Bhi05M001421 (mRNA) Wax gourd

Overview
NameBhi05M001421
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr5 : 54073440 .. 54074006 (+)
Sequence length447
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAAGAGATGAAGCGGCAGAACGTCGTTGTTTCACTCTCAAACAAAGTCTCATTTGGATTACGACCAGTGGAAAAGAGATAGCTGTAGATTATCCTCCTATGGAAGAATCCTATTTTCCTCACTTGGTAGTCTCAGCTATCAAGATGGTATGCTCTTCGTACAAAATCATCGATGAAGAAAAGGTCTCGAAAGTTGGAGTACATGAAATTAGAAACATCTAACATCAACTGAATTATTCAAACAAGATGTTAGTAACCTTCTCTCAGTCAATTGAGAAAATAAAGGATCAAAAGGCTGCCCCAAGATCAAGCCTTAAGGGCATACCAAAGATTGATCCAAACCGACCAATTTTCCAACCAAATTCCTTTCCCATTGGAGACCTGAAAGAAAATCCAGAGGAACTTCTGGCTGAGATTAATAAAAAAATATCAGTATTCAAGATTGACAAAGGAGAAGAAAATTCTTCAAAGAAGATTGAGGTCTCCAAAGCTGTTAATATAATAAGAGAGTCAAAAGGGACTTCTGCATCTTACAAAATTCCCTCCTGTGGTCTCTTATAG

mRNA sequence

ATGAAAGAAAGAGATGAAGCGGCAGAACGTCGTTGTTTCACTCTCAAACAAAGTCTCATTTGGATTACGACCAGTGGAAAAGAGATAGCTGTAGATTATCCTCCTATGGAAGAATCCTATTTTCCTCACTTGGTAGTCTCAGCTATCAAGATGTCAATTGAGAAAATAAAGGATCAAAAGGCTGCCCCAAGATCAAGCCTTAAGGGCATACCAAAGATTGATCCAAACCGACCAATTTTCCAACCAAATTCCTTTCCCATTGGAGACCTGAAAGAAAATCCAGAGGAACTTCTGGCTGAGATTAATAAAAAAATATCAGTATTCAAGATTGACAAAGGAGAAGAAAATTCTTCAAAGAAGATTGAGGTCTCCAAAGCTGTTAATATAATAAGAGAGTCAAAAGGGACTTCTGCATCTTACAAAATTCCCTCCTGTGGTCTCTTATAG

Coding sequence (CDS)

ATGAAAGAAAGAGATGAAGCGGCAGAACGTCGTTGTTTCACTCTCAAACAAAGTCTCATTTGGATTACGACCAGTGGAAAAGAGATAGCTGTAGATTATCCTCCTATGGAAGAATCCTATTTTCCTCACTTGGTAGTCTCAGCTATCAAGATGTCAATTGAGAAAATAAAGGATCAAAAGGCTGCCCCAAGATCAAGCCTTAAGGGCATACCAAAGATTGATCCAAACCGACCAATTTTCCAACCAAATTCCTTTCCCATTGGAGACCTGAAAGAAAATCCAGAGGAACTTCTGGCTGAGATTAATAAAAAAATATCAGTATTCAAGATTGACAAAGGAGAAGAAAATTCTTCAAAGAAGATTGAGGTCTCCAAAGCTGTTAATATAATAAGAGAGTCAAAAGGGACTTCTGCATCTTACAAAATTCCCTCCTGTGGTCTCTTATAG

Protein sequence

MKERDEAAERRCFTLKQSLIWITTSGKEIAVDYPPMEESYFPHLVVSAIKMSIEKIKDQKAAPRSSLKGIPKIDPNRPIFQPNSFPIGDLKENPEELLAEINKKISVFKIDKGEENSSKKIEVSKAVNIIRESKGTSASYKIPSCGLL
Homology
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BLAST of Bhi05M001421 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 34/90 (37.78%), Postives = 63/90 (70.00%), Query Frame = 0 

Query: 41  FPHLVVSAIKMSIEKIKDQKAAPRSSLKGIPKIDPNRPIFQPNSFPIGDLKENPEELLAE 100
           + + ++S +  ++E+I++       ++  IP +DP +PIFQPNSF IG LKE+P +L A+
Sbjct: 31  YSNKILSEVSKAVERIEN---LVLPTVSKIPPVDPRQPIFQPNSFKIGPLKEDPSDLFAK 90

Query: 101 INKKISVFKIDKGEENSSKKIEVSKAVNII 131
           IN+++S   ++K   +SS+K EV+K++N++
Sbjct: 91  INRRLSSLSLNK--RDSSQKNEVAKSINVV 115

The following BLAST results are available for this feature:
BLAST of Bhi05M001421 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi05M001421 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi05M001421 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi05M001421 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151716.12.1e-0837.78uncharacterized protein LOC111019629 [Momordica charantia][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi05G001421Bhi05G001421gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi05M001421.exon1Bhi05M001421.exon1exon
Bhi05M001421.exon2Bhi05M001421.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi05M001421cds.Bhi05M001421CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi05M001421Bhi05M001421-proteinpolypeptide