Bhi04M000473 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04M000473
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr4 : 13218542 .. 13219091 (-)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATAGTAGCATCGACTTTTGTGTATGAGACAAACGATCCAAATGAAATACTACATGACATGCCAACTGAAGGAGATATTGTCAAAGTTATAATAGAATTGGCAACGACGAAAAACCATTTGTTACCATATCCAATTGATGAAAAAGTTGTAGGAGTCGAAGATGTAGTTGGATACGAAGTTGCATGGCCTCGTGAGTTTGTTATCTATGCAAAGGCTGTTAAGGTAAATATTTAAACTTAATTATTTTGATGTTAGAAGAAGTTAACTTTACGTATATGATTTTTTTTTCTTTTTTGTGTGATAGTTGTCTCATCCCAAAGAGAAAAGTGTATCTTTTGACATTGAATTATCAACCTTACCGGAATCATTAAGACCATTATTTAAGTATGCAAAATTAGAGATTCCTGGTGGTTCAATAAAGGTGCAATTGTCAAAAGATGTATTTGGAGTGAGACTGGATTTTTTCATTATGGATGACGATATCTTTCATTTTTGCATGATGGTCGAAATTGCAGTTAGCAACATCATACTTTATATGGGGTAA

mRNA sequence

ATGATGATAGTAGCATCGACTTTTGTGTATGAGACAAACGATCCAAATGAAATACTACATGACATGCCAACTGAAGGAGATATTGTCAAAGTTATAATAGAATTGGCAACGACGAAAAACCATTTGTTACCATATCCAATTGATGAAAAAGTTGTAGGAGTCGAAGATGTAGTTGGATACGAAGTTGCATGGCCTCGTGAGTTTGTTATCTATGCAAAGGCTGTTAAGTTGTCTCATCCCAAAGAGAAAAGTGTATCTTTTGACATTGAATTATCAACCTTACCGGAATCATTAAGACCATTATTTAAGTATGCAAAATTAGAGATTCCTGGTGGTTCAATAAAGGTGCAATTGTCAAAAGATGTATTTGGAGTGAGACTGGATTTTTTCATTATGGATGACGATATCTTTCATTTTTGCATGATGGTCGAAATTGCAGTTAGCAACATCATACTTTATATGGGGTAA

Coding sequence (CDS)

ATGATGATAGTAGCATCGACTTTTGTGTATGAGACAAACGATCCAAATGAAATACTACATGACATGCCAACTGAAGGAGATATTGTCAAAGTTATAATAGAATTGGCAACGACGAAAAACCATTTGTTACCATATCCAATTGATGAAAAAGTTGTAGGAGTCGAAGATGTAGTTGGATACGAAGTTGCATGGCCTCGTGAGTTTGTTATCTATGCAAAGGCTGTTAAGTTGTCTCATCCCAAAGAGAAAAGTGTATCTTTTGACATTGAATTATCAACCTTACCGGAATCATTAAGACCATTATTTAAGTATGCAAAATTAGAGATTCCTGGTGGTTCAATAAAGGTGCAATTGTCAAAAGATGTATTTGGAGTGAGACTGGATTTTTTCATTATGGATGACGATATCTTTCATTTTTGCATGATGGTCGAAATTGCAGTTAGCAACATCATACTTTATATGGGGTAA

Protein sequence

MMIVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEVAWPREFVIYAKAVKLSHPKEKSVSFDIELSTLPESLRPLFKYAKLEIPGGSIKVQLSKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYMG

Homology

[Close]

BLAST of Bhi04M000473 vs. TrEMBL
Match: tr|A0A251N814|A0A251N814_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           IVAS  + E N PN+++H++P     ++V +  A   +  LP P+      V D +G +V
Sbjct: 56  IVASGTIVEINVPNQLVHNVPLGEGSIRVAVNCALKGDSPLPIPVKGVFETVGDALGSQV 115

Query: 63  AWPREFVIYAKAVKLSHPKEK--SVSFDIELSTLPESLRPLFKYA-KLEIPGGSIKVQLS 122
           AWP++ +++   VK    KEK     F     T+P+S   L+ YA ++   G +I     
Sbjct: 116 AWPQDLIVFDDKVKEETTKEKLAKTLFKSISPTMPKSCNVLYAYAHQVMSKGQTISTNTD 175

Query: 123 KDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
           +D+FGV+   +I  + +  F  M EI  + II ++
Sbjct: 176 EDIFGVKKIVYIFQEQVIVFAEMREIGQAIIIAHI 210

[Close]

BLAST of Bhi04M000473 vs. TrEMBL
Match: tr|A0A251N5X3|A0A251N5X3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           IVAS  + E N PN+++H++P     ++V +  A   +  LP P+      V D +G +V
Sbjct: 9   IVASGTIVEINVPNQLVHNVPLGEGSIRVAVNCALKGDSPLPIPVKGVFETVGDALGSQV 68

Query: 63  AWPREFVIYAKAVKLSHPKEK--SVSFDIELSTLPESLRPLFKYA-KLEIPGGSIKVQLS 122
           AWP++ +++   VK    KEK     F     T+P+S   L+ YA ++   G +I     
Sbjct: 69  AWPQDLIVFDDKVKEETTKEKLAKTLFKSISPTMPKSCNVLYAYAHQVMSKGQTISTNTD 128

Query: 123 KDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
           +D+FGV+   +I  + +  F  M EI  + II ++
Sbjct: 129 EDIFGVKKIVYIFQEQVIVFAEMREIGQAIIIAHI 163

[Close]

BLAST of Bhi04M000473 vs. TrEMBL
Match: tr|A0A251N8Y8|A0A251N8Y8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           IVAS  + E N PN+++H++P     ++V +  A   +  LP P+      V D +G +V
Sbjct: 9   IVASGTIVEINVPNQLVHNVPLGEGSIRVAVNCALKGDSPLPIPVKGVFETVGDALGSQV 68

Query: 63  AWPREFVIYAKAVKLSHPKEK--SVSFDIELSTLPESLRPLFKYA-KLEIPGGSIKVQLS 122
           AWP++ +++   VK    KEK     F     T+P+S   L+ YA ++   G +I     
Sbjct: 69  AWPQDLIVFDDKVKEETTKEKLAKTLFKSISPTMPKSCNVLYAYAHQVMSKGQTISTNTD 128

Query: 123 KDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
           +D+FGV+   +I  + +  F  M EI  + II ++
Sbjct: 129 EDIFGVKKIVYIFQEQVIVFAEMREIGQAIIIAHI 163

[Close]

BLAST of Bhi04M000473 vs. TrEMBL
Match: tr|A0A251N5T4|A0A251N5T4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           IVAS  + E N PN+++H++P     ++V +  A   +  LP P+      V D +G +V
Sbjct: 9   IVASGTIVEINVPNQLVHNVPLGEGSIRVAVNCALKGDSPLPIPVKGVFETVGDALGSQV 68

Query: 63  AWPREFVIYAKAVKLSHPKEK--SVSFDIELSTLPESLRPLFKYA-KLEIPGGSIKVQLS 122
           AWP++ +++   VK    KEK     F     T+P+S   L+ YA ++   G +I     
Sbjct: 69  AWPQDLIVFDDKVKEETTKEKLAKTLFKSISPTMPKSCNVLYAYAHQVMSKGQTISTNTD 128

Query: 123 KDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
           +D+FGV+   +I  + +  F  M EI  + II ++
Sbjct: 129 EDIFGVKKIVYIFQEQVIVFAEMREIGQAIIIAHI 163

[Close]

BLAST of Bhi04M000473 vs. TrEMBL
Match: tr|A0A251N5U0|A0A251N5U0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 44/156 (28.21%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           IVAS  + E N PN+++H++P     ++V +  A   +  LP P+      V D +G +V
Sbjct: 9   IVASGTIVEINVPNQLVHNVPLGEGSIRVAVNCALKGDSPLPIPVKGVFETVGDALGSQV 68

Query: 63  AWPREFVIYAKAVKLSHPKEKSVS---FDIELSTLPESLRPLFKYA-KLEIPGGSIKVQL 122
           AWP++ +++   VK     ++ ++   F     T+P+S   L+ YA ++   G +I    
Sbjct: 69  AWPQDLIVFDDKVKKEETTKEKLAKTLFKSISPTMPKSCNVLYAYAHQVMSKGQTISTNT 128

Query: 123 SKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
            +D+FGV+   +I  + +  F  M EI  + II ++
Sbjct: 129 DEDIFGVKKIVYIFQEQVIVFAEMREIGQAIIIAHI 164

[Close]

BLAST of Bhi04M000473 vs. NCBI nr
Match: PQM38726.1 (uncharacterized protein Pyn_06344 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 79.7 bits (195), Expect = 9.5e-12
Identity = 45/156 (28.85%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           +VAS  + E N PN+++H++P     ++V +  A   +  LP P+   +  V D +G +V
Sbjct: 9   LVASGTIVEINVPNQLVHNVPLGEGNIRVAVNCALQGDSPLPIPVKGVLETVGDAIGSQV 68

Query: 63  AWPREFVIYAKAVKLSHPKEKSVS---FDIELSTLPESLRPLFKYA-KLEIPGGSIKVQL 122
           AWP++ +++   VK     ++ ++   F     T+P+S + L+ YA ++   G +I   +
Sbjct: 69  AWPQDLIVFDDKVKKRETTKEKLAKTLFKTISPTMPKSCKVLYAYAHQVMSKGQTISTNI 128

Query: 123 SKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
            +D+FGV+   +I  + +  F  M EI  S II Y+
Sbjct: 129 DEDIFGVKKMVYIFQEQVIAFAEMREIGQSIIIAYI 164

[Close]

BLAST of Bhi04M000473 vs. NCBI nr
Match: PQM39966.1 (hypothetical protein Pyn_31828 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           +VAS  + E N PN+++H++P     ++V +  A   +  LP P+   +  VED +G +V
Sbjct: 114 LVASGTIVEINVPNQMVHNVPLGKGNIRVAVNYALQGDSPLPIPVKGVLETVEDAIGSQV 173

Query: 63  AWPREFVIYAKAVKLSHPKEKSVS---FDIELSTLPESLRPLFKYA-KLEIPGGSIKVQL 122
           AWP++ +++   VK     ++ ++   F     T+P+S + L+ YA ++   G +I   +
Sbjct: 174 AWPQDLIVFDDKVKKRETTKEKLAKTLFKSISPTMPKSCKVLYAYAHQVMSKGQTISTNI 233

Query: 123 SKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
            +D+FGV+   +I  + +  F  M EI  + I  Y+
Sbjct: 234 DEDIFGVKKMVYIFQEQVIAFAEMREIGQAIITAYI 269

[Close]

BLAST of Bhi04M000473 vs. NCBI nr
Match: PQQ05544.1 (hypothetical protein Pyn_27143 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           +VAS  + E N PN+++H++P     ++V +  A   +  LP P+   +  VED +G +V
Sbjct: 105 LVASGTIVEINVPNQMVHNVPLGKGNIRVAVNYALQGDSPLPIPVKGVLETVEDAIGSQV 164

Query: 63  AWPREFVIYAKAVKLSHPKEKSVS---FDIELSTLPESLRPLFKYA-KLEIPGGSIKVQL 122
           AWP++ +++   VK     ++ ++   F     T+P+S + L+ YA ++   G +I   +
Sbjct: 165 AWPQDLIVFDDKVKKRETTKEKLAKTLFKSISPTMPKSCKVLYAYAHQVMSKGQTISTNI 224

Query: 123 SKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
            +D+FGV+   +I  + +  F  M EI  + I  Y+
Sbjct: 225 DEDIFGVKKMVYIFQEQVIAFAEMREIGQAIITAYI 260

[Close]

BLAST of Bhi04M000473 vs. NCBI nr
Match: PQQ17856.1 (hypothetical protein Pyn_24435 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           +VAS  + E N PN+++H++P     ++V +  A   +  LP P+   +  VED +G +V
Sbjct: 105 LVASGTIVEINVPNQMVHNVPLGKGNIRVAVNYALQGDSPLPIPVKGVLETVEDAIGSQV 164

Query: 63  AWPREFVIYAKAVKLSHPKEKSVS---FDIELSTLPESLRPLFKYA-KLEIPGGSIKVQL 122
           AWP++ +++   VK     ++ ++   F     T+P+S + L+ YA ++   G +I   +
Sbjct: 165 AWPQDLIVFDDKVKKRETTKEKLAKTLFKSISPTMPKSCKVLYAYAHQVMSKGQTISTNI 224

Query: 123 SKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
            +D+FGV+   +I  + +  F  M EI  + I  Y+
Sbjct: 225 DEDIFGVKKMVYIFQEQVIAFAEMREIGQAIITAYI 260

[Close]

BLAST of Bhi04M000473 vs. NCBI nr
Match: PQM41340.1 (hypothetical protein Pyn_28740 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 3   IVASTFVYETNDPNEILHDMPTEGDIVKVIIELATTKNHLLPYPIDEKVVGVEDVVGYEV 62
           +VAS  + E N PN+++H++P     ++V +  A   +  LP P+   +  VED +G +V
Sbjct: 99  LVASGTIVEINVPNQMVHNVPLGEGNIRVAVNYALQGDSPLPIPVKGVLEMVEDAIGSQV 158

Query: 63  AWPREFVIYAKAVKLSHPKEKSVS---FDIELSTLPESLRPLFKYA-KLEIPGGSIKVQL 122
           AWP++ +++   VK     ++ ++   F     T+P+S + L+ YA ++   G +I   +
Sbjct: 159 AWPQDLIVFDDKVKKRETTKEKLAKTLFKSISPTMPKSCKVLYAYAHQVMSKGQTISTNI 218

Query: 123 SKDVFGVRLDFFIMDDDIFHFCMMVEIAVSNIILYM 155
            +D+FGV+   +I  + +  F  M EI  + I  Y+
Sbjct: 219 DEDIFGVKKMVYIFQEQVIAFAEMREIGQAIITAYI 254

The following BLAST results are available for this feature:

BLAST of Bhi04M000473 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04M000473 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04M000473 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251N814\|A0A251N814_PRUPE	4.1e-11	30.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1	[more]
tr\|A0A251N5X3\|A0A251N5X3_PRUPE	4.1e-11	30.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1	[more]
tr\|A0A251N8Y8\|A0A251N8Y8_PRUPE	4.1e-11	30.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1	[more]
tr\|A0A251N5T4\|A0A251N5T4_PRUPE	4.1e-11	30.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1	[more]
tr\|A0A251N5U0\|A0A251N5U0_PRUPE	3.5e-10	28.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G026800 PE=4 SV=1	[more]

BLAST of Bhi04M000473 vs. NCBI nr


Match Name	E-value	Identity	Description
PQM38726.1	9.5e-12	28.85	uncharacterized protein Pyn_06344 [Prunus yedoensis var. nudiflora]	[more]
PQM39966.1	2.1e-11	28.21	hypothetical protein Pyn_31828 [Prunus yedoensis var. nudiflora]	[more]
PQQ05544.1	2.1e-11	28.21	hypothetical protein Pyn_27143 [Prunus yedoensis var. nudiflora]	[more]
PQQ17856.1	2.1e-11	28.21	hypothetical protein Pyn_24435 [Prunus yedoensis var. nudiflora]	[more]
PQM41340.1	2.8e-11	28.21	hypothetical protein Pyn_28740 [Prunus yedoensis var. nudiflora]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G000473	Bhi04G000473	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000473.exon2	Bhi04M000473.exon2	exon
Bhi04M000473.exon1	Bhi04M000473.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M000473	cds.Bhi04M000473	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M000473	Bhi04M000473-protein	polypeptide