, putative OS=Theobroma cacao OX=3641 GN=TCM_001923 ...	[more]
tr\|M5X0D2\|M5X0D2_PRUPE	6.4e-15	33.13	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007682mg PE=4 SV=1	[more]
tr\|A0A1U8PAU9\|A0A1U8PAU9_GOSHI	6.4e-15	34.19	RING-H2 finger protein ATL39-like OS=Gossypium hirsutum OX=3635 GN=LOC107956211 ...	[more]

BLAST of Bhi08M000525 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151031.2	1.9e-63	79.74	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus] >KGN65721.1 hypot...	[more]
XP_008457570.2	2.5e-63	75.46	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]	[more]
XP_022970579.1	5.8e-60	71.43	RING-H2 finger protein ATL14-like [Cucurbita maxima]	[more]
XP_023520573.1	2.2e-59	71.07	RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo]	[more]
XP_022964750.1	1.1e-58	71.07	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000525	Bhi08G000525	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000525.exon1	Bhi08M000525.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000525	cds.Bhi08M000525	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000525	Bhi08M000525-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 2.5E-7 score: 40.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 3.8E-13 score: 49.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.873
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 83..157 e-value: 1.9E-20 score: 73.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..82
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 2..153
None	No IPR available	PANTHER	PTHR14155:SF93	RING-H2 FINGER PROTEIN ATL19-RELATED	coord: 2..153
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 107..149 e-value: 1.38454E-15 score: 66.0961
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 100..155