Bhi05M001474 (mRNA) Wax gourd

Overview
NameBhi05M001474
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr5 : 55548933 .. 55549922 (-)
Sequence length990
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAATTTTAATTTGAATATATGCGTATATAATTTTATTTTAGATTTAAAGAAATTTTCAAATGTTAATAAAAACTTAATATATATATATGTGTGTGTTTCTATTATTTATCTTATGAATTATTTTTCACGACAAAACGTGTATAAAAAAAAGATCAATACATGATTAGTTATATTGCAAAAGTGTTTATTTCTAAGAGAGTGCATATTCAATATACTTACCTACTTCAATGCAAAATTTAGATGTGTTTCAATGAAGGAGCTAAAGACAACTCATTACTAGTGTTATTTGTTGTAGCTACCCAAACTAAGTTTTGTTATGTAGTTGTGGCTAATTCTTGTTATATAAATGGAAGGCTTGTGCCTATAAAAGGATATGTGTGCTTTTAGATGATCATCAAATAAATCCTATTTCTTGCAAAACTTCCTTCTCTTATTAGAAAAAACTTCATTGTTGTGTTATTTATAAGCTCTCGGACGAAGTTCGCTCTCTCTTGCATAAGGTGTCGAACCCCTAACTAGTAGGCACACTAAACAAGAGTTTGAATCGATTCGTTTGGTTTCATATATGAAAAGAGCAAATTGAAAGAAATACTTTTAGAAATTAGAAACCGATCGGTTTGGTTTCGTTTGATTCTTCTTCTTTTTCATCATATGGCTTGTTTTCTTGTCAAGTGTAGGGTATCACATCAAGTGCCAAAAATTCGTAAAGATGGTAGTAATAGAAAGGCAAGGAAAAGCCAAAGAGATGGTATTGTTGTTGGCGAGGTGCCTACAACGATGAAGAACAAGAAATGGCATCGACAAAGACAGGTAGGCGGTAAAGAGCGAAAAATGGTGTCGTCGTCAAGATTGCGACGATCACAAAGAGGGAATGAGTTGGGCGGCTGGCTTGCAGCCTGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAGAGATGAAATTAAAGAGTTGGAGAAGGCCTCCAAAGGCTAAAGAAAAATTGAAAAAGCC

mRNA sequence

ATAAAATTTTAATTTGAATATATGCGTATATAATTTTATTTTAGATTTAAAGAAATTTTCAAATGTTAATAAAAACTTAATATATATATATGTGTGTGTTTCTATTATTTATCTTATGAATTATTTTTCACGACAAAACGTGTATAAAAAAAAGATCAATACATGATTAGTTATATTGCAAAAGTGTTTATTTCTAAGAGAGTGCATATTCAATATACTTACCTACTTCAATGCAAAATTTAGATGTGTTTCAATGAAGGAGCTAAAGACAACTCATTACTAGTGTTATTTGTTGTAGCTACCCAAACTAAGTTTTGTTATGTAGTTGTGGCTAATTCTTGTTATATAAATGGAAGGCTTGTGCCTATAAAAGGATATGTGTGCTTTTAGATGATCATCAAATAAATCCTATTTCTTGCAAAACTTCCTTCTCTTATTAGAAAAAACTTCATTGTTGTGTTATTTATAAGCTCTCGGACGAAGTTCGCTCTCTCTTGCATAAGGTGTCGAACCCCTAACTAGTAGGCACACTAAACAAGAGTTTGAATCGATTCGTTTGGTTTCATATATGAAAAGAGCAAATTGAAAGAAATACTTTTAGAAATTAGAAACCGATCGGTTTGGTTTCGTTTGATTCTTCTTCTTTTTCATCATATGGCTTGTTTTCTTGTCAAGTGTAGGGTATCACATCAAGTGCCAAAAATTCGTAAAGATGGTAGTAATAGAAAGGCAAGGAAAAGCCAAAGAGATGGTATTGTTGTTGGCGAGGTGCCTACAACGATGAAGAACAAGAAATGGCATCGACAAAGACAGGTAGGCGGTAAAGAGCGAAAAATGGTGTCGTCGTCAAGATTGCGACGATCACAAAGAGGGAATGAGTTGGGCGGCTGGCTTGCAGCCTGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAGAGATGAAATTAAAGAGTTGGAGAAGGCCTCCAAAGGCTAAAGAAAAATTGAAAAAGCC

Coding sequence (CDS)

ATGGCTTGTTTTCTTGTCAAGTGTAGGGTATCACATCAAGTGCCAAAAATTCGTAAAGATGGTAGTAATAGAAAGGCAAGGAAAAGCCAAAGAGATGGTATTGTTGTTGGCGAGGTGCCTACAACGATGAAGAACAAGAAATGGCATCGACAAAGACAGGTAGGCGGTAAAGAGCGAAAAATGGTGTCGTCGTCAAGATTGCGACGATCACAAAGAGGGAATGAGTTGGGCGGCTGGCTTGCAGCCTGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAGAGATGAAATTAAAGAGTTGGAGAAGGCCTCCAAAGGCTAA

Protein sequence

MACFLVKCRVSHQVPKIRKDGSNRKARKSQRDGIVVGEVPTTMKNKKWHRQRQVGGKERKMVSSSRLRRSQRGNELGGWLAAWLEEAEGERERDEIKELEKASKG
Homology
[Close]
BLAST of Bhi05M001474 vs. TrEMBL
Match: tr|A0A0A0K1A5|A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.8e-22
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 1   MACFLVKCRVSHQVPKIRKDGSNRKARKSQR-DGIVVGEVPTTMK-NKKWHRQRQVGGKE 60
           M CFL KC   +QV +IR+DG NRK RK +R D IV+GE P TMK ++K H  R+V  KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGH--RRVRSKE 60

Query: 61  RKMV-SSSRLRRSQ-RGNELGGWLAAWLEEAEGERERDEIKELEKASK 105
           RKM+ SSSRL+RSQ    ELGGWLAAWLEEAEGERE+DE+KELEK  K
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

[Close]
BLAST of Bhi05M001474 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 1   MACFLVKCRVSHQVPKIRKDGSNRKARKSQR-DGIVVGEVPTTMK-NKKWHRQRQVGGKE 60
           M CFL KC   +QV +IR+DG NRK RK +R D IV+GE P TMK ++K H  R+V  KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGH--RRVRSKE 60

Query: 61  RKMV-SSSRLRRSQ-RGNELGGWLAAWLEEAEGERERDEIKELEKASK 105
           RKM+ SSSRL+RSQ    ELGGWLAAWLEEAEGERE+DE+KELEK  K
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

The following BLAST results are available for this feature:
BLAST of Bhi05M001474 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi05M001474 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi05M001474 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K1A5|A0A0A0K1A5_CUCSA7.8e-2264.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of Bhi05M001474 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43248.11.2e-2164.81hypothetical protein Csa_7G011880 [Cucumis sativus][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi05G001474Bhi05G001474gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi05M001474.utr3p1Bhi05M001474.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi05M001474cds.Bhi05M001474CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi05M001474.exon1Bhi05M001474.exon1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi05M001474.utr5p1Bhi05M001474.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi05M001474Bhi05M001474-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..70