Bhi04M000597 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04M000597
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Transmembrane protein
Location	chr4 : 17227606 .. 17228161 (+)
Sequence length	405

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACCGAACCGAACGGATAATCACTTGTAAAGGTAAAATCCGCCGTCTTGAGCCAAGAAAAGAGCTGGTAGGGCCGTCGACGGGGATTCATTGCGTGGCTGCCTTCGTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTACATCTTTTGAGCATTCTCTTTCTCAGTGGGATTACATCGATCTATTCATTCTACGCCCGATTTTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTATTTTGTTCTTCTTTCCTTCGATTATTTTGTGTAATTCCTGTGTTTCTGATTTCTATTTCTGCTTACGTTTTCAAGTTTGAAATTCGATTTCTATTTCTGTAATATTTATTCGATCCTGCGTTCACTATTAATTGGTATGGTTACGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCACCAAGCCGAAGCCTCCGACGCGCCGACTGTCGAAGTTTTATGATAATCTGAATTCCCAAACTTCAGCTTCTGGCTG

mRNA sequence

CGACCGAACCGAACGGATAATCACTTGTAAAGGTAAAATCCGCCGTCTTGAGCCAAGAAAAGAGCTGGTAGGGCCGTCGACGGGGATTCATTGCGTGGCTGCCTTCGTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTACATCTTTTGAGCATTCTCTTTCTCAGTGGGATTACATCGATCTATTCATTCTACGCCCGATTTTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCACCAAGCCGAAGCCTCCGACGCGCCGACTGTCGAAGTTTTATGATAATCTGAATTCCCAAACTTCAGCTTCTGGCTG

Coding sequence (CDS)

CGACCGAACCGAACGGATAATCACTTGTAAAGGTAAAATCCGCCGTCTTGAGCCAAGAAAAGAGCTGGTAGGGCCGTCGACGGGGATTCATTGCGTGGCTGCCTTCGTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTACATCTTTTGAGCATTCTCTTTCTCAGTGGGATTACATCGATCTATTCATTCTACGCCCGATTTTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCACCAAGCCGAAGCCTCCGACGCGCCGACTGTCGAAGTTTTATGATAATCTGAATTCCCAAACTTCAGCTTCTGGCTG

Protein sequence

DRTERIITCKGKIRRLEPRKELVGPSTGIHCVAAFVCNRALLMESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG

Homology

[Close]

BLAST of Bhi04M000597 vs. TAIR10
Match: AT1G36380.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 66  FILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKPTKPKPPTR-RLSKFYD 125
           F++RP+ A+ F    I+L WFLAWKLVL HVPLVQEIFGLRKK   PKP +R R++KFY 
Sbjct: 15  FLIRPLLAISFVICFIALWWFLAWKLVLSHVPLVQEIFGLRKKTFIPKPESRGRIAKFYK 74

Query: 126 NLNSQ 130
           +++SQ
Sbjct: 75  SISSQ 79

[Close]

BLAST of Bhi04M000597 vs. TrEMBL
Match: tr|A0A1S3BCI8|A0A1S3BCI8_CUCME (uncharacterized protein LOC103488423 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488423 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF SFE+SLS WDY+DL+ILRPI A++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYD+LNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. TrEMBL
Match: tr|A0A1S3BC25|A0A1S3BC25_CUCME (uncharacterized protein LOC103488423 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488423 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF SFE+SLS WDY+DL+ILRPI A++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYD+LNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. TrEMBL
Match: tr|A0A1S3BDD8|A0A1S3BDD8_CUCME (uncharacterized protein LOC103488423 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488423 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF SFE+SLS WDY+DL+ILRPI A++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYD+LNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. TrEMBL
Match: tr|A0A0A0KH75|A0A0A0KH75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399720 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.3e-37
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF+SFE+SLS WDY++L+ILRPI A++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFSSFEYSLSHWDYLNLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYD+LNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. TrEMBL
Match: tr|A0A2I4DYK4|A0A2I4DYK4_9ROSI (uncharacterized protein LOC108984653 isoform X2 OS=Juglans regia OX=51240 GN=LOC108984653 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.4e-28
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSS  S ++SLS WDY+ LF+LRP+ A+VF  SLIS+GW+LAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSSYS-KYSLSPWDYLTLFLLRPVLAIVFVLSLISIGWWLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSAS 134
           FGLRKKP KPKPPTRRLSK Y ++N+Q S+S
Sbjct: 61  FGLRKKPFKPKPPTRRLSKIYSSMNAQNSSS 90

[Close]

BLAST of Bhi04M000597 vs. NCBI nr
Match: XP_023545613.1 (uncharacterized protein LOC111804995 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545614.1 uncharacterized protein LOC111804995 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF+SFE+SLSQWDY++LFILRPI AVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFSSFENSLSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKK  KPKPPTRRLSKFY+NL+SQTSASG
Sbjct: 61  FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. NCBI nr
Match: XP_022997299.1 (uncharacterized protein LOC111492244 isoform X2 [Cucurbita maxima] >XP_022997300.1 uncharacterized protein LOC111492244 isoform X3 [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF+SFE+SLSQWDY+ LFILRPI AVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKK  KPKPPTRRLSKFY+NL+SQTSASG
Sbjct: 61  FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. NCBI nr
Match: XP_022997298.1 (uncharacterized protein LOC111492244 isoform X1 [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF+SFE+SLSQWDY+ LFILRPI AVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKK  KPKPPTRRLSKFY+NL+SQTSASG
Sbjct: 61  FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. NCBI nr
Match: XP_008445365.1 (PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 5.7e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF SFE+SLS WDY+DL+ILRPI A++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYD+LNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Bhi04M000597 vs. NCBI nr
Match: XP_008445367.1 (PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 5.7e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 43  MESSSSSFTSFEHSLSQWDYIDLFILRPIFAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF SFE+SLS WDY+DL+ILRPI A++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPTKPKPPTRRLSKFYDNLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYD+LNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

The following BLAST results are available for this feature:

BLAST of Bhi04M000597 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04M000597 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36380.1	1.1e-15	61.54	unknown protein	[more]

BLAST of Bhi04M000597 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCI8\|A0A1S3BCI8_CUCME	3.7e-37	88.04	uncharacterized protein LOC103488423 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BC25\|A0A1S3BC25_CUCME	3.7e-37	88.04	uncharacterized protein LOC103488423 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BDD8\|A0A1S3BDD8_CUCME	3.7e-37	88.04	uncharacterized protein LOC103488423 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KH75\|A0A0A0KH75_CUCSA	8.3e-37	86.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399720 PE=4 SV=1	[more]
tr\|A0A2I4DYK4\|A0A2I4DYK4_9ROSI	5.4e-28	73.63	uncharacterized protein LOC108984653 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Bhi04M000597 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545613.1	2.5e-37	90.22	uncharacterized protein LOC111804995 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022997299.1	3.3e-37	90.22	uncharacterized protein LOC111492244 isoform X2 [Cucurbita maxima] >XP_022997300...	[more]
XP_022997298.1	3.3e-37	90.22	uncharacterized protein LOC111492244 isoform X1 [Cucurbita maxima]	[more]
XP_008445365.1	5.7e-37	88.04	PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo]	[more]
XP_008445367.1	5.7e-37	88.04	PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR031851	DUF4750

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G000597	Bhi04G000597	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000597.exon1	Bhi04M000597.exon1	exon
Bhi04M000597.exon2	Bhi04M000597.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M000597	cds.Bhi04M000597	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M000597	Bhi04M000597-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031851	Protein of unknown function DUF4750	PFAM	PF15938	DUF4750	coord: 60..112 e-value: 7.3E-25 score: 86.3
None	No IPR available	PANTHER	PTHR37192	FAMILY NOT NAMED	coord: 54..133