Bhi07M000289 (mRNA) Wax gourd

NameBhi07M000289
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr7 : 15218952 .. 15219705 (+)
Sequence length754
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCCACCAACCTCCACGACTTCCCTTCACCTACCAAACAACCTTTCTTCATCCTCAAATCTCTCCTCCTTTTTCCCCTAAACATTCTCTTTATTCCCCAAATTTTGTCTTAAAATTTTGATTCAATATGTTCATCCAACCTCTGCCTTGTCATGCTCTCCTCATCCTTAGTTTGTTCTTGATTCTTTCAATCAATGTACAACCCATCCATGGCTTGATCTCCTTCAAGAAGCTCGACGATTCCGTCAACGGGGATGATTCAAGCGTCAAGTGTACACCGTGCACCCGTTATCCACCACCACCACCACCCCCACCGAAGAAACCGCCACTGGCTTACTGCCCTCCGCCACCACCTCCTCCATCATCTTTCATATACATGCTCAGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTTGCCGGTGCCGATCGGAGGAGGATGGCCGTAGAGTTGCCGGTGGTTGCTCTCTTTGGTCTCATTGGGTTTATTGCTTTTTGGTGATATTGATGGAGTTTGATTGATGGAAAGTTGAATAACCATGAGTGAGTTAGAAGGAGATAATAACGTTGAAGCTAAGGTTATAGGTTCAAATTTTCTCTTTTATCAACTTTGTTTTTCGTTTTTCTCTTATTTTCATTTTGTTTTGTGGAAATTTCTAATTCACAAACATTTGTATGGATTATTATGGTCCGATGTCATTGAAAATTTTCAATAAATGTATATAAATTTGGATTATTTCTTTATTTTTTA

mRNA sequence

AAGCCACCAACCTCCACGACTTCCCTTCACCTACCAAACAACCTTTCTTCATCCTCAAATCTCTCCTCCTTTTTCCCCTAAACATTCTCTTTATTCCCCAAATTTTGTCTTAAAATTTTGATTCAATATGTTCATCCAACCTCTGCCTTGTCATGCTCTCCTCATCCTTAGTTTGTTCTTGATTCTTTCAATCAATGTACAACCCATCCATGGCTTGATCTCCTTCAAGAAGCTCGACGATTCCGTCAACGGGGATGATTCAAGCGTCAAGTGTACACCGTGCACCCGTTATCCACCACCACCACCACCCCCACCGAAGAAACCGCCACTGGCTTACTGCCCTCCGCCACCACCTCCTCCATCATCTTTCATATACATGCTCAGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTTGCCGGTGCCGATCGGAGGAGGATGGCCGTAGAGTTGCCGGTGGTTGCTCTCTTTGGTCTCATTGGGTTTATTGCTTTTTGGTGATATTGATGGAGTTTGATTGATGGAAAGTTGAATAACCATGAGTGAGTTAGAAGGAGATAATAACGTTGAAGCTAAGGTTATAGGTTCAAATTTTCTCTTTTATCAACTTTGTTTTTCGTTTTTCTCTTATTTTCATTTTGTTTTGTGGAAATTTCTAATTCACAAACATTTGTATGGATTATTATGGTCCGATGTCATTGAAAATTTTCAATAAATGTATATAAATTTGGATTATTTCTTTATTTTTTA

Coding sequence (CDS)

ATGTTCATCCAACCTCTGCCTTGTCATGCTCTCCTCATCCTTAGTTTGTTCTTGATTCTTTCAATCAATGTACAACCCATCCATGGCTTGATCTCCTTCAAGAAGCTCGACGATTCCGTCAACGGGGATGATTCAAGCGTCAAGTGTACACCGTGCACCCGTTATCCACCACCACCACCACCCCCACCGAAGAAACCGCCACTGGCTTACTGCCCTCCGCCACCACCTCCTCCATCATCTTTCATATACATGCTCAGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTTGCCGGTGCCGATCGGAGGAGGATGGCCGTAGAGTTGCCGGTGGTTGCTCTCTTTGGTCTCATTGGGTTTATTGCTTTTTGGTGA

Protein sequence

MFIQPLPCHALLILSLFLILSINVQPIHGLISFKKLDDSVNGDDSSVKCTPCTRYPPPPPPPPKKPPLAYCPPPPPPPSSFIYMLSPPGNLYPIDQDFAGADRRRMAVELPVVALFGLIGFIAFW
BLAST of Bhi07M000289 vs. TrEMBL
Match: tr|A0A0A0KSV7|A0A0A0KSV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MFIQPLPCHALLILSLFLILSINVQPIHGLISFKKLDDSVNGDDSSVKCTPCTRYXXXXX 60
           M IQP P ++LLIL  FLILSIN+QPIHG IS KKLD+ +   DSSVKCTPCTRY XXXX
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXSPPGNLYPIDQDFAGADRRRMAVELPVVALFGLIG 120
           XXXXXXXXXXXXXXXXXXXXX     PP NLYPI+ DFA ADRR +A+ELPVVA FGLIG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FIA 124
            IA
Sbjct: 121 LIA 123

BLAST of Bhi07M000289 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_5G283490 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MFIQPLPCHALLILSLFLILSINVQPIHGLISFKKLDDSVNGDDSSVKCTPCTRYXXXXX 60
           M IQP P ++LLIL  FLILSIN+QPIHG IS KKLD+ +   DSSVKCTPCTRY XXXX
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXSPPGNLYPIDQDFAGADRRRMAVELPVVALFGLIG 120
           XXXXXXXXXXXXXXXXXXXXX     PP NLYPI+ DFA ADRR +A+ELPVVA FGLIG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FIA 124
            IA
Sbjct: 121 LIA 123

BLAST of Bhi07M000289 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 91/123 (73.98%), Postives = 98/123 (79.67%), Query Frame = 0

Query: 1   MFIQPLPCHALLILSLFL-ILSINVQPIHGLISFKKLDDSVNGDDSSVKCTPCTRYXXXX 60
           M IQ  P +AL I S F+  LSINV   HG +S KKLD+S  GDD SVKCTPCT  XXXX
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXSPPGNLYPIDQDFAGADRRRMAVELPVVALFGLI 120
           XXXXXXXXXXXXXXXXXXXXXXX    PPGNLYPID+DFAGADRRR+AVEL  VALFGLI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFI 123
           GF+
Sbjct: 121 GFL 123

BLAST of Bhi07M000289 vs. NCBI nr
Match: XP_022155381.1 (acrosin-like [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 91/115 (79.13%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 13  ILSLFLILSINVQPIHGLISFKKLDDSVNGDDSSVKCTPCTRY--XXXXXXXXXXXXXXX 72
           IL+L LILSINV  IHGLIS  KLD S  G DS+VKCTPCTRY  XXXXXXXXXXXXXXX
Sbjct: 7   ILNLLLILSINVVTIHGLISSNKLDGSTGG-DSTVKCTPCTRYNXXXXXXXXXXXXXXXX 66

Query: 73  XXXXXXXXXXXXXXXSPPGNLYPIDQDFAGADRRRMAVELPVVALFGLIGFIAFW 126
           XXXXXXXXXXXX    PPGNLYPI QDFAG  RRR+AVELPVVAL GL+GFIA W
Sbjct: 67  XXXXXXXXXXXXYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLGLMGFIAVW 119

BLAST of Bhi07M000289 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 87  PPGNLYPIDQDFAGADRRRMAVELPVVALFGLIGFI 123
           PPGNLYPID+DFAGADRRR+AVEL  VALFGLIGF+
Sbjct: 88  PPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFL 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KSV7|A0A0A0KSV7_CUCSA1.5e-2474.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN50831.12.3e-2474.80hypothetical protein Csa_5G283490 [Cucumis sativus][more]
XP_023546806.11.8e-2173.98formin-like protein 20 [Cucurbita pepo subsp. pepo][more]
XP_022155381.13.8e-1979.13acrosin-like [Momordica charantia][more]
XP_022942055.12.3e-0886.11probable glycosyltransferase 4 [Cucurbita moschata][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi07G000289Bhi07G000289gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi07M000289.utr5p1Bhi07M000289.utr5p1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi07M000289.exon1Bhi07M000289.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi07M000289cds.Bhi07M000289CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi07M000289.utr3p1Bhi07M000289.utr3p1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi07M000289Bhi07M000289-proteinpolypeptide


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..70
NoneNo IPR availablePANTHERPTHR35094FAMILY NOT NAMEDcoord: 9..125
NoneNo IPR availablePANTHERPTHR35094:SF1SUBFAMILY NOT NAMEDcoord: 9..125