Bhi04M000041 (mRNA) Wax gourd

Overview
NameBhi04M000041
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr4 : 1408013 .. 1408264 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGAATGTCTCCAAACAGAGCTTGAAAGGTTGAGAAAAGAGAATGAAGCTCTAAAGTTTATGCTCAGAGTTGTGAGCATCAAGAATTTGGTTTCTCAAACGGATGTTTGTTTAAGAGATCAAAGTGATGGTTTGAACCAAAGTTCGAACACAAGAGCGAGAGCCGATCTCGAAGTTCCACTCGCTCTCGCACTCGGACCTTCGTCCACGACCCAAGCATATGTTAGAACTAGCTTCAAAGACCAAGCATTG

mRNA sequence

GTGGAATGTCTCCAAACAGAGCTTGAAAGGTTGAGAAAAGAGAATGAAGCTCTAAAGTTTATGCTCAGAGTTGTGAGCATCAAGAATTTGGTTTCTCAAACGGATGTTTGTTTAAGAGATCAAAGTGATGGTTTGAACCAAAGTTCGAACACAAGAGCGAGAGCCGATCTCGAAGTTCCACTCGCTCTCGCACTCGGACCTTCGTCCACGACCCAAGCATATGTTAGAACTAGCTTCAAAGACCAAGCATTG

Coding sequence (CDS)

GTGGAATGTCTCCAAACAGAGCTTGAAAGGTTGAGAAAAGAGAATGAAGCTCTAAAGTTTATGCTCAGAGTTGTGAGCATCAAGAATTTGGTTTCTCAAACGGATGTTTGTTTAAGAGATCAAAGTGATGGTTTGAACCAAAGTTCGAACACAAGAGCGAGAGCCGATCTCGAAGTTCCACTCGCTCTCGCACTCGGACCTTCGTCCACGACCCAAGCATATGTTAGAACTAGCTTCAAAGACCAAGCATTG

Protein sequence

VECLQTELERLRKENEALKFMLRVVSIKNLVSQTDVCLRDQSDGLNQSSNTRARADLEVPLALALGPSSTTQAYVRTSFKDQAL
Homology
[Close]
BLAST of Bhi04M000041 vs. TrEMBL
Match: tr|A0A0A0LMJ1|A0A0A0LMJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382660 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 60/87 (68.97%), Postives = 66/87 (75.86%), Query Frame = 0 

Query: 1  VECLQTELERLRKENEALKFMLRVVSIKNLVSQTDVCLRDQSDGLNQSSNTRARADLEV- 60
          VECLQTELE+LRKENEALK ML+VVSIKNLVSQ DVC RD     N   +   RA+L+V 
Sbjct: 5  VECLQTELEKLRKENEALKLMLKVVSIKNLVSQVDVCSRDHRHDQNDEGSRSERANLKVS 64

Query: 61 --PLALALGPSSTTQAYVRTSFKDQAL 85
             LALAL  SSTTQAY RT+FKDQAL
Sbjct: 65 PPALALALETSSTTQAYARTTFKDQAL 91

[Close]
BLAST of Bhi04M000041 vs. TrEMBL
Match: tr|A0A1S4DVG5|A0A1S4DVG5_CUCME (probable WRKY transcription factor 40 OS=Cucumis melo OX=3656 GN=LOC103488348 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.4e-07
Identity = 39/64 (60.94%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 21 MLRVVSIKNLVSQTDVCLRDQSDGLNQSSNTRARADLEVPLALALGPSSTTQAYVRTSFK 80
          ML+VVSIKNLVSQ DVC RD     N   +   RADL V     L  SSTTQAY  TSFK
Sbjct: 1  MLKVVSIKNLVSQVDVCSRDHDQ--NDEGSRSERADLRVS-PPTLETSSTTQAYATTSFK 60

Query: 81 DQAL 85
          DQAL
Sbjct: 61 DQAL 61

[Close]
BLAST of Bhi04M000041 vs. NCBI nr
Match: XP_004138843.1 (PREDICTED: probable WRKY transcription factor 60 [Cucumis sativus] >KGN62993.1 hypothetical protein Csa_2G382660 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 8.8e-20
Identity = 60/87 (68.97%), Postives = 66/87 (75.86%), Query Frame = 0 

Query: 1  VECLQTELERLRKENEALKFMLRVVSIKNLVSQTDVCLRDQSDGLNQSSNTRARADLEV- 60
          VECLQTELE+LRKENEALK ML+VVSIKNLVSQ DVC RD     N   +   RA+L+V 
Sbjct: 5  VECLQTELEKLRKENEALKLMLKVVSIKNLVSQVDVCSRDHRHDQNDEGSRSERANLKVS 64

Query: 61 --PLALALGPSSTTQAYVRTSFKDQAL 85
             LALAL  SSTTQAY RT+FKDQAL
Sbjct: 65 PPALALALETSSTTQAYARTTFKDQAL 91

[Close]
BLAST of Bhi04M000041 vs. NCBI nr
Match: XP_022132094.1 (WRKY transcription factor WRKY76-like [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 1  VECLQTELERLRKENEALKFMLRVVSIKNLV--------SQTDVCLRDQSDGLNQSSNTR 60
          VECLQ ELERLRK NEAL F L V+S+KNL+        SQ  V L  +   LN +SN R
Sbjct: 11 VECLQKELERLRKANEALNFALGVMSMKNLIISRETNTNSQVGVFL--EGSDLNCNSNKR 70

Query: 61 ARADLEVPLALALGPSSTTQAYVRTSFKDQAL 85
          ARADL+      LG  STTQ YVRT FKDQAL
Sbjct: 71 ARADLQA--RAGLGAPSTTQTYVRTGFKDQAL 98

[Close]
BLAST of Bhi04M000041 vs. NCBI nr
Match: XP_016899977.1 (PREDICTED: probable WRKY transcription factor 40 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 39/64 (60.94%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 21 MLRVVSIKNLVSQTDVCLRDQSDGLNQSSNTRARADLEVPLALALGPSSTTQAYVRTSFK 80
          ML+VVSIKNLVSQ DVC RD     N   +   RADL V     L  SSTTQAY  TSFK
Sbjct: 1  MLKVVSIKNLVSQVDVCSRDHDQ--NDEGSRSERADLRVS-PPTLETSSTTQAYATTSFK 60

Query: 81 DQAL 85
          DQAL
Sbjct: 61 DQAL 61

The following BLAST results are available for this feature:
BLAST of Bhi04M000041 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04M000041 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04M000041 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMJ1|A0A0A0LMJ1_CUCSA5.8e-2068.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382660 PE=4 SV=1[more]
tr|A0A1S4DVG5|A0A1S4DVG5_CUCME7.4e-0760.94probable WRKY transcription factor 40 OS=Cucumis melo OX=3656 GN=LOC103488348 PE... [more]
BLAST of Bhi04M000041 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138843.18.8e-2068.97PREDICTED: probable WRKY transcription factor 60 [Cucumis sativus] >KGN62993.1 h... [more]
XP_022132094.12.3e-1257.61WRKY transcription factor WRKY76-like [Momordica charantia][more]
XP_016899977.11.1e-0660.94PREDICTED: probable WRKY transcription factor 40 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi04G000041Bhi04G000041gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi04M000041.exon1Bhi04M000041.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi04M000041cds.Bhi04M000041CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi04M000041Bhi04M000041-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21