Bhi03M001943 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03M001943
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	ribosomal RNA-processing protein 17
Location	chr3 : 53917996 .. 53922040 (+)
Sequence length	1411

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAACTCTTTCGGGAGCTTCTGTTAGCTATTGTGCGGCACTTGTTCCCGCTCATGAACAAGTCAGCCATTTCGAATATGGACTGCGAGGTATTCAAATAAGCTCTTAAAGAATAATTTCTCAAACGTTGTGATTAAAATATATATCTTAAAACTAACAAAAACCTAGACAAAGAAAGGGAAAAACTACACACGCAGCCGTGGGAACAAAAACTGAGGCGCCGGAATCTGGAGGTAAAATCGCAAGGTGTGGGTCTTTGGTCTAGAGGGCGGAACTCGCCGGCGGTGGGTCTCGGTTTCGGAGGTCAGAGTGGTGGGTTTTTTGGGTCTCAGTTCAGCGGCGACGGGGCAATTACTGGCGTGTGGGTTTTGGTCAAGAGGCTGGGCAAAATCGTGGGGCACAATTTGAAGGGCCGGACAGTCTAAGACAGTGACTGAGAGGCGGCGGTAAAGTCAAGTTTGTTATTCTCTTCCAAGAGAATGTTACAGTTACGGGGCGGTGCCATGGTGAGGAACGATGGAGAAGAAGGGGCCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGTTTTCCTTCAAACTAAGCACGAACTTGATTAATCGGTTTATTTGGACTTTTGTTTGATGTTAATTGTTGTTTTTCTTAGGGACTTTGTTACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAAAGAAGCAACAAGAGGAAGCTATCCGGCGGAAGCGCATCGAAGCACGCAAAAAGGTTTGGAAGACTTTTCTAATTTTGAGAAGGAATTGCAGAAAACATATAGCTATTTTGTCCTTCGGTTGACAGCTTTGTAGAGTTTATATTCAGGCAACAGATGAGATTTCCCAACTTGTAAATTTTCTGTGAATAATACCACTTTTCTACCTTCAATGAACTTAGAATAGAGCATGATGAAATTTTTTTCTGGTAGATTGTTGATTTCCCAACACAGCTGCTGAATCATTAGGATTCTCAGGGGTAGAAAGAGAAGAGAGAACCAAACACATCATTAGTTTCAGGAAAAGTTAATTTTCTGCAGACTATGGAGATGAGGCTGGCTGTAAATTAAAGATGTCAATGTTGTTCTTCCACCTTGGATTTGTCCAAGGTTATATGAATTTTTTTCAATCCTTAGTTGCAGATGTCACATCGAGTATTTAGGAGACTTGCACTTATCTCTCTGATAATTACAAAAGGCCTTAGCCATTTAGGCTCATTATGAAGTATTGGATCTAATAACCTATGAAAACTCTCCCTTAGATCTCTCAACACCTCCAAAACGTCTACCATTTCTCCCAAGCCATATTGATGGAAGAATGATGAAGAAAGAACTAAGTAGCTTGCCAAAGAATTTAACCCTTCTCCTTGTAAGGGGGAACAACAAAAACTCCTCCATCAAACCCTGCAAAACCTGTTTCTTCACTTAAGCTCAAGCACAAGAATATAAAGCTTATCTATCATAAGGATTATAACTATGCTTTAAGATTTTGGCTACACTTCTGCTGCAGATGATACAAACGATGTTAAGGGAGAGTTAAGGGAAGGTGATTTAAGTTGTGAGAGATTGCCTCCAGCTTTTCTGTTACTTTTAATACTGAATCTCTCTAAAGGTTTATTTTTTTCCTTTTTTTTTTTTTTTTTTTGTGTTGCCTCAATGCTTGTAGGCATCATGTATCCTTTAGATAAAATGCTGCAAATTAGTGATCATGTATGTGTTGTAATGAAGAATTTATAGCGTGAGTTGTGTAAAATGTCATTGATTAGAGGAAACAAGGAAGAGAACAGCCTTTGGTGCATCTATCTATTTCTTCTATAGCATCTGAGACATATTTTCTAAAAGTCCTAAATAATCCTGCAGAGAAGATTAGAAAAAGATCTGGTGCTGTATGGCGGTGTTCTTCCAGCTGACAGGCCGGTTGATGAAGAGAATGATGATCACGAGGAGGGGGAGGAGGATGAGGAAGAGAAGCCATTAGCACCATTTTCTGGTATTTTACTAACAATTGTACATTAAAATATCAAGTGCATGTGATCAGCCATCTGCCCTAGCTTGCTTAGAACACATGTCTGTTCAATTAAAATGGCATATAATAGTTATAAGTTCTTCTCTTGTACAAGTGGAAAAACGAAGTATCCATCTAAAAAAACCAGATCAGATATTATTTATGTTCATAAGGAAGCTAAAAGTCAGTTATATATGAAAAATAAGTAGGAAAGTTGATAAAATTGATAACGATATACAGTGTTTTAAAAAGCCCTCCTGGGTGTAGGTTTGGCGCTCGCCTTGGAAAGGTGAGGCTCACAAAATAAAACGTGCCTCAGGTGCGTGCCTTTGTTGAAGGCCCAAGGCTCAAAGCCCTGAGCCTTGTGGCTTTTTCATTATTTTTAGAAATTAGTAATAATTAAGGATTTCCTTCTTTATTAACTAAAAGAATCAAGTTTACTAAGGCTAAAGGCAAAATTTCTTATATTTGTTTTGTTTGTTTTTTTGGTTGTTGTTTTGTTTTGTTTTGTTTTTTAGCCTTGTGGCTTTTTCATTATTTTTAGAAATTAGTAATAATTAAGGATTTCCTTCTTTATTAACTAAAAGAAGGAAGTTTACTAAGGCTAAAGGCAAAATTTCTTATATTTGTTTTTTTTTTTGGTTGTTGTTTTGTTTTGTTTTGTTTTTTCATATTTCCACTTCAACTATGCTCTCTTTTTAATGTAACATTAATATATAGTGCGCCTCACCAAAAAAAAGAAAAAAAAGTCCGTATCTTTTTGTGTGCCTTGCGCCTAGGCTCTATAGGACCATTGCGCCTTAGTGCGTCTTGGGCATTTAAAAACATTGATGATATGCATTCTTTTAGAAAAAAAAGACGGTTTTCATTTGTATTAGCTCCAAAACTTGTTTCAATAATTAATCACTGGAAGCTAGGAATTGATATTGATACGAGACATGGATATGATGCGATATGTACATACTGACATGTAATGTTTTTTTTCTAAATCTAGGACACAGACGTGTTTATTAAAACATACATTTTTTTAAAAAATGTCATCTTTAAATATGAGGAAATTCACTGTCAATGAGTTTATGCAATTATATGCTAAAAAAAATTAGTTTGATGTATTTCACTGTTAGGTTTTAATAGTCTTGTCCTATGTGTCTATTTATTATACATGAAATGTGTTTGATATGTGTGTAACAAGTTGGCCCCGTTTTGAGTTTGTGTTACGAATGTCTAAAACACATCTATTGCACCAACAAGTACTGATACATGTGCAACAAGTGTTAGAGTGTGCAAGTGTCCAACACACTAGCCAAGTTAAAGTGTCTGTACTTCTTAGACTGGAAGTGTAAGTATCATCTATGTTGCAGAACAGCTACATGTTGCATTCTGTTGATCCAAACGTGCTTTTGGTTTTCTCTGTAGAGACGACAACGTATGACAGTGGAAATATCAAAGTCACTGTGATAACAAGTGAAGTATCTCGGGAAGAAGAAATCGATCCCATTGACAAGCCACAGACAGCAACAACCCAATTGTTCGCAAAGGATAAGAAGCATAACCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAAACAGAGGTCAAGGCCAAAAGCCCGAAGTAAAAGAGACAAGAGGAAAGGAAAGAAAAAGAAATAGGTAATTATACTAAGAATTTTAGCTCTTTGCTAAATGTTCAATGTGATATCATTTATTCGTTATCTCATGAGAATTACGTAGTGATCTTGAGCAATGGGTGTAGGGACTTTGAGGGTTTTATTCGTTATCTCATGAGAATTACGTTGTGATCTTGAGCAATGGGTGTAGGGGGGACATTGAGGGTTTTGTATTACTTCGTACAAGCTTGGCCATTTTGCGAACTGAATGTGCAACTTTTATTTTTATGAGAAGCTGAAATGATTCATTCAGAACTCCAAGAAGAAAAAATAACAGATCATCTAAGCATAAAA

mRNA sequence

ACCAACTCTTTCGGGAGCTTCTGTTAGCTATTGTGCGGCACTTGTTCCCGCTCATGAACAAGTCAGCCATTTCGAATATGGACTGCGAGGTATTCAAATAAGCTCTTAAAGAATAATTTCTCAAACGTTGTGATTAAAATATATATCTTAAAACTAACAAAAACCTAGACAAAGAAAGGGAAAAACTACACACGCAGCCGTGGGAACAAAAACTGAGGCGCCGGAATCTGGAGGTAAAATCGCAAGGTGTGGGTCTTTGGTCTAGAGGGCGGAACTCGCCGGCGGTGGGTCTCGGTTTCGGAGGTCAGAGTGGTGGGTTTTTTGGGTCTCAGTTCAGCGGCGACGGGGCAATTACTGGCGTGTGGGTTTTGGTCAAGAGGCTGGGCAAAATCGTGGGGCACAATTTGAAGGGCCGGACAGTCTAAGACAGTGACTGAGAGGCGGCGGTAAAGTCAAGTTTGTTATTCTCTTCCAAGAGAATGTTACAGTTACGGGGCGGTGCCATGGTGAGGAACGATGGAGAAGAAGGGGCCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGGACTTTGTTACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAAAGAAGCAACAAGAGGAAGCTATCCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAGATTAGAAAAAGATCTGGTGCTGTATGGCGGTGTTCTTCCAGCTGACAGGCCGGTTGATGAAGAGAATGATGATCACGAGGAGGGGGAGGAGGATGAGGAAGAGAAGCCATTAGCACCATTTTCTGAGACGACAACGTATGACAGTGGAAATATCAAAGTCACTGTGATAACAAGTGAAGTATCTCGGGAAGAAGAAATCGATCCCATTGACAAGCCACAGACAGCAACAACCCAATTGTTCGCAAAGGATAAGAAGCATAACCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAAACAGAGGTCAAGGCCAAAAGCCCGAAGTAAAAGAGACAAGAGGAAAGGAAAGAAAAAGAAATAGGTAATTATACTAAGAATTTTAGCTCTTTGCTAAATGTTCAATGTGATATCATTTATTCGTTATCTCATGAGAATTACGTAGTGATCTTGAGCAATGGGTGTAGGGACTTTGAGGGTTTTATTCGTTATCTCATGAGAATTACGTTGTGATCTTGAGCAATGGGTGTAGGGGGGACATTGAGGGTTTTGTATTACTTCGTACAAGCTTGGCCATTTTGCGAACTGAATGTGCAACTTTTATTTTTATGAGAAGCTGAAATGATTCATTCAGAACTCCAAGAAGAAAAAATAACAGATCATCTAAGCATAAAA

Coding sequence (CDS)

ATGTTACAGTTACGGGGCGGTGCCATGGTGAGGAACGATGGAGAAGAAGGGGCCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGGACTTTGTTACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAAAGAAGCAACAAGAGGAAGCTATCCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAGATTAGAAAAAGATCTGGTGCTGTATGGCGGTGTTCTTCCAGCTGACAGGCCGGTTGATGAAGAGAATGATGATCACGAGGAGGGGGAGGAGGATGAGGAAGAGAAGCCATTAGCACCATTTTCTGAGACGACAACGTATGACAGTGGAAATATCAAAGTCACTGTGATAACAAGTGAAGTATCTCGGGAAGAAGAAATCGATCCCATTGACAAGCCACAGACAGCAACAACCCAATTGTTCGCAAAGGATAAGAAGCATAACCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAAACAGAGGTCAAGGCCAAAAGCCCGAAGTAAAAGAGACAAGAGGAAAGGAAAGAAAAAGAAATAG

Protein sequence

MLQLRGGAMVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRKEAKKQQEEAIRRKRIEARKKRRLEKDLVLYGGVLPADRPVDEENDDHEEGEEDEEEKPLAPFSETTTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAKQRSRPKARSKRDKRKGKKKK

Homology

[Close]

BLAST of Bhi03M001943 vs. TAIR10
Match: AT1G11240.1 (Nucleolar protein 12 (InterPro:IPR019186))

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12
Identity = 93/150 (62.00%), Postives = 105/150 (70.00%), Query Frame = 0


Query: 15  EEGAELAQP-HARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXXXXXXX 74
           EE   LA P  ARHI KRA +NK+L+VSF+EKDL+DFVTGFHKXXXXXXXXXXXXXXXXX
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKXXXXXXXXXXXXXXXXX 67

Query: 75  XXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSETTTYDS 134
           XXXX             V   G        XXXXXXXXXXXXXXXXXX      TT YD+
Sbjct: 68  XXXXIEARKNRKLEELMVAGNG-----EDNXXXXXXXXXXXXXXXXXXXXXXXATTMYDT 127

Query: 135 GNIKVTVITSEVSREEEIDPIDKPQTATTQ 164
           G +KVTV TSE+SREEE +PI K +T +T+
Sbjct: 128 GELKVTVTTSEISREEE-EPIRKEKTQSTE 151

[Close]

BLAST of Bhi03M001943 vs. TrEMBL
Match: tr|A0A1S3C1A3|A0A1S3C1A3_CUCME (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.6e-49
Identity = 164/198 (82.83%), Postives = 171/198 (86.36%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+NDGEEG ELAQPHARHIKKRAL+NKALSVSFNEKDLRD+VTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXXX     VLYGGVLPADR       XXXXXXXXXXXX LAPFSE 
Sbjct: 61  XXXXXXXXXXXXXXXXXLEKDLVLYGGVLPADR----AVDXXXXXXXXXXXXPLAPFSEA 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAKQR 188
            TYD+GN+KVTV TSEVSRE EIDPIDKPQTA  QL  KDKKHNLP+TKKK FKKVAKQR
Sbjct: 121 RTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQR 180

Query: 189 SRPXXXXXXXXXXGKKKK 207
           SRP  XXXXXXX G+KKK
Sbjct: 181 SRPKLXXXXXXXKGRKKK 194

[Close]

BLAST of Bhi03M001943 vs. TrEMBL
Match: tr|A0A0A0KYB4|A0A0A0KYB4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.2e-48
Identity = 144/200 (72.00%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXX      VL+GGVLPADR                    LAP SE 
Sbjct: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADR----AVDDQNDDQGNEEEEPLAPLSEA 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTA--TTQLFAKDKKHNLPVTKKKPFKKVAK 188
           TTYD+GN+KVTV TSEVSRE+EIDPIDKPQTA  T QL  KDKKHNLP+TKKK FKKVAK
Sbjct: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAK 180

Query: 189 QRSRPXXXXXXXXXXGKKKK 207
           QR RP          G+KKK
Sbjct: 181 QRGRPKLRSKRDKKKGRKKK 196

[Close]

BLAST of Bhi03M001943 vs. TrEMBL
Match: tr|F6H7U1|F6H7U1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0181g00240 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 107/192 (55.73%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 15  EEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXXXXXXXX 74
           EEG +   PHA+HIKKRALRNKALSVSFNEKDLRDFV GFHK  XXXXXXXXXXXXXXXX
Sbjct: 7   EEGGQPRPPHAKHIKKRALRNKALSVSFNEKDLRDFVGGFHKRKXXXXXXXXXXXXXXXX 66

Query: 75  XXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSETTTYDSG 134
           XXXXXXXXXXXX    V YGG  P                       +A  S TT YD+G
Sbjct: 67  XXXXXXXXXXXXERELVQYGGA-PTATGSEPDECDDEHEQHDGVDEPIASVSGTTMYDNG 126

Query: 135 NIKVTVITSEVSREEEIDPIDKPQ-TATTQLFAKDKKHNLPVTKKKPFKKVAKQRSRPXX 194
           + KV V TSE+SREEE    +K Q  A   +    KKHN+PV+KKK FK+V + RS+P  
Sbjct: 127 DTKVIVTTSEISREEENHLTEKTQGAAPPAIVGSKKKHNVPVSKKKAFKRVVRHRSQPKL 186

Query: 195 XXXXXXXXGKKK 206
                   G KK
Sbjct: 187 QRKRDKKKGGKK 197

[Close]

BLAST of Bhi03M001943 vs. TrEMBL
Match: tr|A0A2N9GFF5|A0A2N9GFF5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29169 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.8e-22
Identity = 108/170 (63.53%), Postives = 122/170 (71.76%), Query Frame = 0


Query: 15  EEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXXXXXXXX 74
           EE   + +   RHIKKRAL+NKAL+V+FNEKDLRD+V GFHK XXXXXXXXXXXXXXXXX
Sbjct: 7   EEVIPIGRIQGRHIKKRALKNKALAVNFNEKDLRDYVNGFHKRXXXXXXXXXXXXXXXXX 66

Query: 75  XXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSETTTYDSG 134
           XXXXXXXXXXXXXX  V YGG  P D            XXXXXX   +A  S  TTYD G
Sbjct: 67  XXXXXXXXXXXXXXEMVAYGGAPPVD--GLAPDENDEYXXXXXXKEPIASISGMTTYDDG 126

Query: 135 NIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKV 185
           ++KVTV TSE+SREEEI P DK + A  +    DKKHN+PV KKK FK+V
Sbjct: 127 SMKVTVTTSEISREEEIVPSDKTEAAVPRSTGADKKHNVPVIKKKAFKRV 174

[Close]

BLAST of Bhi03M001943 vs. TrEMBL
Match: tr|A0A2P4MGN0|A0A2P4MGN0_QUESU (Nucleolar protein 12 OS=Quercus suber OX=58331 GN=CFP56_58278 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.8e-21
Identity = 122/177 (68.93%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV    EE  +LA+P  RHI+KRAL+NKALSV FNEKDLRD+VTGFHK  XXXXXXXXXX
Sbjct: 1   MVEEIEEEAVQLARPQGRHIRKRALKNKALSVKFNEKDLRDYVTGFHK--XXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXX +A  S  
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIASVSGM 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVA 186
           TTYD+GN+KVTV T E+SREEEI P DK + A  +    DKKH +PVTKKK FK+VA
Sbjct: 121 TTYDNGNMKVTVTTCEISREEEILPSDKTEAAVPRPAGADKKHTVPVTKKKAFKRVA 175

[Close]

BLAST of Bhi03M001943 vs. NCBI nr
Match: XP_008455785.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 9.9e-49
Identity = 164/198 (82.83%), Postives = 171/198 (86.36%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+NDGEEG ELAQPHARHIKKRAL+NKALSVSFNEKDLRD+VTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXXX     VLYGGVLPADR       XXXXXXXXXXXX LAPFSE 
Sbjct: 61  XXXXXXXXXXXXXXXXXLEKDLVLYGGVLPADR----AVDXXXXXXXXXXXXPLAPFSEA 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAKQR 188
            TYD+GN+KVTV TSEVSRE EIDPIDKPQTA  QL  KDKKHNLP+TKKK FKKVAKQR
Sbjct: 121 RTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQR 180

Query: 189 SRPXXXXXXXXXXGKKKK 207
           SRP  XXXXXXX G+KKK
Sbjct: 181 SRPKLXXXXXXXKGRKKK 194

[Close]

BLAST of Bhi03M001943 vs. NCBI nr
Match: XP_011653832.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis sativus] >KGN54640.1 hypothetical protein Csa_4G414400 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 144/200 (72.00%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHK XXXXXXXXXXX
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXX      VL+GGVLPADR                    LAP SE 
Sbjct: 61  XXXXXXXXXXXXXXXXKLEKDLVLHGGVLPADR----AVDDQNDDQGNEEEEPLAPLSEA 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTA--TTQLFAKDKKHNLPVTKKKPFKKVAK 188
           TTYD+GN+KVTV TSEVSRE+EIDPIDKPQTA  T QL  KDKKHNLP+TKKK FKKVAK
Sbjct: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAK 180

Query: 189 QRSRPXXXXXXXXXXGKKKK 207
           QR RP          G+KKK
Sbjct: 181 QRGRPKLRSKRDKKKGRKKK 196

[Close]

BLAST of Bhi03M001943 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 131/173 (75.72%), Postives = 141/173 (81.50%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+N+ EEG  L QPHARHIKK+AL+NKALSVSFNEKDLRD+VTGFHKXXXXXXXXXXXX
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKXXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXXXX    VL+GGVLPADRP                   LAP SET
Sbjct: 61  XXXXXXXXXXXXXXXXXXEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPF 182
           TTYDSGNIKVTV TSEV R+EEIDPIDKPQ +T+QL AKDKKH+LPVTKKKPF
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPF 173

[Close]

BLAST of Bhi03M001943 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42
Identity = 128/173 (73.99%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+N+ EEG  L QPHARHIKK+AL+NKALSVSFNEKDLRD+VTGFHKXXXXXXXXXXXX
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKXXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXXX     VL+GGVLPADRP                   LAP SET
Sbjct: 61  XXXXXXXXXXXXXXXXXIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPF 182
           T YDSGNIKVTV TSEV R+EEIDPIDKPQ +T+QL AKDKKH+LP+TKKKPF
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPF 173

[Close]

BLAST of Bhi03M001943 vs. NCBI nr
Match: XP_023003425.1 (ribosomal RNA-processing protein 17 [Cucurbita maxima])

HSP 1 Score: 180.3 bits (456), Expect = 6.9e-42
Identity = 126/173 (72.83%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKXXXXXXXXXXXX 68
           MV+N+  EG  L QP++RH+KK+AL+NKALSVSFNEKDLRD+VTGFHKXXXXXXXXXXXX
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKXXXXXXXXXXXX 60

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVLYGGVLPADRPXXXXXXXXXXXXXXXXXXXLAPFSET 128
           XXXXXXXXXXXXXXXXX     VL+GGVLPADRP                   LAP SET
Sbjct: 61  XXXXXXXXXXXXXXXXXIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPF 182
           TTYDSGNIKVTV TSEV REEEIDPIDKPQ +T+QL AKDKKH+LP+TKKKPF
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPF 173

The following BLAST results are available for this feature:

BLAST of Bhi03M001943 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi03M001943 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11240.1	1.8e-12	62.00	Nucleolar protein 12 (InterPro:IPR019186)	[more]

BLAST of Bhi03M001943 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1A3\|A0A1S3C1A3_CUCME	6.6e-49	82.83	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=4...	[more]
tr\|A0A0A0KYB4\|A0A0A0KYB4_CUCSA	7.2e-48	72.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=4 SV=1	[more]
tr\|F6H7U1\|F6H7U1_VITVI	1.8e-22	55.73	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0181g00240 PE=4 SV=...	[more]
tr\|A0A2N9GFF5\|A0A2N9GFF5_FAGSY	6.8e-22	63.53	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29169 PE=4 SV=1	[more]
tr\|A0A2P4MGN0\|A0A2P4MGN0_QUESU	5.8e-21	68.93	Nucleolar protein 12 OS=Quercus suber OX=58331 GN=CFP56_58278 PE=4 SV=1	[more]

BLAST of Bhi03M001943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455785.1	9.9e-49	82.83	PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]	[more]
XP_011653832.1	1.1e-47	72.00	PREDICTED: ribosomal RNA-processing protein 17 [Cucumis sativus] >KGN54640.1 hyp...	[more]
XP_023517913.1	1.6e-43	75.72	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]
XP_022926799.1	1.1e-42	73.99	ribosomal RNA-processing protein 17 [Cucurbita moschata]	[more]
XP_023003425.1	6.9e-42	72.83	ribosomal RNA-processing protein 17 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019186	Nucleolar_protein_12

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi03G001943	Bhi03G001943	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi03M001943	Bhi03M001943-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M001943.utr5p1	Bhi03M001943.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M001943.exon1	Bhi03M001943.exon1	exon
Bhi03M001943.exon2	Bhi03M001943.exon2	exon
Bhi03M001943.exon3	Bhi03M001943.exon3	exon
Bhi03M001943.exon4	Bhi03M001943.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi03M001943	cds.Bhi03M001943	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M001943.utr3p1	Bhi03M001943.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..142
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 30..130 e-value: 2.9E-17 score: 63.3
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	UNCHARACTERIZED	coord: 22..148