Bhi08M000427 (mRNA) Wax gourd

Overview
NameBhi08M000427
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr8 : 17120279 .. 17120554 (-)
Sequence length276
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATTCTAGCTGGTTTGGGACCTGAGTATGACTCTACTGTTTCTGTCATCACAGACAAGGATGAATACCCTTCTTTACAAAGGATTTATTCTCAGTTGCTTGCTCAAGAAAATCGTGTTGTGAGACATAGCCTTGTGAATATTGATGGTTCTATCCCTTCAGTCAATCTAACCAAACAAACTCTATCCAAACAACCTTATTCTTCTCCTTTTCAACCCAATAATAATAATGCTGAAGGTACCAGAAGAAGTAAGAATTTAAATGGCAAGTAG

mRNA sequence

ATGCATATTCTAGCTGGTTTGGGACCTGAGTATGACTCTACTGTTTCTGTCATCACAGACAAGGATGAATACCCTTCTTTACAAAGGATTTATTCTCAGTTGCTTGCTCAAGAAAATCGTGTTGTGAGACATAGCCTTGTGAATATTGATGGTTCTATCCCTTCAGTCAATCTAACCAAACAAACTCTATCCAAACAACCTTATTCTTCTCCTTTTCAACCCAATAATAATAATGCTGAAGGTACCAGAAGAAGTAAGAATTTAAATGGCAAGTAG

Coding sequence (CDS)

ATGCATATTCTAGCTGGTTTGGGACCTGAGTATGACTCTACTGTTTCTGTCATCACAGACAAGGATGAATACCCTTCTTTACAAAGGATTTATTCTCAGTTGCTTGCTCAAGAAAATCGTGTTGTGAGACATAGCCTTGTGAATATTGATGGTTCTATCCCTTCAGTCAATCTAACCAAACAAACTCTATCCAAACAACCTTATTCTTCTCCTTTTCAACCCAATAATAATAATGCTGAAGGTACCAGAAGAAGTAAGAATTTAAATGGCAAGTAG

Protein sequence

MHILAGLGPEYDSTVSVITDKDEYPSLQRIYSQLLAQENRVVRHSLVNIDGSIPSVNLTKQTLSKQPYSSPFQPNNNNAEGTRRSKNLNGK
Homology
[Close]
BLAST of Bhi08M000427 vs. TrEMBL
Match: tr|A0A2I4EF20|A0A2I4EF20_9ROSI (uncharacterized protein LOC108989009 OS=Juglans regia OX=51240 GN=LOC108989009 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-05
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 2   HILAGLGPEYDSTVSVITDKDEYPSLQRIYSQLLAQENRVVRHSLVNIDGSIPSVNLTKQ 61
           ++LAGLGPEYDS V++++ +D   +L+ +YS LL  E R+  HS      S P++N++  
Sbjct: 165 YLLAGLGPEYDSLVTIMSARDASLTLEEVYSMLLTCEARIAHHS-----QSTPTMNVSGN 224

Query: 62  TLSKQPYSSPFQPNNNNAEG 82
             + Q   SP++  +N+  G
Sbjct: 225 VATSQQNFSPYRGRSNSNRG 239

[Close]
BLAST of Bhi08M000427 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1   MHILAGLGPEYDSTVSVITDKDEYPSLQRIYSQLLAQENRVVRHSLVNIDGSIPSVNLTK 60
           MHILAGLGPE+D+ +SVIT ++   +LQ + S LL QE R  R +L+N DGS+PSVNLT 
Sbjct: 183 MHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNER-NLINSDGSLPSVNLTL 242

Query: 61  QTLSKQ---PYSSPFQPNNNNAEGTRRSKN 88
              SK+     S  F P+ +N     R  N
Sbjct: 243 NDSSKKNNLHQSKCFNPHQSNYSQRGRGTN 271

[Close]
BLAST of Bhi08M000427 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-08
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 0 

Query: 1   MHILAGLGPEYDSTVSVITDKDEYPSLQRIYSQLLAQENRVVRHSLVNIDGSIPSVNLTK 60
           MHIL GL  E++STVSVI+ + +  +LQ +YS LL+ E R  R+S +N DG++PSVNLT+
Sbjct: 93  MHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERNS-INTDGTLPSVNLTQ 152

Query: 61  QTLS---------KQPYSSPFQPNNNNAEGTRRSKNLNGK 92
           QT +         ++PY    +  N+     RR+ N N +
Sbjct: 153 QTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNR 191

[Close]
BLAST of Bhi08M000427 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-08
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 0 

Query: 1   MHILAGLGPEYDSTVSVITDKDEYPSLQRIYSQLLAQENRVVRHSLVNIDGSIPSVNLTK 60
           MHIL GL  E++STVSVI+ + +  +LQ +YS LL+ E R  R+S +N DG++PSVNLT+
Sbjct: 93  MHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERNS-INTDGTLPSVNLTQ 152

Query: 61  QTLS---------KQPYSSPFQPNNNNAEGTRRSKNLNGK 92
           QT +         ++PY    +  N+     RR+ N N +
Sbjct: 153 QTKNSNSAQSIDGQRPYMQNNRSKNSGNPNFRRNWNSNNR 191

[Close]
BLAST of Bhi08M000427 vs. NCBI nr
Match: XP_018817995.1 (PREDICTED: uncharacterized protein LOC108989009 [Juglans regia])

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 2   HILAGLGPEYDSTVSVITDKDEYPSLQRIYSQLLAQENRVVRHSLVNIDGSIPSVNLTKQ 61
           ++LAGLGPEYDS V++++ +D   +L+ +YS LL  E R+  HS      S P++N++  
Sbjct: 165 YLLAGLGPEYDSLVTIMSARDASLTLEEVYSMLLTCEARIAHHS-----QSTPTMNVSGN 224

Query: 62  TLSKQPYSSPFQPNNNNAEG 82
             + Q   SP++  +N+  G
Sbjct: 225 VATSQQNFSPYRGRSNSNRG 239

The following BLAST results are available for this feature:
BLAST of Bhi08M000427 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi08M000427 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi08M000427 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I4EF20|A0A2I4EF20_9ROSI3.4e-0536.25uncharacterized protein LOC108989009 OS=Juglans regia OX=51240 GN=LOC108989009 P... [more]
BLAST of Bhi08M000427 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154487.12.2e-0847.78uncharacterized protein LOC111021757 [Momordica charantia][more]
XP_022136883.16.4e-0841.00dr1-associated corepressor homolog isoform X2 [Momordica charantia][more]
XP_022136882.16.4e-0841.00dr1-associated corepressor homolog isoform X1 [Momordica charantia][more]
XP_018817995.15.1e-0536.25PREDICTED: uncharacterized protein LOC108989009 [Juglans regia][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi08G000427Bhi08G000427gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi08M000427cds.Bhi08M000427CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi08M000427.exon1Bhi08M000427.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi08M000427Bhi08M000427-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..91