Bhi04M001138 (mRNA) Wax gourd

Overview
NameBhi04M001138
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr4 : 36116654 .. 36116824 (+)
Sequence length171
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGTAGTCGGGCAAGTATGGCCCCATCGTCTAATGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATGATTATCAATAAGCTTGGAATTGATTCTTCCCGGGTCGATGCCCGAGCG

mRNA sequence

ATGACTGGTAGTCGGGCAAGTATGGCCCCATCGTCTAATGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATGATTATCAATAAGCTTGGAATTGATTCTTCCCGGGTCGATGCCCGAGCG

Coding sequence (CDS)

ATGACTGGTAGTCGGGCAAGTATGGCCCCATCGTCTAATGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATGATTATCAATAAGCTTGGAATTGATTCTTCCCGGGTCGATGCCCGAGCG

Protein sequence

MTGSRASMAPSSNGSGHLSFKEAAGIRLPLGVGYYERKLIMIINKLGIDSSRVDARA
Homology
[Close]
BLAST of Bhi04M001138 vs. TrEMBL
Match: tr|A0A1D8BEZ5|A0A1D8BEZ5_CYCPA (Uncharacterized protein OS=Cycas panzhihuaensis OX=123604 GN=orf63 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.8e-04
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 11 SSNGSGHLSFKEAAGIRLPLGVGY--YERKLIMIINKLGIDSSRVDAR 57
          SS+G GHLSFKEAAGIRLPLGV +  + R   ++   L I  S VDAR
Sbjct: 8  SSSGPGHLSFKEAAGIRLPLGVLWESFSRNTYLVFQTLSIHCSWVDAR 55

[Close]
BLAST of Bhi04M001138 vs. TrEMBL
Match: tr|L7NNR2|L7NNR2_CYCRE (Hypothetical_protein OS=Cycas revoluta OX=3396 GN=orf63 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.8e-04
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 11 SSNGSGHLSFKEAAGIRLPLGVGY--YERKLIMIINKLGIDSSRVDAR 57
          SS+G GHLSFKEAAGIRLPLGV +  + R   ++   L I  S VDAR
Sbjct: 8  SSSGPGHLSFKEAAGIRLPLGVLWESFSRNTYLVFQTLSIHCSWVDAR 55

[Close]
BLAST of Bhi04M001138 vs. TrEMBL
Match: tr|A6H5G3|A6H5G3_CYCTA (Uncharacterized protein OS=Cycas taitungensis OX=54799 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.8e-04
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 11 SSNGSGHLSFKEAAGIRLPLGVGY--YERKLIMIINKLGIDSSRVDAR 57
          SS+G GHLSFKEAAGIRLPLGV +  + R   ++   L I  S VDAR
Sbjct: 8  SSSGPGHLSFKEAAGIRLPLGVLWESFSRNTYLVFQTLSIHCSWVDAR 55

The following BLAST results are available for this feature:
BLAST of Bhi04M001138 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04M001138 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04M001138 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1D8BEZ5|A0A1D8BEZ5_CYCPA8.8e-0458.33Uncharacterized protein OS=Cycas panzhihuaensis OX=123604 GN=orf63 PE=4 SV=1[more]
tr|L7NNR2|L7NNR2_CYCRE8.8e-0458.33Hypothetical_protein OS=Cycas revoluta OX=3396 GN=orf63 PE=4 SV=1[more]
tr|A6H5G3|A6H5G3_CYCTA8.8e-0458.33Uncharacterized protein OS=Cycas taitungensis OX=54799 PE=4 SV=1[more]
BLAST of Bhi04M001138 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi04G001138Bhi04G001138gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi04M001138.exon1Bhi04M001138.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi04M001138cds.Bhi04M001138CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi04M001138Bhi04M001138-proteinpolypeptide