Bhi03M002345 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03M002345
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Xyloglucan endotransglucosylase/hydrolase
Location	chr3 : 72871217 .. 72871438 (+)
Sequence length	222

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCAATTAGGTTCTACGTGGATGGGAGGCCAATAAGGGAGATCAAGAACATTGAAGCCAATGGGGCACCATGGCTGTCGGAGGCCCTTGATTCCGGCAACCAGAAAATGGTGCGATGGGTTCAGAAGAATTATATGATTTATAATTACTGCACCGACAAAAAGAGATTCCTTCAAGGCCTTCCTCGGGAGTACACTATTCAGGCAGCCAAGCCTTAG

mRNA sequence

ATGGGGTCAATTAGGTTCTACGTGGATGGGAGGCCAATAAGGGAGATCAAGAACATTGAAGCCAATGGGGCACCATGGCTGTCGGAGGCCCTTGATTCCGGCAACCAGAAAATGGTGCGATGGGTTCAGAAGAATTATATGATTTATAATTACTGCACCGACAAAAAGAGATTCCTTCAAGGCCTTCCTCGGGAGTACACTATTCAGGCAGCCAAGCCTTAG

Coding sequence (CDS)

ATGGGGTCAATTAGGTTCTACGTGGATGGGAGGCCAATAAGGGAGATCAAGAACATTGAAGCCAATGGGGCACCATGGCTGTCGGAGGCCCTTGATTCCGGCAACCAGAAAATGGTGCGATGGGTTCAGAAGAATTATATGATTTATAATTACTGCACCGACAAAAAGAGATTCCTTCAAGGCCTTCCTCGGGAGTACACTATTCAGGCAGCCAAGCCTTAG

Protein sequence

MGSIRFYVDGRPIREIKNIEANGAPWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPREYTIQAAKP

Homology

[Close]

BLAST of Bhi03M002345 vs. Swiss-Prot
Match: sp|Q38910|XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana OX=3702 GN=XTH23 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-12
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 18  NIEANGA--PWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPRE 66
           N+   G+   WLS+ LDS  Q+ +RWVQ NYMIYNYCTD KRF QGLPRE
Sbjct: 233 NVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPRE 282

[Close]

BLAST of Bhi03M002345 vs. Swiss-Prot
Match: sp|Q38857|XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana OX=3702 GN=XTH22 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-11
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 26  WLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPRE 66
           WLS+ LDS  Q+ +RWVQ+NYMIYNYCTD KRF QGLP+E
Sbjct: 241 WLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKE 280

[Close]

BLAST of Bhi03M002345 vs. Swiss-Prot
Match: sp|P24806|XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana OX=3702 GN=XTH24 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-10
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 17  KNIEANGAP---WLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPREYT 68
           +NI+ +  P   W ++ +DS +Q  ++WVQKNYMIYNYCTD +RF QG P+E T
Sbjct: 213 RNIKIDSKPNSNWYTQEMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKECT 266

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BLAST of Bhi03M002345 vs. Swiss-Prot
Match: sp|O80803|XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana OX=3702 GN=XTH17 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 6   FYVDGRPIREIKNIEANGAPWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPRE 65
           + VDG      K+  +  +PW ++ LDS  Q  ++ VQ  YMIYNYCTDK+RF +G+P E
Sbjct: 221 YNVDGCVWANGKSSCSANSPWFTQKLDSNGQTRMKGVQSKYMIYNYCTDKRRFPRGVPAE 280

Query: 66  YT 68
            T
Sbjct: 281 CT 282

[Close]

BLAST of Bhi03M002345 vs. Swiss-Prot
Match: sp|Q9ZV40|XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana OX=3702 GN=XTH21 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-08
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 26  WLSE-ALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPREYT 68
           W S+  +DS ++K++RWVQ+ +M+YNYC DKKRF  GLP E T
Sbjct: 255 WFSQRGMDSSSKKVLRWVQRKFMVYNYCKDKKRFSNGLPVECT 297

[Close]

BLAST of Bhi03M002345 vs. TAIR10
Match: AT4G25810.1 (xyloglucan endotransglycosylase 6)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-13
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 18  NIEANGA--PWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPRE 66
           N+   G+   WLS+ LDS  Q+ +RWVQ NYMIYNYCTD KRF QGLPRE
Sbjct: 233 NVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPRE 282

[Close]

BLAST of Bhi03M002345 vs. TAIR10
Match: AT5G57560.1 (Xyloglucan endotransglucosylase/hydrolase family protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 26  WLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPRE 66
           WLS+ LDS  Q+ +RWVQ+NYMIYNYCTD KRF QGLP+E
Sbjct: 241 WLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKE 280

[Close]

BLAST of Bhi03M002345 vs. TAIR10
Match: AT4G30270.1 (xyloglucan endotransglucosylase/hydrolase 24)

HSP 1 Score: 66.2 bits (160), Expect = 9.3e-12
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 17  KNIEANGAP---WLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPREYT 68
           +NI+ +  P   W ++ +DS +Q  ++WVQKNYMIYNYCTD +RF QG P+E T
Sbjct: 213 RNIKIDSKPNSNWYTQEMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKECT 266

[Close]

BLAST of Bhi03M002345 vs. TAIR10
Match: AT1G65310.1 (xyloglucan endotransglucosylase/hydrolase 17)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 6   FYVDGRPIREIKNIEANGAPWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPRE 65
           + VDG      K+  +  +PW ++ LDS  Q  ++ VQ  YMIYNYCTDK+RF +G+P E
Sbjct: 221 YNVDGCVWANGKSSCSANSPWFTQKLDSNGQTRMKGVQSKYMIYNYCTDKRRFPRGVPAE 280

Query: 66  YT 68
            T
Sbjct: 281 CT 282

[Close]

BLAST of Bhi03M002345 vs. TAIR10
Match: AT2G18800.1 (xyloglucan endotransglucosylase/hydrolase 21)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-09
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 26  WLSE-ALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPREYT 68
           W S+  +DS ++K++RWVQ+ +M+YNYC DKKRF  GLP E T
Sbjct: 255 WFSQRGMDSSSKKVLRWVQRKFMVYNYCKDKKRFSNGLPVECT 297

[Close]

BLAST of Bhi03M002345 vs. TrEMBL
Match: tr|Q84V49|Q84V49_CUCSA (Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=XTH4 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-19
Identity = 58/132 (43.94%), Postives = 63/132 (47.73%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+EANG                                        
Sbjct: 165 ILFYVDGRPIREFKNMEANGAPYPKKQPMRLYASLWNGEDWATRGGLIKTDWTKAPFTAS 224

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APWLSEALDSGNQKM+RWVQKNYMIYNYCTD+KRF QG
Sbjct: 225 FRAYKPNGCVWTNAASWCCQNSAPWLSEALDSGNQKMLRWVQKNYMIYNYCTDEKRFPQG 284

[Close]

BLAST of Bhi03M002345 vs. TrEMBL
Match: tr|A0A0A0LU38|A0A0A0LU38_CUCSA (Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=Csa_1G422980 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-19
Identity = 58/132 (43.94%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+EANG                                        
Sbjct: 165 IVFYVDGRPIREFKNMEANGAPYPKKQPMRLYASLWNGEDWATRGGLIKTDWTKAPFTAS 224

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APWLSEALDSGNQKM+RWVQKNYMIYNYCTDKKRF QG
Sbjct: 225 FRAYKPNGCVWTNAASWCCQNSAPWLSEALDSGNQKMLRWVQKNYMIYNYCTDKKRFPQG 284

[Close]

BLAST of Bhi03M002345 vs. TrEMBL
Match: tr|A0A2P4LIU7|A0A2P4LIU7_QUESU (Xyloglucan endotransglucosylase/hydrolase OS=Quercus suber OX=58331 GN=CFP56_05794 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 47/132 (35.61%), Postives = 56/132 (42.42%), Query Frame = 0


Query: 2   GSIRFYVDGRPIREIKNIEANGAP------------------------------------ 61
           G+I FYVDGRPIRE KN+E+ G P                                    
Sbjct: 256 GNIIFYVDGRPIREFKNLESFGIPYPKNQSMRVYSSLWNADDWATRGGLVKTDWTQAPFT 315

Query: 62  -----------------------------WLSEALDSGNQKMVRWVQKNYMIYNYCTDKK 69
                                        WLS+ LDS +QK + WVQKNYM+YNYC+D K
Sbjct: 316 ASFQSFNANACIWSNGVSSCSSSNSTSNAWLSQQLDSRSQKRLTWVQKNYMVYNYCSDTK 375

[Close]

BLAST of Bhi03M002345 vs. TrEMBL
Match: tr|V7C9G8|V7C9G8_PHAVU (Xyloglucan endotransglucosylase/hydrolase OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G147300g PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-12
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 18  NIEANGAPWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQGLPREYTIQ 70
           N  ++G  WLS+ LD+ NQKM++WVQKNYMIYNYCTD +RF QGLP E T++
Sbjct: 237 NSSSSGKTWLSQKLDATNQKMLKWVQKNYMIYNYCTDIRRFPQGLPLECTVR 288

[Close]

BLAST of Bhi03M002345 vs. TrEMBL
Match: tr|A0A2K3MTL9|A0A2K3MTL9_TRIPR (Xyloglucan endotransglucosylase/hydrolase OS=Trifolium pratense OX=57577 GN=L195_g017215 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 45/129 (34.88%), Postives = 53/129 (41.09%), Query Frame = 0


Query: 6   FYVDGRPIREIKNIEANGAP---------------------------------------- 65
           FY+DGRPIRE KN+E+ G P                                        
Sbjct: 138 FYIDGRPIREFKNLESEGVPYPKNQPMKLYSSLWNADDWATRGGLVKTDWTQAPFTASFR 197

Query: 66  -------------------------WLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQ 70
                                    WLS+ LDS NQK ++WVQKNYMIYNYC D KRF Q
Sbjct: 198 NFKAHGCVWSNGVSSCNSNSSSNNAWLSQQLDSTNQKRLKWVQKNYMIYNYCNDLKRFPQ 257

[Close]

BLAST of Bhi03M002345 vs. NCBI nr
Match: CAD88260.1 (putative xyloglucan endotransglycosylase [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-19
Identity = 58/132 (43.94%), Postives = 63/132 (47.73%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+EANG                                        
Sbjct: 165 ILFYVDGRPIREFKNMEANGAPYPKKQPMRLYASLWNGEDWATRGGLIKTDWTKAPFTAS 224

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APWLSEALDSGNQKM+RWVQKNYMIYNYCTD+KRF QG
Sbjct: 225 FRAYKPNGCVWTNAASWCCQNSAPWLSEALDSGNQKMLRWVQKNYMIYNYCTDEKRFPQG 284

[Close]

BLAST of Bhi03M002345 vs. NCBI nr
Match: XP_004146358.1 (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucumis sativus] >KGN65440.1 hypothetical protein Csa_1G422980 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 8.4e-19
Identity = 58/132 (43.94%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+EANG                                        
Sbjct: 165 IVFYVDGRPIREFKNMEANGAPYPKKQPMRLYASLWNGEDWATRGGLIKTDWTKAPFTAS 224

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APWLSEALDSGNQKM+RWVQKNYMIYNYCTDKKRF QG
Sbjct: 225 FRAYKPNGCVWTNAASWCCQNSAPWLSEALDSGNQKMLRWVQKNYMIYNYCTDKKRFPQG 284

[Close]

BLAST of Bhi03M002345 vs. NCBI nr
Match: XP_023531494.1 (probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 54/132 (40.91%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+E+NG                                        
Sbjct: 162 ILFYVDGRPIREYKNMESNGVPYPKKQAMRLYASLWNAEDWATRGGVVKTDWTKAPFTAA 221

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APW+SEALD+GNQK++RWVQK YMIYNYC DKKRF QG
Sbjct: 222 FRSYNANGCVWTNAASWCCQNSAPWMSEALDAGNQKVLRWVQKKYMIYNYCVDKKRFPQG 281

[Close]

BLAST of Bhi03M002345 vs. NCBI nr
Match: XP_023003589.1 (probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 53/132 (40.15%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+E+NG                                        
Sbjct: 162 ILFYVDGRPIREYKNMESNGVPYPKKQAMRLYASLWNADDWATRGGLVKTDWTKAPFTAA 221

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APW+SEALD+GNQK++RWVQK YMIYNYC D+KRF QG
Sbjct: 222 FRSYNANGCVWTNAASWCCQNSAPWMSEALDAGNQKVLRWVQKKYMIYNYCADRKRFPQG 281

[Close]

BLAST of Bhi03M002345 vs. NCBI nr
Match: XP_022933962.1 (probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 53/132 (40.15%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 4   IRFYVDGRPIREIKNIEANG---------------------------------------- 63
           I FYVDGRPIRE KN+E+NG                                        
Sbjct: 162 ILFYVDGRPIREYKNMESNGVPYPKKQAMRLYASLWNADDWATRGGLVKTDWTKAPFTAA 221

Query: 64  ----------------------APWLSEALDSGNQKMVRWVQKNYMIYNYCTDKKRFLQG 74
                                 APW+SEALD+GNQK++RWVQK YMIYNYC DKKRF +G
Sbjct: 222 FRSYNANGCVWTNAASWCCQNSAPWMSEALDAGNQKVLRWVQKKYMIYNYCADKKRFPRG 281

The following BLAST results are available for this feature:

BLAST of Bhi03M002345 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38910\|XTH23_ARATH	3.1e-12	64.00	Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis tha...	[more]
sp\|Q38857\|XTH22_ARATH	2.6e-11	72.50	Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana OX=...	[more]
sp\|P24806\|XTH24_ARATH	1.7e-10	51.85	Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana OX=...	[more]
sp\|O80803\|XTH17_ARATH	3.2e-09	45.16	Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis tha...	[more]
sp\|Q9ZV40\|XTH21_ARATH	3.5e-08	55.81	Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis tha...	[more]

BLAST of Bhi03M002345 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25810.1	1.7e-13	64.00	xyloglucan endotransglycosylase 6	[more]
AT5G57560.1	1.4e-12	72.50	Xyloglucan endotransglucosylase/hydrolase family protein	[more]
AT4G30270.1	9.3e-12	51.85	xyloglucan endotransglucosylase/hydrolase 24	[more]
AT1G65310.1	1.8e-10	45.16	xyloglucan endotransglucosylase/hydrolase 17	[more]
AT2G18800.1	1.9e-09	55.81	xyloglucan endotransglucosylase/hydrolase 21	[more]

BLAST of Bhi03M002345 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q84V49\|Q84V49_CUCSA	2.5e-19	43.94	Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=XTH4 PE=...	[more]
tr\|A0A0A0LU38\|A0A0A0LU38_CUCSA	5.6e-19	43.94	Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=Csa_1G42...	[more]
tr\|A0A2P4LIU7\|A0A2P4LIU7_QUESU	2.3e-12	35.61	Xyloglucan endotransglucosylase/hydrolase OS=Quercus suber OX=58331 GN=CFP56_057...	[more]
tr\|V7C9G8\|V7C9G8_PHAVU	6.6e-12	63.46	Xyloglucan endotransglucosylase/hydrolase OS=Phaseolus vulgaris OX=3885 GN=PHAVU...	[more]
tr\|A0A2K3MTL9\|A0A2K3MTL9_TRIPR	1.1e-11	34.88	Xyloglucan endotransglucosylase/hydrolase OS=Trifolium pratense OX=57577 GN=L195...	[more]

BLAST of Bhi03M002345 vs. NCBI nr


Match Name	E-value	Identity	Description
CAD88260.1	3.8e-19	43.94	putative xyloglucan endotransglycosylase [Cucumis sativus]	[more]
XP_004146358.1	8.4e-19	43.94	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucumi...	[more]
XP_023531494.1	4.6e-17	40.91	probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita pepo su...	[more]
XP_023003589.1	1.0e-16	40.15	probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita maxima]	[more]
XP_022933962.1	1.3e-16	40.15	probable xyloglucan endotransglucosylase/hydrolase protein 23 [Cucurbita moschat...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006073	cellular glucan metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall
GO:0048046	apoplast

Vocabulary: **Molecular Function**
Term	Definition
GO:0016762	xyloglucan:xyloglucosyl transferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR013320	ConA-like_dom_sf
IPR010713	XET_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006073	cellular glucan metabolic process
biological_process	GO:0042546	cell wall biogenesis
biological_process	GO:0071555	cell wall organization
biological_process	GO:0010411	xyloglucan metabolic process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005618	cell wall
molecular_function	GO:0016762	xyloglucan:xyloglucosyl transferase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi03G002345	Bhi03G002345	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M002345.exon1	Bhi03M002345.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi03M002345	cds.Bhi03M002345	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi03M002345	Bhi03M002345-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.60.120.200		coord: 1..70 e-value: 4.9E-14 score: 54.3
None	No IPR available	PANTHER	PTHR31062:SF63	SUBFAMILY NOT NAMED	coord: 26..69
None	No IPR available	PANTHER	PTHR31062	FAMILY NOT NAMED	coord: 26..69
IPR010713	Xyloglucan endo-transglycosylase, C-terminal	PFAM	PF06955	XET_C	coord: 22..65 e-value: 3.4E-17 score: 62.0
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	SSF49899	Concanavalin A-like lectins/glucanases	coord: 3..69