Bhi05M001332 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05M001332
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr5 : 51989376 .. 51989927 (+)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGCTTGCAGCGGCAACTCCGCCTCGTCTAGCGGCAGCCGATCATACACCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGCCCTGCCCTTGCCCGCCGGACAAATAAATCGTCAGCCCGCCGGCACCCGGCGGCGCAGGCGGCGGCAACGCTGTACCGGTTAGAGACACAATCTCAAACGTTCCATGAAGCGTCATAACAGTCCCCGACGGCGCCCCCGGCTGGCGCAAGTTGACGTTTGTGACGGCGCCGGTGCCGGCGAGAATGCAAACACCGTGACGACGGCGCGTGGCGTAATTCGAGACTGATTCTACCACATCGAAGCCGGCGGAGACCTCCAGCACGTGCGATCTCAGAGCATTGGGGCTGTCACGTGTTACGATCACCGGCGGTTTTGGCTTGTTCTTGGAGCCGGCAGGGCGACCTCGAGAGCGGCGCGTGGATGAACCGCCACTGGTGGGGGTGGTTGAATCGGCCGGATTGAGATTTTTCTGATGATTTTCCGGCGAGTTGTTGGGATCGGCGAGATGGGTTTGTGA

mRNA sequence

ATGGCTGAGCTTGCAGCGGCAACTCCGCCTCGTCTAGCGGCAGCCGATCATACACCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGCCCTGCCCTTGCCCGCCGGACAAATAAATCGTCAGCCCGCCGGCACCCGGCGGCGCAGGCGGCGGCAACGCTGTACCGTTGACGTTTGTGACGGCGCCGGTGCCGGCGAGAATGCAAACACCACTGATTCTACCACATCGAAGCCGGCGGAGACCTCCAGCACGTGCGATCTCAGAGCATTGGGGCTGTCACGTGTTACGATCACCGGCGGTTTTGGCTTGTTCTTGGAGCCGGCAGGGCGACCTCGAGAGCGGCGCGTGGATGAACCGCCACTGATTTTTCTGATGATTTTCCGGCGAGTTGTTGGGATCGGCGAGATGGGTTTGTGA

Coding sequence (CDS)

ATGGCTGAGCTTGCAGCGGCAACTCCGCCTCGTCTAGCGGCAGCCGATCATACACCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGCCCTGCCCTTGCCCGCCGGACAAATAAATCGTCAGCCCGCCGGCACCCGGCGGCGCAGGCGGCGGCAACGCTGTACCGTTGACGTTTGTGACGGCGCCGGTGCCGGCGAGAATGCAAACACCACTGATTCTACCACATCGAAGCCGGCGGAGACCTCCAGCACGTGCGATCTCAGAGCATTGGGGCTGTCACGTGTTACGATCACCGGCGGTTTTGGCTTGTTCTTGGAGCCGGCAGGGCGACCTCGAGAGCGGCGCGTGGATGAACCGCCACTGATTTTTCTGATGATTTTCCGGCGAGTTGTTGGGATCGGCGAGATGGGTTTGTGA

Protein sequence

MAELAAATPPRLAAADHTPVSYTHLDVYKRQALPLPAGQINRQPAGTRRRRRRQRCTVDVCDGAGAGENANTTDSTTSKPAETSSTCDLRALGLSRVTITGGFGLFLEPAGRPRERRVDEPPLIFLMIFRRVVGIGEMGL

Homology

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BLAST of Bhi05M001332 vs. TrEMBL
Match: tr|A0A0A9S0X7|A0A0A9S0X7_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 75  STTSKPAETSSTCDLRALGLSRVTITGGFGLFLEPAGRPRERRVDEPP 123
           ST S P   SST +   LGLSRVT TGGFGLFL+P G PR RR   PP
Sbjct: 93  STMSAPLAISSTWERITLGLSRVTTTGGFGLFLDPGGLPRGRRPAPPP 140

[Close]

BLAST of Bhi05M001332 vs. TrEMBL
Match: tr|A0A0A9F391|A0A0A9F391_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 75  STTSKPAETSSTCDLRALGLSRVTITGGFGLFLEPAGRPRERRVDEPP 123
           ST S P   SST +   LGLSRVT TGGFGLFL+P G PR RR   PP
Sbjct: 93  STMSAPLAISSTWERITLGLSRVTTTGGFGLFLDPGGLPRGRRPAPPP 140

[Close]

BLAST of Bhi05M001332 vs. TrEMBL
Match: tr|A0A0A9FWG2|A0A0A9FWG2_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 75  STTSKPAETSSTCDLRALGLSRVTITGGFGLFLEPAGRPR 115
           STTS PA TS TC+  ALGLSRV + GG GLFL+P+G PR
Sbjct: 97  STTSAPAATSRTCEWSALGLSRVIMMGGLGLFLDPSGLPR 136

[Close]

BLAST of Bhi05M001332 vs. TrEMBL
Match: tr|A0A0S3RB27|A0A0S3RB27_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G017000 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 75  STTSKPAETSSTCDLRALGLSRVTIT-GGFGLFLEPAGRPRERR 118
           S TS P E SSTC+ RA  LS VT+  GG GLFL+P  RPR RR
Sbjct: 19  SITSAPREISSTCECRAFALSHVTMMGGGLGLFLDPGSRPRGRR 62

The following BLAST results are available for this feature:

BLAST of Bhi05M001332 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05M001332 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05M001332 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A9S0X7\|A0A0A9S0X7_ARUDO	1.4e-05	62.50	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
tr\|A0A0A9F391\|A0A0A9F391_ARUDO	1.4e-05	62.50	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
tr\|A0A0A9FWG2\|A0A0A9FWG2_ARUDO	3.9e-05	67.50	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
tr\|A0A0S3RB27\|A0A0S3RB27_PHAAN	9.7e-04	61.36	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 G...	[more]

BLAST of Bhi05M001332 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi05G001332	Bhi05G001332	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi05M001332.exon1	Bhi05M001332.exon1	exon
Bhi05M001332.exon2	Bhi05M001332.exon2	exon
Bhi05M001332.exon3	Bhi05M001332.exon3	exon
Bhi05M001332.exon4	Bhi05M001332.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi05M001332	cds.Bhi05M001332	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi05M001332	Bhi05M001332-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..85