Bhi08M000513 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08M000513
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	cell division cycle and apoptosis regulator protein 1
Location	chr8 : 19663037 .. 19663278 (+)
Sequence length	242

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAAGAAATGGAATCAACAAAGATACTAAAAGCATTGATAAGCTTGAAAAAGAGCAACACTCTGTGTCAACTAGGCAGACCGACATAGATAAAAAGGAAAAGAGTGACAAAGGGGATAAAGGGAATACATCTGAGGGAAGGGGTAATGCAAGTAGCACAAAACTTGAAAGCAAGGATGCAGAAGAAAGAGGCAAGGAAGCTCAAAATGTTGAGAAACCAGATCAAGGAGAAGTAACTGGTG

mRNA sequence

TCAAAGAAATGGAATCAACAAAGATACTAAAAGCATTGATAAGCTTGAAAAAGAGCAACACTCTGTGTCAACTAGGCAGACCGACATAGATAAAAAGGAAAAGAGTGACAAAGGGGATAAAGGGAATACATCTGAGGGAAGGGGTAATGCAAGTAGCACAAAACTTGAAAGCAAGGATGCAGAAGAAAGAGGCAAGGAAGCTCAAAATGTTGAGAAACCAGATCAAGGAGAAGTAACTGGTG

Coding sequence (CDS)

TCAAAGAAATGGAATCAACAAAGATACTAAAAGCATTGATAAGCTTGAAAAAGAGCAACACTCTGTGTCAACTAGGCAGACCGACATAGATAAAAAGGAAAAGAGTGACAAAGGGGATAAAGGGAATACATCTGAGGGAAGGGGTAATGCAAGTAGCACAAAACTTGAAAGCAAGGATGCAGAAGAAAGAGGCAAGGAAGCTCAAAATGTTGAGAAACCAGATCAAGGAGAAGTAACTGGTG

Protein sequence

QRNGINKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKGDKGNTSEGRGNASSTKLESKDAEERGKEAQNVEKPDQGEVTG

Homology

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BLAST of Bhi08M000513 vs. TrEMBL
Match: tr|A0A0A0KRX1|A0A0A0KRX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469040 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.3e-08
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 20  HSVSTRQTDIDKXXXXXXXXXXXXSEGRGNASSTKLESKDAEERGKEAQNVEKPDQGEVT 79
           H+VS RQ DID+ XXXXXXXXX  SEGRG  SS+KLESKD +ERGKEAQNVEKPDQ EV+
Sbjct: 753 HTVSIRQADIDQKXXXXXXXXXNTSEGRGTGSSSKLESKDGDERGKEAQNVEKPDQ-EVS 812

Query: 80  G 81
           G
Sbjct: 813 G 812

[Close]

BLAST of Bhi08M000513 vs. TrEMBL
Match: tr|A0A1S3CPK5|A0A1S3CPK5_CUCME (cell division cycle and apoptosis regulator protein 1 OS=Cucumis melo OX=3656 GN=LOC103503353 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-05
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 44  SEGRGNASSTKLESKDAEERGKEAQNVEKPDQGEVTG 81
           +EGRGN SS+KLESKDA+ERGKEAQNVEKPDQ EV G
Sbjct: 777 TEGRGNGSSSKLESKDADERGKEAQNVEKPDQ-EVAG 812

[Close]

BLAST of Bhi08M000513 vs. NCBI nr
Match: XP_011655281.1 (PREDICTED: cell division cycle and apoptosis regulator protein 1 [Cucumis sativus] >KGN51162.1 hypothetical protein Csa_5G469040 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 20  HSVSTRQTDIDKXXXXXXXXXXXXSEGRGNASSTKLESKDAEERGKEAQNVEKPDQGEVT 79
           H+VS RQ DID+ XXXXXXXXX  SEGRG  SS+KLESKD +ERGKEAQNVEKPDQ EV+
Sbjct: 753 HTVSIRQADIDQKXXXXXXXXXNTSEGRGTGSSSKLESKDGDERGKEAQNVEKPDQ-EVS 812

Query: 80  G 81
           G
Sbjct: 813 G 812

[Close]

BLAST of Bhi08M000513 vs. NCBI nr
Match: XP_023537121.1 (cell division cycle and apoptosis regulator protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 44  SEGRGNASSTKLESKDAEERGKEAQNVEKPDQGEVTG 81
           SEGRGN SSTKLESKD +ERGKEAQNVEKPDQ EV G
Sbjct: 764 SEGRGNGSSTKLESKDEDERGKEAQNVEKPDQEEVDG 800

[Close]

BLAST of Bhi08M000513 vs. NCBI nr
Match: XP_008465744.1 (PREDICTED: cell division cycle and apoptosis regulator protein 1 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 7.6e-05
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 44  SEGRGNASSTKLESKDAEERGKEAQNVEKPDQGEVTG 81
           +EGRGN SS+KLESKDA+ERGKEAQNVEKPDQ EV G
Sbjct: 777 TEGRGNGSSSKLESKDADERGKEAQNVEKPDQ-EVAG 812

[Close]

BLAST of Bhi08M000513 vs. NCBI nr
Match: XP_022156702.1 (cell division cycle and apoptosis regulator protein 1 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 34/58 (58.62%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 7   KDTKSIDKLEKEQHSVSTRQTDIDKXXXXXXXXXXXXSEGRGNASSTKLESKDAEERG 65
           KD+KS+D  EK Q SV TRQ DIDK            SEGRGN SST LESKD +ERG
Sbjct: 734 KDSKSVDNSEKXQPSVPTRQVDIDK---KGKSDKGSTSEGRGNVSSTTLESKDVDERG 788

The following BLAST results are available for this feature:

BLAST of Bhi08M000513 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08M000513 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08M000513 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRX1\|A0A0A0KRX1_CUCSA	8.3e-08	77.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469040 PE=4 SV=1	[more]
tr\|A0A1S3CPK5\|A0A1S3CPK5_CUCME	5.0e-05	83.78	cell division cycle and apoptosis regulator protein 1 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Bhi08M000513 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655281.1	1.3e-07	77.05	PREDICTED: cell division cycle and apoptosis regulator protein 1 [Cucumis sativu...	[more]
XP_023537121.1	4.0e-06	86.49	cell division cycle and apoptosis regulator protein 1-like [Cucurbita pepo subsp...	[more]
XP_008465744.1	7.6e-05	83.78	PREDICTED: cell division cycle and apoptosis regulator protein 1 [Cucumis melo]	[more]
XP_022156702.1	1.3e-04	58.62	cell division cycle and apoptosis regulator protein 1 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1903508	positive regulation of nucleic acid-templated transcription
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030374	ligand-dependent nuclear receptor transcription coactivator activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000513	Bhi08G000513	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000513.exon1	Bhi08M000513.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000513	cds.Bhi08M000513	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000513	Bhi08M000513-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..72