Bhi03M001983 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03M001983
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	F-box protein
Location	chr3 : 56323138 .. 56324465 (-)
Sequence length	858

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCACCTCTTCCATCACTTTCTTCGCCGCCGCCTTGGGAGGTGCTTCTTCTCGTCGCCGAACGCCTTGACCCCAAAACCCTGGCCACCGCCTCCTGCGTCTGCAAGTTTTGGTCCATTTCTATGGCCTCCGACCACCTTTGGGAGCCAATTTTCACCGCCAATTTCCCTTCTCTCTCTAACCTTGCTATCTCCTCCTCCGCCCCCACGTCACCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCTGCTCGTCGCCGTCCCGCTCCCTCAAAACCCACTCTCTCCCTCTCCGACCTCATCTTCGTCATTAGTATCTCTTCTACCGATAAAGATAGGTACATCGTAGGTCACGAACTGGTGGAAAAAGATAAAGGTAATTTTTTAATACGTTAAAGAAGAAATTTAGAGATGAAATTAATTTTTACAAAATATTGTTAGAAATAGATAACACATCAATAATTATGCTTTATAAGTTTTAAGAGATGTAATTTTTAAAATTAGTCGAAAACATAATTTTTTAATATTCAATTTTAAATGTAATTTCAATCTTCAAAATTAGTTTTTTTTAAAAAAAAAAAAATTAAAAACATGTTTGGAGTGATTTTAAAAATTACTCTCTAAATATACTATTAATTTTTAAATAATTATCATACGATACCTCAAACTTTTTTTGGTTTTAAAATTGGACTAAATATTCAAGAAAATTGGAGGAAGAAAAGAATAAATAAATTTTCAAAACAATAAATTATTACATTTTAGAAACCATAAAGAATAGGAAATCAAACGGAATAGATTCGAATATTTTAGAATTCGAGTATAATTGTTCTCTATGAAAATTTCTAGCTCCGCCACAGTCCATCCTCACCGTCGTGAAGCACGGTGGGGAGCTAGCCGTGGATCGGAACGGGCTATTCAAATTCGACATAAATCTTGACGGGGACAATGGCAATAAAGGGGGTCCGGTGGTGATCGGAGGTCGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGAGGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCAAGAGCCGACGGGTGGTTCTCGGAGGAGCTTCCGGCAGCGGGGTGCTGCTCGAACGTCGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGTTGCGTGGGAACAATGGAGGAGGAAGCAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTATTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCGAGTGTGTAA

mRNA sequence

ATGGCACCACCTCTTCCATCACTTTCTTCGCCGCCGCCTTGGGAGGTGCTTCTTCTCGTCGCCGAACGCCTTGACCCCAAAACCCTGGCCACCGCCTCCTGCGTCTGCAAGTTTTGGTCCATTTCTATGGCCTCCGACCACCTTTGGGAGCCAATTTTCACCGCCAATTTCCCTTCTCTCTCTAACCTTGCTATCTCCTCCTCCGCCCCCACGTCACCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCTGCTCGTCGCCGTCCCGCTCCCTCAAAACCCACTCTCTCCCTCTCCGACCTCATCTTCGTCATTAGTATCTCTTCTACCGATAAAGATAGGTACATCGTAGGTCACGAACTGGTGGAAAAAGATAAAGCTCCGCCACAGTCCATCCTCACCGTCGTGAAGCACGGTGGGGAGCTAGCCGTGGATCGGAACGGGCTATTCAAATTCGACATAAATCTTGACGGGGACAATGGCAATAAAGGGGGTCCGGTGGTGATCGGAGGTCGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGAGGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCAAGAGCCGACGGGTGGTTCTCGGAGGAGCTTCCGGCAGCGGGGTGCTGCTCGAACGTCGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGTTGCGTGGGAACAATGGAGGAGGAAGCAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTATTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCGAGTGTGTAA

Coding sequence (CDS)

ATGGCACCACCTCTTCCATCACTTTCTTCGCCGCCGCCTTGGGAGGTGCTTCTTCTCGTCGCCGAACGCCTTGACCCCAAAACCCTGGCCACCGCCTCCTGCGTCTGCAAGTTTTGGTCCATTTCTATGGCCTCCGACCACCTTTGGGAGCCAATTTTCACCGCCAATTTCCCTTCTCTCTCTAACCTTGCTATCTCCTCCTCCGCCCCCACGTCACCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCTGCTCGTCGCCGTCCCGCTCCCTCAAAACCCACTCTCTCCCTCTCCGACCTCATCTTCGTCATTAGTATCTCTTCTACCGATAAAGATAGGTACATCGTAGGTCACGAACTGGTGGAAAAAGATAAAGCTCCGCCACAGTCCATCCTCACCGTCGTGAAGCACGGTGGGGAGCTAGCCGTGGATCGGAACGGGCTATTCAAATTCGACATAAATCTTGACGGGGACAATGGCAATAAAGGGGGTCCGGTGGTGATCGGAGGTCGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGAGGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCAAGAGCCGACGGGTGGTTCTCGGAGGAGCTTCCGGCAGCGGGGTGCTGCTCGAACGTCGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGTTGCGTGGGAACAATGGAGGAGGAAGCAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTATTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCGAGTGTGTAA

Protein sequence

MAPPLPSLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRYIVGHELVEKDKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV

Homology

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BLAST of Bhi03M001983 vs. Swiss-Prot
Match: sp|Q5EAF6|FB336_ARATH (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.3e-21
Identity = 80/273 (29.30%), Postives = 131/273 (47.99%), Query Frame = 0


Query: 10  SPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAISSSA 69
           SPP WE+L LV   +DP++LA ASCV   WS   +S+ LW+ +  A   S+   AI+   
Sbjct: 51  SPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSL-PATRHSIFAKAITKEG 110

Query: 70  PTSPPVSFRRLFGLGHTAAARRR-PAPSKPTLSLSDLIFVISISSTDKDRYIVGHELVEK 129
                +S++RL     +AA RRR   P++P +SLSDL+F++ +S+  K+           
Sbjct: 111 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE----------- 170

Query: 130 DKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVVWNLVLE 189
                     VVK G +L    N  F+ + ++  D+G           ++V + WN+VL 
Sbjct: 171 --------AVVVKQGKDLVFGSNERFQIEADV-RDSG------FTADMKDVSMSWNVVLR 230

Query: 190 GWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSG-GIVADLKLGLRGNNGGGS 249
            +  +F M E    +       GWF++ELP  G  +    G  +V ++K          +
Sbjct: 231 NYERMFLMSET--VIKSLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF-------N 285

Query: 250 KVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFL 281
           +  ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 291 EDVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

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BLAST of Bhi03M001983 vs. TAIR10
Match: AT5G04010.1 (F-box family protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-22
Identity = 80/273 (29.30%), Postives = 131/273 (47.99%), Query Frame = 0


Query: 10  SPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAISSSA 69
           SPP WE+L LV   +DP++LA ASCV   WS   +S+ LW+ +  A   S+   AI+   
Sbjct: 51  SPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSL-PATRHSIFAKAITKEG 110

Query: 70  PTSPPVSFRRLFGLGHTAAARRR-PAPSKPTLSLSDLIFVISISSTDKDRYIVGHELVEK 129
                +S++RL     +AA RRR   P++P +SLSDL+F++ +S+  K+           
Sbjct: 111 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE----------- 170

Query: 130 DKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVVWNLVLE 189
                     VVK G +L    N  F+ + ++  D+G           ++V + WN+VL 
Sbjct: 171 --------AVVVKQGKDLVFGSNERFQIEADV-RDSG------FTADMKDVSMSWNVVLR 230

Query: 190 GWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSG-GIVADLKLGLRGNNGGGS 249
            +  +F M E    +       GWF++ELP  G  +    G  +V ++K          +
Sbjct: 231 NYERMFLMSET--VIKSLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF-------N 285

Query: 250 KVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFL 281
           +  ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 291 EDVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

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BLAST of Bhi03M001983 vs. TrEMBL
Match: tr|A0A1S3BLJ1|A0A1S3BLJ1_CUCME (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.9e-124
Identity = 239/289 (82.70%), Postives = 253/289 (87.54%), Query Frame = 0


Query: 1   MAPPLPSL-SSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPS 60
           MA PLPSL SSPPPWEV+LLVAERLDPKTLATASCVCK WS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LSNLAISSSAPT-SPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDR 120
           L NLA   SAPT SPPVSFRRLFGLG+ AAARRRPA  KPTLSLSDL+FVISIS TDKD+
Sbjct: 61  LFNLA---SAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQ 120

Query: 121 YIVGHELVEK-DKAP-PQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGR 180
            I+  + V K +KAP PQS LTVVKHG EL V+RNGLFKFDINL   N N   PVVIG R
Sbjct: 121 SIIACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINL---NENGAAPVVIGAR 180

Query: 181 EEVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLK 240
           EEVEVVWN+VLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCC N VSGGIV DL+
Sbjct: 181 EEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLR 240

Query: 241 LGLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 286
           LGL GN GG +KVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLFNA+V
Sbjct: 241 LGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

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BLAST of Bhi03M001983 vs. TrEMBL
Match: tr|A0A0A0LDE5|A0A0A0LDE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.9e-123
Identity = 236/288 (81.94%), Postives = 256/288 (88.89%), Query Frame = 0


Query: 1   MAPPLPSL-SSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPS 60
           MA PLPSL SSPPPWEV+LLVAERLDPKTLATASCVCK WS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LSNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRY 120
           L NLA  ++  TSP VSFRRLFGLG+ AAARRRPA SKP+LSLSDL+FVISIS T+KDR 
Sbjct: 61  LFNLA--TAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRC 120

Query: 121 IVGHELVEK-DKAP-PQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGRE 180
            +  + V K +KAP PQS LT+VKHG EL VDRNGLFKFDINL+ +NG+ G PVVIG RE
Sbjct: 121 SIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLN-ENGD-GAPVVIGARE 180

Query: 181 EVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKL 240
           EVEVVWN+VLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCC NVVSGGIV DL+L
Sbjct: 181 EVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRL 240

Query: 241 GLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 286
           GL GN GG +KVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLFNA+V
Sbjct: 241 GLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 284

[Close]

BLAST of Bhi03M001983 vs. TrEMBL
Match: tr|A0A2N9IPU8|A0A2N9IPU8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54267 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.0e-69
Identity = 135/279 (48.39%), Postives = 188/279 (67.38%), Query Frame = 0


Query: 8   LSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAISS 67
           +S  PPWEVL+LVA+ L+PKT+A ASCVCK WSISM+SD+LW+PI   +FPSLSNL++  
Sbjct: 4   ISLTPPWEVLVLVAQHLEPKTVAIASCVCKSWSISMSSDYLWKPICNTHFPSLSNLSVHV 63

Query: 68  SAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRYIVGHELVE 127
                   S+ RL+ +GHTAA RR  A  KP ++L++LIF I+I +              
Sbjct: 64  DVHVP---SYHRLYAIGHTAAKRRVQASCKPRVALNNLIFTINIHTKS------------ 123

Query: 128 KDKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVVWNLVL 187
                  +I+T+ K G EL +D NG+FKFD  ++ +        ++   E+V++ WN++L
Sbjct: 124 ------SNIVTLAKPGEELIIDPNGVFKFDFKVNYERS-----TMVETLEDVKITWNVIL 183

Query: 188 EGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGL-RGNNGGG 247
            GW+GVFTM++C G+V  +P A+GWFS+ELP+ GCCS+ V+ GIV+DLKLG       GG
Sbjct: 184 SGWKGVFTMMDCEGKVSFSPGAEGWFSDELPSPGCCSSAVASGIVSDLKLGFCSRRESGG 243

Query: 248 SKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 286
            KVR++ VSVG++SIV+WRYVS++DGL YLQHFL    V
Sbjct: 244 GKVRVDKVSVGILSIVNWRYVSVEDGLRYLQHFLVPCDV 256

[Close]

BLAST of Bhi03M001983 vs. TrEMBL
Match: tr|A0A2P4IXJ8|A0A2P4IXJ8_QUESU (Putative f-box protein OS=Quercus suber OX=58331 GN=CFP56_68408 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66
Identity = 136/270 (50.37%), Postives = 172/270 (63.70%), Query Frame = 0


Query: 12  PPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAISSSAPT 71
           PPWEVL LVA  LDPKTLA ASCVCK W ISM+SDHLW+PI   +FP   NL  +     
Sbjct: 10  PPWEVLALVAHYLDPKTLAIASCVCKSWFISMSSDHLWKPICNTHFP---NLHFTDLGEQ 69

Query: 72  SPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRYIVGHELVEKDKA 131
              V + RL+ +GH AA RR   P KP LSL+DL+F I+I                  + 
Sbjct: 70  VHHVPYHRLYAIGHAAAKRRVQTPCKPKLSLNDLVFSINI------------------RT 129

Query: 132 PPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVVWNLVLEGWR 191
              +I+T+ K G EL  D N +FKFD+    DN N     V    ++V++ WN+VL GW+
Sbjct: 130 KSSNIVTIAKPGEELIFDPNEVFKFDV----DNVNYECSSVAAALQDVKITWNVVLSGWK 189

Query: 192 GVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGLRGNNGGG-SKVR 251
           GVFTM+ C G+V  +P A+GWFSEELP+ GCCS  V+ G+VADLKLG       G  KV+
Sbjct: 190 GVFTMMNCEGKVSFSPGAEGWFSEELPSPGCCSGTVASGVVADLKLGFCSRRESGVGKVK 249

Query: 252 IESVSVGMMSIVSWRYVSLDDGLMYLQHFL 281
           ++ VSVG++SIV+WRYVS+DDGL YLQHFL
Sbjct: 250 VDKVSVGILSIVNWRYVSVDDGLRYLQHFL 254

[Close]

BLAST of Bhi03M001983 vs. TrEMBL
Match: tr|A0A2I4ECR4|A0A2I4ECR4_9ROSI (probable F-box protein At5g04010 OS=Juglans regia OX=51240 GN=LOC108988393 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 135/282 (47.87%), Postives = 182/282 (64.54%), Query Frame = 0


Query: 7   SLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAIS 66
           S +  PPWEVL LVA  LDP+TLA ASCVCK W+ISM+ D LW+P+   +FPSLS++   
Sbjct: 6   SATISPPWEVLALVAHHLDPRTLAIASCVCKSWTISMSLDLLWKPLCNTHFPSLSDIHF- 65

Query: 67  SSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRYIVGHELV 126
               T   V + RL+ +GHTAA RR   P KP LSL  LIF I+I               
Sbjct: 66  ----TDLTVPYHRLYAIGHTAARRRLQTPRKPRLSLDSLIFAINI--------------- 125

Query: 127 EKDKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVVWNLV 186
              +     I ++ KHG EL VD  G+FKFD++++ ++       +     +V++ WN++
Sbjct: 126 ---RTRTSHIASLEKHGQELQVDPGGVFKFDVDVNYESPAS----MFDDLGDVKITWNVI 185

Query: 187 LEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGL---RGNN 246
           L GWRG+FTM++C G+V  +P A+GWFSEELP+ GCCS+ V+ G+VAD+KLG    R  +
Sbjct: 186 LRGWRGIFTMMDCEGKVSFSPGAEGWFSEELPSPGCCSSEVASGMVADVKLGFCGRRSES 245

Query: 247 GGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 286
           GG  KVR E VSVG++SIV+WRYV++DDGL YLQHFL  + V
Sbjct: 246 GGVRKVRAEKVSVGILSIVNWRYVNMDDGLRYLQHFLVPSDV 260

[Close]

BLAST of Bhi03M001983 vs. NCBI nr
Match: XP_008449214.1 (PREDICTED: probable F-box protein At5g04010 [Cucumis melo])

HSP 1 Score: 453.8 bits (1166), Expect = 4.5e-124
Identity = 239/289 (82.70%), Postives = 253/289 (87.54%), Query Frame = 0


Query: 1   MAPPLPSL-SSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPS 60
           MA PLPSL SSPPPWEV+LLVAERLDPKTLATASCVCK WS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LSNLAISSSAPT-SPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDR 120
           L NLA   SAPT SPPVSFRRLFGLG+ AAARRRPA  KPTLSLSDL+FVISIS TDKD+
Sbjct: 61  LFNLA---SAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQ 120

Query: 121 YIVGHELVEK-DKAP-PQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGR 180
            I+  + V K +KAP PQS LTVVKHG EL V+RNGLFKFDINL   N N   PVVIG R
Sbjct: 121 SIIACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINL---NENGAAPVVIGAR 180

Query: 181 EEVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLK 240
           EEVEVVWN+VLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCC N VSGGIV DL+
Sbjct: 181 EEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLR 240

Query: 241 LGLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 286
           LGL GN GG +KVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLFNA+V
Sbjct: 241 LGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

[Close]

BLAST of Bhi03M001983 vs. NCBI nr
Match: KGN58086.1 (hypothetical protein Csa_3G497390 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123
Identity = 236/288 (81.94%), Postives = 256/288 (88.89%), Query Frame = 0


Query: 1   MAPPLPSL-SSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPS 60
           MA PLPSL SSPPPWEV+LLVAERLDPKTLATASCVCK WS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LSNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRY 120
           L NLA  ++  TSP VSFRRLFGLG+ AAARRRPA SKP+LSLSDL+FVISIS T+KDR 
Sbjct: 61  LFNLA--TAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRC 120

Query: 121 IVGHELVEK-DKAP-PQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGRE 180
            +  + V K +KAP PQS LT+VKHG EL VDRNGLFKFDINL+ +NG+ G PVVIG RE
Sbjct: 121 SIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLN-ENGD-GAPVVIGARE 180

Query: 181 EVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKL 240
           EVEVVWN+VLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCC NVVSGGIV DL+L
Sbjct: 181 EVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRL 240

Query: 241 GLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 286
           GL GN GG +KVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLFNA+V
Sbjct: 241 GLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 284

[Close]

BLAST of Bhi03M001983 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422.2 bits (1084), Expect = 1.4e-114
Identity = 222/285 (77.89%), Postives = 240/285 (84.21%), Query Frame = 0


Query: 1   MAPPLPSLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSL 60
           MA  L    SPPPWEVLLLVAERLDP+TLATASCVCK WSISMAS++LWEPIF+A FPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  SNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDK-DRY 120
           +NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSKP L LSDL+FVIS+SSTDK DR 
Sbjct: 61  TNLA-ASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRC 120

Query: 121 IVGHELVEKDKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEV 180
           IVG    +++K  P+ + TVVKHGGELAVDRNGLFKFDIN+     N    VVIG  EEV
Sbjct: 121 IVGAGAKKEEKDVPEPMFTVVKHGGELAVDRNGLFKFDINV----SNSDEVVVIGAGEEV 180

Query: 181 EVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGL 240
            VVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCC   VSGGIVADLKLG+
Sbjct: 181 GVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGV 240

Query: 241 RGNNGGG--SKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFN 283
             N  GG   KVRIESVSVGMMS++SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 CKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Bhi03M001983 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 415.6 bits (1067), Expect = 1.3e-112
Identity = 220/285 (77.19%), Postives = 241/285 (84.56%), Query Frame = 0


Query: 1   MAPPLPSLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSL 60
           MA  L    SPPPWEVLLLVAERLDP+TLATASCVCK WSISMAS++LWEPIF+A FPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  SNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDK-DRY 120
           +NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSKP LSLSDL+FVIS+S TDK +  
Sbjct: 61  TNLA-ASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGC 120

Query: 121 IVGHELVEKDKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEV 180
           IV     +++K  P+ + TVVKHGGELAVDRN LFKFDIN+   NG++   VVIG  EEV
Sbjct: 121 IVSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINV--SNGDE--VVVIGAGEEV 180

Query: 181 EVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGL 240
           EVVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCC   VSGGIVADLKLG+
Sbjct: 181 EVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGV 240

Query: 241 RGNNGGG--SKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFN 283
             N  GG   KVRIESVSVGMMS++SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 CKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Bhi03M001983 vs. NCBI nr
Match: XP_022966422.1 (probable F-box protein At5g04010 [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 1.5e-111
Identity = 218/286 (76.22%), Postives = 237/286 (82.87%), Query Frame = 0


Query: 1   MAPPLPSLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSL 60
           MA  L    SPPPWEVLLLVAERLDP+TLATASCVCK WSISMAS+HLWEPIF+A FPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSL 60

Query: 61  SNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDK-DRY 120
           +NLA +SSA  SPP+SF RLFGLGHTAAARRRPAPSKP LSLSDLIFVIS+S TDK D  
Sbjct: 61  TNLA-ASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGC 120

Query: 121 IVGHELVEKDKAPPQSILTVVKHGGELAVDRNGLFKFDINLD-GDNGNKGGPVVIGGREE 180
           IVG    +++K  P+ + T+VKHGGEL VDRNGLFKFDIN+  GD       VVIG   E
Sbjct: 121 IVGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKFDINVSKGDEA-----VVIGAGGE 180

Query: 181 VEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLG 240
           VEVVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCC   VSGGIVADLKLG
Sbjct: 181 VEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLG 240

Query: 241 LRGNNGGG--SKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFN 283
           +  N  GG   +VRIESVSVGMMS++SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 VCKNGEGGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

The following BLAST results are available for this feature:

BLAST of Bhi03M001983 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5EAF6\|FB336_ARATH	6.3e-21	29.30	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of Bhi03M001983 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04010.1	3.5e-22	29.30	F-box family protein	[more]

BLAST of Bhi03M001983 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLJ1\|A0A1S3BLJ1_CUCME	2.9e-124	82.70	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
tr\|A0A0A0LDE5\|A0A0A0LDE5_CUCSA	1.9e-123	81.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1	[more]
tr\|A0A2N9IPU8\|A0A2N9IPU8_FAGSY	6.0e-69	48.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54267 PE=4 SV=1	[more]
tr\|A0A2P4IXJ8\|A0A2P4IXJ8_QUESU	2.1e-66	50.37	Putative f-box protein OS=Quercus suber OX=58331 GN=CFP56_68408 PE=4 SV=1	[more]
tr\|A0A2I4ECR4\|A0A2I4ECR4_9ROSI	2.8e-66	47.87	probable F-box protein At5g04010 OS=Juglans regia OX=51240 GN=LOC108988393 PE=4 ...	[more]

BLAST of Bhi03M001983 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449214.1	4.5e-124	82.70	PREDICTED: probable F-box protein At5g04010 [Cucumis melo]	[more]
KGN58086.1	2.9e-123	81.94	hypothetical protein Csa_3G497390 [Cucumis sativus]	[more]
XP_023518459.1	1.4e-114	77.89	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]
XP_022925168.1	1.3e-112	77.19	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
XP_022966422.1	1.5e-111	76.22	probable F-box protein At5g04010 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR001810	F-box_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi03G001983	Bhi03G001983	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M001983.exon2	Bhi03M001983.exon2	exon
Bhi03M001983.exon1	Bhi03M001983.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi03M001983	cds.Bhi03M001983	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi03M001983	Bhi03M001983-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 10..98 e-value: 1.6E-7 score: 33.1
None	No IPR available	PANTHER	PTHR12874:SF13	SUBFAMILY NOT NAMED	coord: 8..281
None	No IPR available	PANTHER	PTHR12874	FAMILY NOT NAMED	coord: 8..281
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 13..52 e-value: 1.7E-5 score: 24.4
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 13..69