Bhi03M000063 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03M000063
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	60S ribosomal protein L18a
Location	chr3 : 1564564 .. 1566547 (-)
Sequence length	971

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACAATTGAAAAGTCCATTAGGGCTTTGGGCCAGTTGCACCAAAAATTAGAACGTATATAAAGAAGAGGGGAACTAGGGTTTTCGTTCTGTCTTAGCCGCAGAAGCCCTTCCATCTCCGAGAAAACACCAGACGGAGCGTCCAGAGCTCTAAACTCGTCGCAAATGGTTACTTTCAGGGTAAAGCTTCCCTCTTTCAACTCTAATTCTCTGGAGTCTCAACTGTCTTACTCATAACATTTGCGAAATAACTGAATGGAACTGAGACCTATCTCTTTCTCTGTGTTTTCATGGAGCCATTTGTAAGCAACGAAATGATATGGATTGTGTAATTTCTTGTTGATGTGGTTCAATTTGGGGTGGCTGTTTTTTGCAGTTCCACCAATATCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCGACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTGGGTTTTTTCATCCCTTTCCTTGATGGCATTGTTTGAAGAGTGTCATTACGTTCTTTCGCTAATCGATTAATAAAATAGAGATTCGTTGCCTGGTTCTGAAGTGTTAGCTGAACTCTATCCATCTCTGTTTTTCCTTTTCCTGCTTTGTCTTAGGTATTTTCTGCGGAAGTTGAAGAAAGTGAAGAAGAGCAACGGTCAGGTGCTCGCTATCAACGAGGTAATTTGATTTTGTCTCATGCCCCTTCTTCCAGTCAGGAGGATCTAAAATCGTCATGCCCGAGGATATTTGTCTGATCATTGATGTAGGTGGCCTTATGTTGGCTCACATAGTAAATGCTCGATCACTTTGCATGAAAAAGATTATCAGGCCTTGAGCTGAACTTTTGCTTCTTTGTAGCTTGTGACATGATTAACTTCTTGTTCAGCGTTTTATCTTTTTTGAATGTGGTAGAGAGATTAGGATGGGATTTTGATGCTTTTCCTGTGCTTGTTCAAATGTCTTTACTCCTCTAGAATGTTTTGAATAACTGTCACTGTGAATATATTGTGAGCGTAATAAACTAATGGTGGATGAGGAATTGGGTTTTCTTTGCTTTGTACTATTGATTCAATACACAATCACCCTATTCCATCAATTTGGGATGATTTGTGAAATGGGAATGTTTTTAATATAAGAGAAAAATTTGAGTCATGTTTATGAATCATTCTGATGTGTTTATACGGTGGAAGATTCTTCTGTGATTGCAATGGATTATTTGCTTAACATTTGGCTTTCTAATCTGTTTTCTGGTTTGGGTTGCTAAGTTCCAACGTATACATTAAATCATTGGCTATGTTTTCCATTTGGATTGTTCACATGGACTTGTCACTGTCTTCAGATCTTTGAGAAGAATCCAACAAAAATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATATCACAACATGTACAAGGAGTACCGGGACACCACCTTAAACGGAGCAGTGGAAGCAATGTACAATGAAATGGCTTCTCGCCATAGGGTCAGGCATCCTTGTATCCAAATCATCAAGACAGCAACCGTCCCTGCCAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCATGACTCCAAAATCAAATTCCCCTTGGTGTTCAGGACTGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAATTTGTTGCTTGTTTAAGGAATGAGAAAAAGTTATCATCAGAGTTGTCTTATTTTGAAAGCTTCGGTAGAGACCTTCCTATCAGCGGTTCTTCAACGTTTATTTTTATTTTATATTTGGGACCAGACTTTGATTTTTTGGGTTTATTGCCATGTCTTTTGGTTTCTTATGGAAGTATATCATCAGCGCCTTATGAAGTCTAATATGAATATCCATATTGTTCTCCATACTTTTGTTGCCTCCCGATGGCTGTCCGGTGATAGAAATAC

mRNA sequence

AAAGAACAATTGAAAAGTCCATTAGGGCTTTGGGCCAGTTGCACCAAAAATTAGAACGTATATAAAGAAGAGGGGAACTAGGGTTTTCGTTCTGTCTTAGCCGCAGAAGCCCTTCCATCTCCGAGAAAACACCAGACGGAGCGTCCAGAGCTCTAAACTCGTCGCAAATGGTTACTTTCAGGTTCCACCAATATCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCGACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGTTGAAGAAAGTGAAGAAGAGCAACGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAATCCAACAAAAATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATATCACAACATGTACAAGGAGTACCGGGACACCACCTTAAACGGAGCAGTGGAAGCAATGTACAATGAAATGGCTTCTCGCCATAGGGTCAGGCATCCTTGTATCCAAATCATCAAGACAGCAACCGTCCCTGCCAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCATGACTCCAAAATCAAATTCCCCTTGGTGTTCAGGACTGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAATTTGTTGCTTGTTTAAGGAATGAGAAAAAGTTATCATCAGAGTTGTCTTATTTTGAAAGCTTCGGTAGAGACCTTCCTATCAGCGGTTCTTCAACGTTTATTTTTATTTTATATTTGGGACCAGACTTTGATTTTTTGGGTTTATTGCCATGTCTTTTGGTTTCTTATGGAAGTATATCATCAGCGCCTTATGAAGTCTAATATGAATATCCATATTGTTCTCCATACTTTTGTTGCCTCCCGATGGCTGTCCGGTGATAGAAATAC

Coding sequence (CDS)

ATGGTTACTTTCAGGTTCCACCAATATCAGGTTGTGGGAAGGGCTCTCCCATCCGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTGTGGGCGACTAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGTTGAAGAAAGTGAAGAAGAGCAACGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAATCCAACAAAAATCAAGAACTACGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATATCACAACATGTACAAGGAGTACCGGGACACCACCTTAAACGGAGCAGTGGAAGCAATGTACAATGAAATGGCTTCTCGCCATAGGGTCAGGCATCCTTGTATCCAAATCATCAAGACAGCAACCGTCCCTGCCAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCATGACTCCAAAATCAAATTCCCCTTGGTGTTCAGGACTGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAA

Protein sequence

MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRHPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM

Homology

[Close]

BLAST of Bhi03M000063 vs. Swiss-Prot
Match: sp|Q9ATF5|RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.1e-92
Identity = 164/178 (92.13%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV R +RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. Swiss-Prot
Match: sp|P51418|R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 332.0 bits (850), Expect = 4.0e-90
Identity = 160/178 (89.89%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFR VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. Swiss-Prot
Match: sp|Q9LUD4|R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.4e-89
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRHPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MY EMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVFR VRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. Swiss-Prot
Match: sp|Q943F3|RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.5e-89
Identity = 158/178 (88.76%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV+R VRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. Swiss-Prot
Match: sp|Q8L7K0|R18A1_ARATH (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-87
Identity = 155/178 (87.08%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVFR VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TAIR10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 332.0 bits (850), Expect = 2.2e-91
Identity = 160/178 (89.89%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFR VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TAIR10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 328.6 bits (841), Expect = 2.5e-90
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRHPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MY EMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVFR VRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TAIR10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-88
Identity = 155/178 (87.08%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVFR VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TAIR10
Match: AT1G29970.2 (60S ribosomal protein L18A-1)

HSP 1 Score: 318.9 bits (816), Expect = 1.9e-87
Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 7   HQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEI 66
           HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAINEI
Sbjct: 141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query: 67  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRHPCIQII 126
           FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR PCIQII
Sbjct: 201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query: 127 KTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           KTATVPA LCKRESTKQFH+SKIKFPLVFR VRPPTRKLKTT+KA++PNLFM
Sbjct: 261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

[Close]

BLAST of Bhi03M000063 vs. TrEMBL
Match: tr|A0A0A0KIJ4|A0A0A0KIJ4_CUCSA (60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.9e-97
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TrEMBL
Match: tr|A0A1S3AZ74|A0A1S3AZ74_CUCME (60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.3e-97
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TrEMBL
Match: tr|A0A2I4H351|A0A2I4H351_9ROSI (60S ribosomal protein L18a OS=Juglans regia OX=51240 GN=LOC109013089 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.5e-94
Identity = 171/178 (96.07%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALP+EADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYNEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+ VRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. TrEMBL
Match: tr|A0A2H5PI13|A0A2H5PI13_CITUN (60S ribosomal protein L18a OS=Citrus unshiu OX=55188 GN=CUMW_138650 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 5.8e-94
Identity = 169/178 (94.94%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQV
Sbjct: 3   MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQV 62

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYNEMASRHRVR 
Sbjct: 63  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 122

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFR VRPPTRKL+TTYKASRPNLFM
Sbjct: 123 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180

[Close]

BLAST of Bhi03M000063 vs. TrEMBL
Match: tr|A0A067E9K7|A0A067E9K7_CITSI (60S ribosomal protein L18a OS=Citrus sinensis OX=2711 GN=CISIN_1g030276mg PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 5.8e-94
Identity = 169/178 (94.94%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQV
Sbjct: 3   MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQV 62

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYNEMASRHRVR 
Sbjct: 63  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 122

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFR VRPPTRKL+TTYKASRPNLFM
Sbjct: 123 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180

[Close]

BLAST of Bhi03M000063 vs. NCBI nr
Match: XP_022146684.1 (60S ribosomal protein L18a-like [Momordica charantia])

HSP 1 Score: 365.2 bits (936), Expect = 1.3e-97
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. NCBI nr
Match: XP_004134633.1 (PREDICTED: 60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Csa_6G522810 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 2.9e-97
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. NCBI nr
Match: XP_022926366.1 (60S ribosomal protein L18a-like [Cucurbita moschata])

HSP 1 Score: 364.0 bits (933), Expect = 2.9e-97
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 24  MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 83

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 84  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 143

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 144 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 201

[Close]

BLAST of Bhi03M000063 vs. NCBI nr
Match: XP_023002909.1 (60S ribosomal protein L18a-like [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 2.9e-97
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Bhi03M000063 vs. NCBI nr
Match: XP_008439644.1 (PREDICTED: 60S ribosomal protein L18a [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 6.5e-97
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVRH
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

The following BLAST results are available for this feature:

BLAST of Bhi03M000063 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ATF5\|RL18A_CASSA	1.1e-92	92.13	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
sp\|P51418\|R18A2_ARATH	4.0e-90	89.89	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
sp\|Q9LUD4\|R18A3_ARATH	4.4e-89	90.29	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
sp\|Q943F3\|RL18A_ORYSJ	7.5e-89	88.76	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
sp\|Q8L7K0\|R18A1_ARATH	3.2e-87	87.08	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of Bhi03M000063 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34480.1	2.2e-91	89.89	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	2.5e-90	90.29	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	1.8e-88	87.08	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	1.9e-87	88.95	60S ribosomal protein L18A-1	[more]

BLAST of Bhi03M000063 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIJ4\|A0A0A0KIJ4_CUCSA	1.9e-97	98.88	60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1	[more]
tr\|A0A1S3AZ74\|A0A1S3AZ74_CUCME	4.3e-97	98.31	60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1	[more]
tr\|A0A2I4H351\|A0A2I4H351_9ROSI	1.5e-94	96.07	60S ribosomal protein L18a OS=Juglans regia OX=51240 GN=LOC109013089 PE=3 SV=1	[more]
tr\|A0A2H5PI13\|A0A2H5PI13_CITUN	5.8e-94	94.94	60S ribosomal protein L18a OS=Citrus unshiu OX=55188 GN=CUMW_138650 PE=3 SV=1	[more]
tr\|A0A067E9K7\|A0A067E9K7_CITSI	5.8e-94	94.94	60S ribosomal protein L18a OS=Citrus sinensis OX=2711 GN=CISIN_1g030276mg PE=3 S...	[more]

BLAST of Bhi03M000063 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146684.1	1.3e-97	99.44	60S ribosomal protein L18a-like [Momordica charantia]	[more]
XP_004134633.1	2.9e-97	98.88	PREDICTED: 60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical...	[more]
XP_022926366.1	2.9e-97	98.88	60S ribosomal protein L18a-like [Cucurbita moschata]	[more]
XP_023002909.1	2.9e-97	98.88	60S ribosomal protein L18a-like [Cucurbita maxima]	[more]
XP_008439644.1	6.5e-97	98.31	PREDICTED: 60S ribosomal protein L18a [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR028877	50S_L18Ae/Ribosomal_L18a/L20
IPR021138	Ribosomal_L18a/L20_eukaryotes
IPR023573	Ribosomal_L18a//L18Ae/LX

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi03G000063	Bhi03G000063	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi03M000063	Bhi03M000063-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M000063.utr3p1	Bhi03M000063.utr3p1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M000063.exon4	Bhi03M000063.exon4	exon
Bhi03M000063.exon3	Bhi03M000063.exon3	exon
Bhi03M000063.exon2	Bhi03M000063.exon2	exon
Bhi03M000063.exon1	Bhi03M000063.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi03M000063	cds.Bhi03M000063	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M000063.utr5p1	Bhi03M000063.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 e-value: 1.6E-54 score: 183.1
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 1..178 e-value: 8.1E-73 score: 241.3
None	No IPR available	GENE3D	G3DSA:3.10.20.10		coord: 72..147 e-value: 4.9E-41 score: 140.8
None	No IPR available	GENE3D	G3DSA:3.10.20.10		coord: 4..71 e-value: 6.3E-37 score: 127.2
None	No IPR available	PANTHER	PTHR10052:SF19	SUBFAMILY NOT NAMED	coord: 1..178
None	No IPR available	SUPERFAMILY	SSF160374	RplX-like	coord: 71..146
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..178
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 29..129 score: 42.843