Bhi07M000952 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07M000952
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	serine/threonine-protein kinase STE20-like
Location	chr7 : 35768445 .. 35768714 (-)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTTGGAAGAAGGAGGAGAGAAAGTGATGGTAATCCAAGATGGAAGCAGAAAGTTCAGTTGGAATGCAGCCATGGGAATTGTATGGGTGCTGAGGAACTCTCCATTTAGAAAGGGAGATGAAATAACACTACTAGTTGTTCTTCACCAGGTTAATAATCCTAGTATGTATGCTTTGATGGAAGCTTCAATGTGTAAGCTTTCAATTACACTCTTTAGTTCCCTTCCAATACTTCCTCAAACAATTCAAGGGAAGGCCATTTAA

mRNA sequence

ATGGCAAAGTTGGAAGAAGGAGGAGAGAAAGTGATGGTAATCCAAGATGGAAGCAGAAAGTTCAGTTGGAATGCAGCCATGGGAATTGTATGGGTGCTGAGGAACTCTCCATTTAGAAAGGGAGATGAAATAACACTACTAGTTGTTCTTCACCAGGTTAATAATCCTAGTATGTATGCTTTGATGGAAGCTTCAATGTGTAAGCTTTCAATTACACTCTTTAGTTCCCTTCCAATACTTCCTCAAACAATTCAAGGGAAGGCCATTTAA

Coding sequence (CDS)

ATGGCAAAGTTGGAAGAAGGAGGAGAGAAAGTGATGGTAATCCAAGATGGAAGCAGAAAGTTCAGTTGGAATGCAGCCATGGGAATTGTATGGGTGCTGAGGAACTCTCCATTTAGAAAGGGAGATGAAATAACACTACTAGTTGTTCTTCACCAGGTTAATAATCCTAGTATGTATGCTTTGATGGAAGCTTCAATGTGTAAGCTTTCAATTACACTCTTTAGTTCCCTTCCAATACTTCCTCAAACAATTCAAGGGAAGGCCATTTAA

Protein sequence

MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYALMEASMCKLSITLFSSLPILPQTIQGKAI

Homology

[Close]

BLAST of Bhi07M000952 vs. TrEMBL
Match: tr|A0A1S4DW95|A0A1S4DW95_CUCME (serine/threonine-protein kinase CDG1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488806 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA 60
          MAKLEE GEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA
Sbjct: 1  MAKLEEVGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA 60

Query: 61 LMEASM 67
          LMEASM
Sbjct: 61 LMEASM 66

[Close]

BLAST of Bhi07M000952 vs. TrEMBL
Match: tr|A0A0A0KPP1|A0A0A0KPP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582230 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.9e-23
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 57
          MAKLEEGGEKVM IQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP
Sbjct: 1  MAKLEEGGEKVMAIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 56

[Close]

BLAST of Bhi07M000952 vs. TrEMBL
Match: tr|A0A1S4DX01|A0A1S4DX01_CUCME (serine/threonine-protein kinase CDG1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488806 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 57
          MAKLEE GEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP
Sbjct: 1  MAKLEEVGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 56

[Close]

BLAST of Bhi07M000952 vs. TrEMBL
Match: tr|A0A1D1Y7N1|A0A1D1Y7N1_9ARAE (Proline-rich receptor-like protein kinase PERK3 OS=Anthurium amnicola OX=1678845 GN=PERK3_3 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-04
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 6  EGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYAL 62
          +  ++V+VIQD SR+ S +A   I W L     + GDE+TLL VLHQVNNPS +++
Sbjct: 3  KAAQRVVVIQDASREISLSA---IKWALDGLSLKPGDELTLLGVLHQVNNPSTFSI 55

[Close]

BLAST of Bhi07M000952 vs. TrEMBL
Match: tr|A0A1D1Y880|A0A1D1Y880_9ARAE (Inactive protein kinase SELMODRAFT_444075 OS=Anthurium amnicola OX=1678845 GN=SELMODRAFT_444075_8 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-04
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 6  EGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYAL 62
          +  ++V+VIQD SR+ S +A   I W L     + GDE+TLL VLHQVNNPS +++
Sbjct: 3  KAAQRVVVIQDASREISLSA---IKWALDGLSLKPGDELTLLGVLHQVNNPSTFSI 55

[Close]

BLAST of Bhi07M000952 vs. NCBI nr
Match: XP_011655516.1 (PREDICTED: protein kinase 2A, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA 60
          MAKLEEGGEKVM IQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA
Sbjct: 1  MAKLEEGGEKVMAIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA 60

Query: 61 LMEASM 67
          LMEASM
Sbjct: 61 LMEASM 66

[Close]

BLAST of Bhi07M000952 vs. NCBI nr
Match: XP_016900254.1 (PREDICTED: serine/threonine-protein kinase CDG1 isoform X1 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA 60
          MAKLEE GEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA
Sbjct: 1  MAKLEEVGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNPSMYA 60

Query: 61 LMEASM 67
          LMEASM
Sbjct: 61 LMEASM 66

[Close]

BLAST of Bhi07M000952 vs. NCBI nr
Match: KGN51590.1 (hypothetical protein Csa_5G582230 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 9.0e-23
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 57
          MAKLEEGGEKVM IQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP
Sbjct: 1  MAKLEEGGEKVMAIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 56

[Close]

BLAST of Bhi07M000952 vs. NCBI nr
Match: XP_011655517.1 (PREDICTED: protein kinase 2A, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 9.0e-23
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 57
          MAKLEEGGEKVM IQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP
Sbjct: 1  MAKLEEGGEKVMAIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 56

[Close]

BLAST of Bhi07M000952 vs. NCBI nr
Match: XP_016900255.1 (PREDICTED: serine/threonine-protein kinase CDG1 isoform X2 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-22
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MAKLEEGGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 57
          MAKLEE GEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP
Sbjct: 1  MAKLEEVGEKVMVIQDGSRKFSWNAAMGIVWVLRNSPFRKGDEITLLVVLHQVNNP 56

The following BLAST results are available for this feature:

BLAST of Bhi07M000952 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi07M000952 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi07M000952 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DW95\|A0A1S4DW95_CUCME	1.0e-27	98.48	serine/threonine-protein kinase CDG1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KPP1\|A0A0A0KPP1_CUCSA	5.9e-23	98.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582230 PE=4 SV=1	[more]
tr\|A0A1S4DX01\|A0A1S4DX01_CUCME	2.3e-22	98.21	serine/threonine-protein kinase CDG1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1D1Y7N1\|A0A1D1Y7N1_9ARAE	2.8e-04	48.21	Proline-rich receptor-like protein kinase PERK3 OS=Anthurium amnicola OX=1678845...	[more]
tr\|A0A1D1Y880\|A0A1D1Y880_9ARAE	2.8e-04	48.21	Inactive protein kinase SELMODRAFT_444075 OS=Anthurium amnicola OX=1678845 GN=SE...	[more]

BLAST of Bhi07M000952 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655516.1	4.2e-28	98.48	PREDICTED: protein kinase 2A, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_016900254.1	1.6e-27	98.48	PREDICTED: serine/threonine-protein kinase CDG1 isoform X1 [Cucumis melo]	[more]
KGN51590.1	9.0e-23	98.21	hypothetical protein Csa_5G582230 [Cucumis sativus]	[more]
XP_011655517.1	9.0e-23	98.21	PREDICTED: protein kinase 2A, chloroplastic isoform X2 [Cucumis sativus]	[more]
XP_016900255.1	3.4e-22	98.21	PREDICTED: serine/threonine-protein kinase CDG1 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0003856	3-dehydroquinate synthase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004672	protein kinase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi07G000952	Bhi07G000952	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi07M000952	cds.Bhi07M000952	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi07M000952.exon1	Bhi07M000952.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi07M000952	Bhi07M000952-protein	polypeptide