Bhi02M001140 (mRNA) Wax gourd

Overview
NameBhi02M001140
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr2 : 34431365 .. 34435994 (+)
Sequence length570
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGTTTGATGAGTGAGGATAATGCATACAATAATGGAAGGCATCAGACAGAAGAAGTGATCAGTGGTGAGAGTTCATATTGGGCTCTCAATGGCTATCAATTTCCAACAACCAATTTGTCTTCTGATCATTTCCCTTTGGTTGTAGCTCCTACCACTCCCTCTGCTATCCATCTCTCCAATATTCCTCAGGTAATTACTCTCTTTCTTTTCTCTAACTATTCTTATGTTTCTTATTTCTTCAAAATTGACAATTCGTTCTTTGTCTAAAACCTTAGCAAAGATATTTCTAAGTAGTTTGGTTTCGTCCTGAACACTGTCACGAACAAAATGACAGTCCATCTCAATATATATAAATTGATTAATTGTCACAAAATAAACCTTCGAGTCTCCCAAATCTTTATTTGACATCTCTTTGTAAGTTAAGAAAGCTTTCACGTGCATCTTCCAATGCCCAAAACATTTTCTATCAATTTTTTTGTTGGTTCTGTCGAAACCTCTTAGCTTTATGATCCTATGACTCTTGAACCAAAACGTTTTTTGATACCGCTCGATTAGGACAAAAAAATCTCTACCTATTTTCTAACCAATATGAGATTTTATTTGCACCTAACAGATTTTTCTTATGTTTTAAATTAAAACGTAATAGATCTACATGAATACTTCATTCATAGATATGTAAGCTATGCAGGAAACTATGGGTGGTGGGAGTAGCCAATATCTACCCGGCTTCTTACAAATACATTCAACAGATCCATTTGGGTACGTTCCAATTTATTAATTTCCACTATTTCAATTTACTATAAACACTTCAATCGAGAGTATTTATTGATATAAATTATTTTAATGTTTTAGGAAATGTTTAGAGTTTTTTCAAAAAATCATTTTGATTTCAACACTTTCCATATAAAAATTTTTAAAATAAAACATTTATGTGTTTACCAACTCTTTCTCAAAATATTTTTATATACAATTTTGTTTGGTTAGTTTAATTATATACTTAAAGTGTTTCTATTAGTGTCAAAGTACTATAAAGAACGAGTATAATGAACTGATGGTTCAAAAAAAAAAAAAATCATGAACCAATAATTTAGGAAAATAGTTGTCGGAGTTGATCGTTTGGGGTGGTCAACATGAGAGTTGGTGGTGGTGGTGGCTGGAGTTAGTTCTCCAAGGTGGTTGTCAGAGTTAACCGCCGGTGGTAGTCGTTAGGATTGGTCGCCAGTGGAGGTCATTGGAGATGGTTGTTGGAAGTTTCATTGTAGTACGTTTTTTGTGGTGGTCACTAGAGGTGGACTGCGGAGGGTAGTGGTAGCCATGATAACATAGTGAATGTAAGGTGAAGGACTCTTAAAGGTAATTTGGTAATATTAAAAATTATACAACTTAGGAAGAGATTAACAATTCAACACTCGAAACTCTTTTTTCTAAAAGTGGATTTTCCATGTATCTCCTGAACTAACTTCTTTTATAATCTGATTTTTTTAAAAGCTATTTTGAGTGATTGTCGGGCACTCAAACCTTTTTCAAAATAAAATTGATAATCAACTAGGGAATAATATAGTTAAAGAAAATTGATGTATCCATTGTTTCAGGGCAGAAGAAATGCAATTTCATGGACTGTTGAACCAAGGACCATCAAATGGCACCTTTTACTCAACTGATCTTTCAACCATCCAATTTCCTCAGGTATTGCTTCTCTCAACATAATATACCATCTATCAAATTGTTTTTTCTTTTTTTTTTTGGCCATTTTCTTCTTCTTTTTCTTTTGAACATGGAATATTTTTTGTTCTTCAATTTTAAGTATAGAACTCGATTGGCTCATCAAGTTTCAAAATATTATAATTTTATTCATTAATTATGAATTTTGTCTCTATGTCATGTGTGTTATATATATTTCTACTTTGAGTTTTGAACTTAGTTTCAATCAAAATTTAATGGTAAATTGAAGTATAACATTTTGAAACATAGAGATGAAATGAAAACTAAAATTAGAACTCTTGAATATAAAAGGACAGTTGCAAATATAGCAATCAGATCTAAACTATTAGCAGGTATAACATAATATAAAAAAAATACAAATATGACAAAATTTAGATAATCTATCAATGATAGACTATATCGTTGGTAAGAGTTCATCAACCATAGAAGTCTATCACTAATAGACTTCGTTATATTCACATTTTTTTAAAAAAAATATTGTTTATACACTTAGTTGTTATCTCTAAAAATATTGTTCATTGCAATTACTTCTAACCTCTATAATAGACTTCTCACTCTTGAGCACTCTTTTTGAACCATCTTCTTCTTATTCTAATTTTTCATCAATATATATATATATATATATATATTTTTTGGAGTACATATGAAAATTTTCTCTTGTTTTACTCAAAGAGTGTTTTGAAGCATCCAATCAAATGTAGGACTTTGGTATTAAATTCAAACAGCCTACTTTCAACCTTGCCAATAAAACCCATCTATCAAAATGGGTTTAGGTTACTTCTCACATAAGAAAGAGATCCACAAAGCTTTCATGTCCTTACTCTTCCTTTTGCCCTTTTCTTTAACAATGTTGGGAAAAACCTCACTTTTACTGAAGAACAAGTAGAAAACAATTGAAAAATATTAAAAGAAAGCAACAAAACTAAGAATTAAGACACAAGAATTTACATAGCCATCTCCAAAATCGAAAATAGTCACGATCTATTAGAAAAAATTCATTGGGTGAAAAAATTGTTACAATAAACAAAATTCTCTACAATTATAGAAATTACAAGAGTATTGTCTCAAAACTAGAGTTAGCACACTCAAGCTTAAAGTATTTCTAATTGTGACACTATAAAAGTAGTTATTGGGTTTCTTATATTACTTGGAACTCATTACTTTCCAACTCTTTTAGATATAGGAACCCATTACTTTTCTATTCCTTTATATGTGAAATTTCTCTCTTCAAAATATTGTGCATAAACCCAATTAATTCCACATTGGTAAGCTACGAAGAATCCATGGCTTCTAGTAAATCCATTGTCTTCACCAACAATCATAATTCTCAAATCAAAGAACTATAATCTACATCATCGTAAAGAATAGACCAGTTAGAAGGTCGTCTTCCAAGATGTTTCTTTTTTGTCACATGACGATAAAACACTATTGAAATTTATGCTACAGTTTTTACCTGCTTTGCTCACTTGAAAATTCTTCAACCATAGACATAACTTCCACCACACACACACCTTGTATGACTGTGAAGTCAGGGCCCATGTGTAAACGTGTGGAATTGCTAGCATCCCATCTTGTATCATGATAAAGCAAACATATCACGAGGATGAATTTTACCTTTCTTTAGAGGAAATCATTCTTTTTCTCCAATGAGAGAGAGAGTGTTAGTATCCAACCTACGACCCTCCTCGTTTTCTTATGAAGAAGTCATAGTTGTTTCTTCTAAAGATGAATTCTATCACGATTGTTGTTACAGACATCAAGACATGCAAGGGATAACGTCTCGATGTTGTACCTTAGTCGTGTGCTATTTTATGAAAGAAAATTTGATAGTGTCGAGATGCCATAAATAATATTTCGACGTAATGGACAAAAAGTAGTATTGAGATGACACATCTGTGACGTCGAGTGAAGTATAACTTATCCAAGTACGATTGTAGCATTGCTATGTTACATACCAAGACATTGTATGTGCAAAAAATTTGATTTGTGCATATGTGTGACAAACTTAGCACTGTTAGCGCCTTTGTACTCCAATTGTTTGAAATGTAAAAATAAAACATATATCCTCATGAAATTCACTGTTCTAACCTCAAAACTAGCCTGAAATAAGTCCTAGATCAGATAGTGCATATGTATCTTAAACTTACAAAAAGAGAGTAAATTAAAATGATAGATTCATATTTTATTTGGTATATTATATATCTATCTCTGATTACAGACAAGATTGAATCTGGAAGATGGGCTGCCATCATCTTCCAATCTTCACCTCTCACGCCATTGGATTTCTGAAGGCAATGTCTTAAGCAATGCTACCACACCTCCAACTTCAAGGTACATCCAAACTTAATTTTTTTGCTTAAGCTTTTATGTTACTTTTATTTTAATGTATTTTAAGTCTCTAACCTTCTAAATATTTCTATTTTACATCAAATTACAAGTTCAACGACTTCTTAATATTTATCTAATGGGTAGTTGCAAATATAACGAGCAGGCCCAAATATTAGCATATACAGCACAAAATGCAAAAAATATACATATATAGAAATAGCAAAATTTGGATTTAACTTTAGAATCTATTAGTGATAGACCATATTAAATGGTAGGAGTATAGAATCTAGTGTTCATATACATTAAGAATCCAACTAACCCATTAGATATTGATGTTTAAAGACGTGTTAAACGTGAAGATTAAAGCTTTAATAGGGTATGAAATGCAATATTGAAATCTAAAAGGACTAGAATTGTAACATAAGAATTGTGATAGTATTGTAATAATTTGATAAAATATATGAAATTTGGAAACAGGTCAGCAGAAAGTAGAAATGCAGTTTATGACCCAACGTATGAGTCGATGGGATTACCTATAGAATCCTCATTTACGCCTCTTTCTTTCATGGCGTGA

mRNA sequence

ATGGGGAGTTTGATGAGTGAGGATAATGCATACAATAATGGAAGGCATCAGACAGAAGAAGTGATCAGTGGTGAGAGTTCATATTGGGCTCTCAATGGCTATCAATTTCCAACAACCAATTTGTCTTCTGATCATTTCCCTTTGGTTGTAGCTCCTACCACTCCCTCTGCTATCCATCTCTCCAATATTCCTCAGGAAACTATGGGTGGTGGGAGTAGCCAATATCTACCCGGCTTCTTACAAATACATTCAACAGATCCATTTGGGGCAGAAGAAATGCAATTTCATGGACTGTTGAACCAAGGACCATCAAATGGCACCTTTTACTCAACTGATCTTTCAACCATCCAATTTCCTCAGACAAGATTGAATCTGGAAGATGGGCTGCCATCATCTTCCAATCTTCACCTCTCACGCCATTGGATTTCTGAAGGCAATGTCTTAAGCAATGCTACCACACCTCCAACTTCAAGGTCAGCAGAAAGTAGAAATGCAGTTTATGACCCAACGTATGAGTCGATGGGATTACCTATAGAATCCTCATTTACGCCTCTTTCTTTCATGGCGTGA

Coding sequence (CDS)

ATGGGGAGTTTGATGAGTGAGGATAATGCATACAATAATGGAAGGCATCAGACAGAAGAAGTGATCAGTGGTGAGAGTTCATATTGGGCTCTCAATGGCTATCAATTTCCAACAACCAATTTGTCTTCTGATCATTTCCCTTTGGTTGTAGCTCCTACCACTCCCTCTGCTATCCATCTCTCCAATATTCCTCAGGAAACTATGGGTGGTGGGAGTAGCCAATATCTACCCGGCTTCTTACAAATACATTCAACAGATCCATTTGGGGCAGAAGAAATGCAATTTCATGGACTGTTGAACCAAGGACCATCAAATGGCACCTTTTACTCAACTGATCTTTCAACCATCCAATTTCCTCAGACAAGATTGAATCTGGAAGATGGGCTGCCATCATCTTCCAATCTTCACCTCTCACGCCATTGGATTTCTGAAGGCAATGTCTTAAGCAATGCTACCACACCTCCAACTTCAAGGTCAGCAGAAAGTAGAAATGCAGTTTATGACCCAACGTATGAGTCGATGGGATTACCTATAGAATCCTCATTTACGCCTCTTTCTTTCATGGCGTGA

Protein sequence

MGSLMSEDNAYNNGRHQTEEVISGESSYWALNGYQFPTTNLSSDHFPLVVAPTTPSAIHLSNIPQETMGGGSSQYLPGFLQIHSTDPFGAEEMQFHGLLNQGPSNGTFYSTDLSTIQFPQTRLNLEDGLPSSSNLHLSRHWISEGNVLSNATTPPTSRSAESRNAVYDPTYESMGLPIESSFTPLSFMA
Homology
[Close]
BLAST of Bhi02M001140 vs. TrEMBL
Match: tr|A0A1S3B8P4|A0A1S3B8P4_CUCME (uncharacterized protein LOC103487245 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487245 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 120/199 (60.30%), Postives = 132/199 (66.33%), Query Frame = 0 

Query: 1   MGSLMSEDNAYNNGRHQTEEVISGESSYWALNGYQFP--TTNLSSDHFPLVVAPTTPSAI 60
           +G+LMSEDNA N                   N YQF   T  L SD+FPL V PTTP+ +
Sbjct: 30  IGNLMSEDNASN------------------ANCYQFAVVTNQLGSDYFPLAVPPTTPTFV 89

Query: 61  HLSNIPQETMGGGSSQYLPGFLQIHSTD-----------------PFGAEEMQFHGLLNQ 120
           H+SN  QETMGG +SQY PGF Q HS D                 PFG EE+QF GLLNQ
Sbjct: 90  HMSN-AQETMGGENSQYPPGFFQTHSKDQWYPLKKQNNIQHPSSTPFGTEEIQF-GLLNQ 149

Query: 121 GPSNGTFYSTDLSTIQFPQTRLNLEDGLPSSSNLHLSRHWISEGNVLSNATTPPTSR-SA 180
           G SNG FY + LS  QFPQ RLNL+D LPSSSNLHL R+WISE NVLSNATTPPTSR SA
Sbjct: 150 GSSNGAFYPSGLSNTQFPQPRLNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSA 208

[Close]
BLAST of Bhi02M001140 vs. TrEMBL
Match: tr|A0A1S3B887|A0A1S3B887_CUCME (uncharacterized protein LOC103487245 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487245 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 120/199 (60.30%), Postives = 132/199 (66.33%), Query Frame = 0 

Query: 1   MGSLMSEDNAYNNGRHQTEEVISGESSYWALNGYQFP--TTNLSSDHFPLVVAPTTPSAI 60
           +G+LMSEDNA N                   N YQF   T  L SD+FPL V PTTP+ +
Sbjct: 30  IGNLMSEDNASN------------------ANCYQFAVVTNQLGSDYFPLAVPPTTPTFV 89

Query: 61  HLSNIPQETMGGGSSQYLPGFLQIHSTD-----------------PFGAEEMQFHGLLNQ 120
           H+SN  QETMGG +SQY PGF Q HS D                 PFG EE+QF GLLNQ
Sbjct: 90  HMSN-AQETMGGENSQYPPGFFQTHSKDQWYPLKKQNNIQHPSSTPFGTEEIQF-GLLNQ 149

Query: 121 GPSNGTFYSTDLSTIQFPQTRLNLEDGLPSSSNLHLSRHWISEGNVLSNATTPPTSR-SA 180
           G SNG FY + LS  QFPQ RLNL+D LPSSSNLHL R+WISE NVLSNATTPPTSR SA
Sbjct: 150 GSSNGAFYPSGLSNTQFPQPRLNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSA 208

[Close]
BLAST of Bhi02M001140 vs. NCBI nr
Match: XP_008443727.1 (PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 3.1e-49
Identity = 120/199 (60.30%), Postives = 132/199 (66.33%), Query Frame = 0 

Query: 1   MGSLMSEDNAYNNGRHQTEEVISGESSYWALNGYQFP--TTNLSSDHFPLVVAPTTPSAI 60
           +G+LMSEDNA N                   N YQF   T  L SD+FPL V PTTP+ +
Sbjct: 30  IGNLMSEDNASN------------------ANCYQFAVVTNQLGSDYFPLAVPPTTPTFV 89

Query: 61  HLSNIPQETMGGGSSQYLPGFLQIHSTD-----------------PFGAEEMQFHGLLNQ 120
           H+SN  QETMGG +SQY PGF Q HS D                 PFG EE+QF GLLNQ
Sbjct: 90  HMSN-AQETMGGENSQYPPGFFQTHSKDQWYPLKKQNNIQHPSSTPFGTEEIQF-GLLNQ 149

Query: 121 GPSNGTFYSTDLSTIQFPQTRLNLEDGLPSSSNLHLSRHWISEGNVLSNATTPPTSR-SA 180
           G SNG FY + LS  QFPQ RLNL+D LPSSSNLHL R+WISE NVLSNATTPPTSR SA
Sbjct: 150 GSSNGAFYPSGLSNTQFPQPRLNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSA 208

[Close]
BLAST of Bhi02M001140 vs. NCBI nr
Match: XP_008443728.1 (PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 3.1e-49
Identity = 120/199 (60.30%), Postives = 132/199 (66.33%), Query Frame = 0 

Query: 1   MGSLMSEDNAYNNGRHQTEEVISGESSYWALNGYQFP--TTNLSSDHFPLVVAPTTPSAI 60
           +G+LMSEDNA N                   N YQF   T  L SD+FPL V PTTP+ +
Sbjct: 30  IGNLMSEDNASN------------------ANCYQFAVVTNQLGSDYFPLAVPPTTPTFV 89

Query: 61  HLSNIPQETMGGGSSQYLPGFLQIHSTD-----------------PFGAEEMQFHGLLNQ 120
           H+SN  QETMGG +SQY PGF Q HS D                 PFG EE+QF GLLNQ
Sbjct: 90  HMSN-AQETMGGENSQYPPGFFQTHSKDQWYPLKKQNNIQHPSSTPFGTEEIQF-GLLNQ 149

Query: 121 GPSNGTFYSTDLSTIQFPQTRLNLEDGLPSSSNLHLSRHWISEGNVLSNATTPPTSR-SA 180
           G SNG FY + LS  QFPQ RLNL+D LPSSSNLHL R+WISE NVLSNATTPPTSR SA
Sbjct: 150 GSSNGAFYPSGLSNTQFPQPRLNLQDELPSSSNLHLPRNWISEDNVLSNATTPPTSRSSA 208

The following BLAST results are available for this feature:
BLAST of Bhi02M001140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi02M001140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi02M001140 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B8P4|A0A1S3B8P4_CUCME2.1e-4960.30uncharacterized protein LOC103487245 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3B887|A0A1S3B887_CUCME2.1e-4960.30uncharacterized protein LOC103487245 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Bhi02M001140 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443727.13.1e-4960.30PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo][more]
XP_008443728.13.1e-4960.30PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi02G001140Bhi02G001140gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi02M001140Bhi02M001140-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi02M001140.exon1Bhi02M001140.exon1exon
Bhi02M001140.exon2Bhi02M001140.exon2exon
Bhi02M001140.exon3Bhi02M001140.exon3exon
Bhi02M001140.exon4Bhi02M001140.exon4exon
Bhi02M001140.exon5Bhi02M001140.exon5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi02M001140cds.Bhi02M001140CDS