Bhi03M002180 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03M002180
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	F-box protein
Location	chr3 : 65710983 .. 65711459 (+)
Sequence length	303

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGGGAAGGAGGAGCAGATCAGTTTTGAAGTATAATCGTTCTCCTAAACGTGTCATGTTTTCTTCCGATGATGAAAAATCAACAATTTCTTCCGGCGATACGTCTTTGCTCGAGTTTTCTTTCGATGATGAAAAATCGACTATTTCTTCCGGCGATACGTCTCTGCTCGAGGATCTGCCTCAAGATCTTCTTGTTAGGACCTATTCAAATCGCTTTATCTAATTTATATTCGACTTGCTATGTTTTCGACTATTGTTTCTGAATTGTTTTTCCCCCTCTCTATCAGATTAGGGTTTTCTGCGGGGTGGAACATGGTGATTTGAAAAACCTACTCCGCATTTCAAAAACAATCAGTGAAGCGGTAAAACATAGAACTCGAATCACTGATTTGTTTCATTTTATTCGATTATTCAGTGATTGATTTCAATTGCATTTTTACAGGCCTTGAGTGCAAAAAAAATGGCATTTTGA

mRNA sequence

ATGGGGTTGGGAAGGAGGAGCAGATCAGTTTTGAAGTATAATCGTTCTCCTAAACGTGTCATGTTTTCTTCCGATGATGAAAAATCAACAATTTCTTCCGGCGATACGTCTTTGCTCGAGTTTTCTTTCGATGATGAAAAATCGACTATTTCTTCCGGCGATACGTCTCTGCTCGAGGATCTGCCTCAAGATCTTCTTATTAGGGTTTTCTGCGGGGTGGAACATGGTGATTTGAAAAACCTACTCCGCATTTCAAAAACAATCAGTGAAGCGGCCTTGAGTGCAAAAAAAATGGCATTTTGA

Coding sequence (CDS)

ATGGGGTTGGGAAGGAGGAGCAGATCAGTTTTGAAGTATAATCGTTCTCCTAAACGTGTCATGTTTTCTTCCGATGATGAAAAATCAACAATTTCTTCCGGCGATACGTCTTTGCTCGAGTTTTCTTTCGATGATGAAAAATCGACTATTTCTTCCGGCGATACGTCTCTGCTCGAGGATCTGCCTCAAGATCTTCTTATTAGGGTTTTCTGCGGGGTGGAACATGGTGATTTGAAAAACCTACTCCGCATTTCAAAAACAATCAGTGAAGCGGCCTTGAGTGCAAAAAAAATGGCATTTTGA

Protein sequence

MGLGRRSRSVLKYNRSPKRVMFSSDDEKSTISSGDTSLLEFSFDDEKSTISSGDTSLLEDLPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF

Homology

[Close]

BLAST of Bhi03M002180 vs. Swiss-Prot
Match: sp|O65416|SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQDLLIRV CGV+H DLK+L  +SK+I EA+L AK + F
Sbjct: 127 LPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHF 166

[Close]

BLAST of Bhi03M002180 vs. Swiss-Prot
Match: sp|Q8GX77|FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-06
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LP D+L+R+ CGVEH DLK L  +SKTI EA + AK+  F
Sbjct: 84  LPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHF 123

[Close]

BLAST of Bhi03M002180 vs. Swiss-Prot
Match: sp|Q9S9T6|FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           L QD+LIRV C V+H DL  L R+SKTI +A + AKK  F
Sbjct: 67  LHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHF 106

[Close]

BLAST of Bhi03M002180 vs. TAIR10
Match: AT4G21510.1 (F-box family protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-08
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQDLLIRV CGV+H DLK+L  +SK+I EA+L AK + F
Sbjct: 127 LPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHF 166

[Close]

BLAST of Bhi03M002180 vs. TAIR10
Match: AT4G05010.1 (F-box family protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           L QD+LIRV C V+H DL  L R+SKTI +A + AKK  F
Sbjct: 67  LHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHF 106

[Close]

BLAST of Bhi03M002180 vs. TAIR10
Match: AT1G61340.2 (F-box family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-05
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 65  LLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           +++R+ CGVEH DLK L  +SKTI EA + AK+  F
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHF 169

[Close]

BLAST of Bhi03M002180 vs. TrEMBL
Match: tr|A0A078G1Z7|A0A078G1Z7_BRANA (BnaC05g08600D protein OS=Brassica napus OX=3708 GN=BnaC05g08600D PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIRV CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 58  LPQDILIRVICGVEHGDLKQLFNVSKTIREATLIAKKSHF 97

[Close]

BLAST of Bhi03M002180 vs. TrEMBL
Match: tr|A0A1J3J871|A0A1J3J871_NOCCA (F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR17536_c0_g1_i1_g.50186 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 9   LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKWHF 48

[Close]

BLAST of Bhi03M002180 vs. TrEMBL
Match: tr|A0A1J3EFJ7|A0A1J3EFJ7_NOCCA (F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR6895_c0_g1_i1_g.23411 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 49  LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKWHF 88

[Close]

BLAST of Bhi03M002180 vs. TrEMBL
Match: tr|A0A1J3HCK8|A0A1J3HCK8_NOCCA (F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR1244_c0_g1_i1_g.3247 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 71  LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKWHF 110

[Close]

BLAST of Bhi03M002180 vs. TrEMBL
Match: tr|M4DTM8|M4DTM8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 58  LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKSHF 97

[Close]

BLAST of Bhi03M002180 vs. NCBI nr
Match: XP_013583517.1 (PREDICTED: F-box protein At1g61340-like [Brassica oleracea var. oleracea] >XP_022558052.1 F-box protein At1g61340 [Brassica napus] >CDY19351.1 BnaC05g08600D [Brassica napus])

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIRV CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 58  LPQDILIRVICGVEHGDLKQLFNVSKTIREATLIAKKSHF 97

[Close]

BLAST of Bhi03M002180 vs. NCBI nr
Match: XP_009148454.1 (PREDICTED: F-box protein At1g61340-like isoform X1 [Brassica rapa])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 106 LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKSHF 145

[Close]

BLAST of Bhi03M002180 vs. NCBI nr
Match: XP_009148455.1 (PREDICTED: F-box protein At1g61340-like isoform X2 [Brassica rapa] >XP_009148456.1 PREDICTED: F-box protein At1g61340-like isoform X2 [Brassica rapa])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 58  LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKSHF 97

[Close]

BLAST of Bhi03M002180 vs. NCBI nr
Match: XP_013676166.1 (F-box protein At1g61340 [Brassica napus])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 106 LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKSHF 145

[Close]

BLAST of Bhi03M002180 vs. NCBI nr
Match: XP_018436068.1 (PREDICTED: F-box protein At1g61340-like [Raphanus sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 61  LPQDLLIRVFCGVEHGDLKNLLRISKTISEAALSAKKMAF 101
           LPQD+LIR+ CGVEHGDLK L  +SKTI EA L AKK  F
Sbjct: 73  LPQDILIRIICGVEHGDLKQLFNVSKTIREATLIAKKYHF 112

The following BLAST results are available for this feature:

BLAST of Bhi03M002180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65416\|SKI27_ARATH	1.2e-06	65.00	F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2	[more]
sp\|Q8GX77\|FB316_ARATH	4.5e-06	57.50	F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1	[more]
sp\|Q9S9T6\|FB220_ARATH	1.1e-04	57.50	F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1	[more]

BLAST of Bhi03M002180 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21510.1	6.5e-08	65.00	F-box family protein	[more]
AT4G05010.1	6.1e-06	57.50	F-box family protein	[more]
AT1G61340.2	4.0e-05	52.78	F-box family protein	[more]

BLAST of Bhi03M002180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A078G1Z7\|A0A078G1Z7_BRANA	2.0e-06	72.50	BnaC05g08600D protein OS=Brassica napus OX=3708 GN=BnaC05g08600D PE=4 SV=1	[more]
tr\|A0A1J3J871\|A0A1J3J871_NOCCA	2.6e-06	70.00	F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR17536_c0_g1_i...	[more]
tr\|A0A1J3EFJ7\|A0A1J3EFJ7_NOCCA	2.6e-06	70.00	F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR6895_c0_g1_i1...	[more]
tr\|A0A1J3HCK8\|A0A1J3HCK8_NOCCA	2.6e-06	70.00	F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR1244_c0_g1_i1...	[more]
tr\|M4DTM8\|M4DTM8_BRARP	2.6e-06	70.00	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]

BLAST of Bhi03M002180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_013583517.1	3.0e-06	72.50	PREDICTED: F-box protein At1g61340-like [Brassica oleracea var. oleracea] >XP_02...	[more]
XP_009148454.1	3.9e-06	70.00	PREDICTED: F-box protein At1g61340-like isoform X1 [Brassica rapa]	[more]
XP_009148455.1	3.9e-06	70.00	PREDICTED: F-box protein At1g61340-like isoform X2 [Brassica rapa] >XP_009148456...	[more]
XP_013676166.1	3.9e-06	70.00	F-box protein At1g61340 [Brassica napus]	[more]
XP_018436068.1	3.9e-06	70.00	PREDICTED: F-box protein At1g61340-like [Raphanus sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi03G002180	Bhi03G002180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M002180.exon1	Bhi03M002180.exon1	exon
Bhi03M002180.exon2	Bhi03M002180.exon2	exon
Bhi03M002180.exon3	Bhi03M002180.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi03M002180	cds.Bhi03M002180	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi03M002180	Bhi03M002180-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 16..100
None	No IPR available	PANTHER	PTHR34049	FAMILY NOT NAMED	coord: 16..100