Bhi02M001049 (mRNA) Wax gourd

Overview
NameBhi02M001049
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr2 : 29989553 .. 29991826 (-)
Sequence length1485
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTACAAGAGAATGCTTTTCTGACGGTTCTACCATTGCACATGAAGTTGTGTGTCGTCTTCTTCCGCTTTTGCTGTTTACAGGTTTCTTCTAATTCAGCATCTACATGTAATTTCCTTCCATTCTTTTTCTCTAGAAGATGGTTGAGTCAAAGTCAAAGAGTCCCATCTTCATTTTTGCTTCAAACCAGACCATTTCCTGATTATTCTCCCAAGAAGCCTACAATTAGAGATACTGACCTTATCCATGACATCACTGCTGCAATTAAGTTGCGTCGTTATGAGCCCCTTCGTTGCATTCTAAAGCCTCATGAACCTAACTTTAGGCATGATCATCTGATTTGGGTACTAATGAACATTAAGAATGACTATAATCTGGTTTTGGCTTTCTTTGATTGGGCACGGGTTCGTAGAGATCCATCACTAGAAGCCCGTTGCATTGTTATTCACATTGCCGTGGTGTCGAACGATCTTAGAATGGCTCATGAACTGGTTCATGATTATTTTTTGAACTCAAAACTGGAGGTTGGTGTTACAGTGATTCAATTTACCAACCGGCTGATATACACATATAAATACTGGGGATCAAACCCCATTGCATTTGATATATTTTTTCAAGTCCTAGTTGAAATTGGTTATTTAAGTGAAGCAAGAAAACTATTGGACAAATTATTGAGCTACGGATTAGTTGTCACTGTTGATTCTTGTAATGCTTTTCTTAGTCGCATTGCTAACAATTCTGAAGGAATAGAAATGGCAATAAAGGTTTTTTGTGAATATGGTATTAGTTGGAATACTACATCTTATAATATCATTATTTATTCTTTATGTCAATTGGGAAAAGTAAAAGAAGCCCATCGGTTACTCATGCAGATGGATTTTAGGAGTTCTACACCTGATGTTATTAGTTATAGTACTCTGATTGATGGATATTGTCATTTGGGAGAATTGAAGAAGGCATTGAAGCTTATAGATGACATGCAAATAAAAGGACTGAAACCAAACCGTTACACCTACAATAGCATAATATTACTTTTGTGTAAAATTGGTAAGCCATTTGAAGCAGAAAAAGTATTGAGAGAGATGATGTCCCAAAAAATTATTCCTGATAATGTTGTCTACACCACTCTCATACATGGTTTCTTCAAATTAGGACATATTCAAACTGCAAAGAAATGGTTTGACGAAATTCTGTTTAAGAAGATCAGTCCTGATTGTGTAACCTATACAACTCTTATCCAGGGATTTGGTCAAAGTGGAAAGGTAATAGAGCCACAAAATCTTTTCCATGAAATGATTAGCAGAGGCTTAAAGCCTGATGAAGTTACATATACAACGCTAATCGATGTTTACTGCAAAGCAGGTGAGATGATGAAGGCATTTTCTCTTCACAATGAGATGGTTCAAATGGGAATGACTCCAAATGTTGTTACTTACGGTGCCCTGATTGATGGCCTTTGTAAGCATGGAGAACTAAATACAGCAAATGAGCTTTTGGATGAGATGCGCAAAAAGGGCCTTCAACTGAATGTGTGCACTTATAACTCAATGATTAATGGTATTTGCAAAGCTGGAGATATTGCACAAGCAATTAGATTAATGAAAGAGATGGAGGTGGCTGGGATTGATCCTGATACTATCACTTATACCACGGTCATTGATGCTTATTGTAGATTAGGAGATATTGGTAAGGCTCATAGACTTCTTCAGGAGATGTTAGATAGAGGTCTTCAACCAACAGTTGTCACATTTAATGTTCTAATGAATGGATTTTGTATGTTGGGAATGCTCGAAGATGGTGATATGCTCTTGGGATGGATGCTAGAGAAGGGTATTGTGCCTAATGCAATAACGTACAATACTCTCATGAAGCAGTATTGCATTAGAAATAATATGAAAACTACAACTGAGATTTACAAGAGGATGCGTAGTCAAGGAGTTATGCCGGATAGTAACACCTACAATACTTTAATAAAAGGGCATTGTAAGGCACGAAATCTGAAAGAGGCATGGTTTTTACATAAAGAAATGGTTGAAAAAGGATATGTTCCCACTGTTACTTCATATAATGCACTTATAAAGGGGTTTTATAAGAAAAGGAAAATTTTGGAAGCAAGGGAACTCTTTGAAGAGATGAGAGGACATGGGTTGGTTGCTGATGGAGAAATATACAATATCTTTGTTGATATGTACTACGAAGAAGGAAATATGGAGATAACTCTTAATCTCTGTGATGAAGCAATTGAGAAATGTCTTCTTAATGAGAGATGA

mRNA sequence

ATGTGTTTACAAGAGAATGCTTTTCTGACGGTTCTACCATTGCACATGAAGTTGTGTGTCGTCTTCTTCCGCTTTTGCTGTTTACAGATGGATTTTAGGAGTTCTACACCTGATGTTATTAGTTATAGTACTCTGATTGATGGATATTGTCATTTGGGAGAATTGAAGAAGGCATTGAAGCTTATAGATGACATGCAAATAAAAGGACTGAAACCAAACCGTTACACCTACAATAGCATAATATTACTTTTGTGTAAAATTGGTAAGCCATTTGAAGCAGAAAAAGTATTGAGAGAGATGATGTCCCAAAAAATTATTCCTGATAATGTTGTCTACACCACTCTCATACATGGTTTCTTCAAATTAGGACATATTCAAACTGCAAAGAAATGGTTTGACGAAATTCTGTTTAAGAAGATCAGTCCTGATTGTGTAACCTATACAACTCTTATCCAGGGATTTGGTCAAAGTGGAAAGGTAATAGAGCCACAAAATCTTTTCCATGAAATGATTAGCAGAGGCTTAAAGCCTGATGAAGTTACATATACAACGCTAATCGATGTTTACTGCAAAGCAGGTGAGATGATGAAGGCATTTTCTCTTCACAATGAGATGGTTCAAATGGGAATGACTCCAAATGTTGTTACTTACGGTGCCCTGATTGATGGCCTTTGTAAGCATGGAGAACTAAATACAGCAAATGAGCTTTTGGATGAGATGCGCAAAAAGGGCCTTCAACTGAATGTGTGCACTTATAACTCAATGATTAATGGTATTTGCAAAGCTGGAGATATTGCACAAGCAATTAGATTAATGAAAGAGATGGAGGTGGCTGGGATTGATCCTGATACTATCACTTATACCACGGTCATTGATGCTTATTGTAGATTAGGAGATATTGGTAAGGCTCATAGACTTCTTCAGGAGATGTTAGATAGAGGTCTTCAACCAACAGTTGTCACATTTAATGTTCTAATGAATGGATTTTGTATGTTGGGAATGCTCGAAGATGGTGATATGCTCTTGGGATGGATGCTAGAGAAGGGTATTGTGCCTAATGCAATAACGTACAATACTCTCATGAAGCAGTATTGCATTAGAAATAATATGAAAACTACAACTGAGATTTACAAGAGGATGCGTAGTCAAGGAGTTATGCCGGATAGTAACACCTACAATACTTTAATAAAAGGGCATTGTAAGGCACGAAATCTGAAAGAGGCATGGTTTTTACATAAAGAAATGGTTGAAAAAGGATATGTTCCCACTGTTACTTCATATAATGCACTTATAAAGGGGTTTTATAAGAAAAGGAAAATTTTGGAAGCAAGGGAACTCTTTGAAGAGATGAGAGGACATGGGTTGGTTGCTGATGGAGAAATATACAATATCTTTGTTGATATGTACTACGAAGAAGGAAATATGGAGATAACTCTTAATCTCTGTGATGAAGCAATTGAGAAATGTCTTCTTAATGAGAGATGA

Coding sequence (CDS)

ATGTGTTTACAAGAGAATGCTTTTCTGACGGTTCTACCATTGCACATGAAGTTGTGTGTCGTCTTCTTCCGCTTTTGCTGTTTACAGATGGATTTTAGGAGTTCTACACCTGATGTTATTAGTTATAGTACTCTGATTGATGGATATTGTCATTTGGGAGAATTGAAGAAGGCATTGAAGCTTATAGATGACATGCAAATAAAAGGACTGAAACCAAACCGTTACACCTACAATAGCATAATATTACTTTTGTGTAAAATTGGTAAGCCATTTGAAGCAGAAAAAGTATTGAGAGAGATGATGTCCCAAAAAATTATTCCTGATAATGTTGTCTACACCACTCTCATACATGGTTTCTTCAAATTAGGACATATTCAAACTGCAAAGAAATGGTTTGACGAAATTCTGTTTAAGAAGATCAGTCCTGATTGTGTAACCTATACAACTCTTATCCAGGGATTTGGTCAAAGTGGAAAGGTAATAGAGCCACAAAATCTTTTCCATGAAATGATTAGCAGAGGCTTAAAGCCTGATGAAGTTACATATACAACGCTAATCGATGTTTACTGCAAAGCAGGTGAGATGATGAAGGCATTTTCTCTTCACAATGAGATGGTTCAAATGGGAATGACTCCAAATGTTGTTACTTACGGTGCCCTGATTGATGGCCTTTGTAAGCATGGAGAACTAAATACAGCAAATGAGCTTTTGGATGAGATGCGCAAAAAGGGCCTTCAACTGAATGTGTGCACTTATAACTCAATGATTAATGGTATTTGCAAAGCTGGAGATATTGCACAAGCAATTAGATTAATGAAAGAGATGGAGGTGGCTGGGATTGATCCTGATACTATCACTTATACCACGGTCATTGATGCTTATTGTAGATTAGGAGATATTGGTAAGGCTCATAGACTTCTTCAGGAGATGTTAGATAGAGGTCTTCAACCAACAGTTGTCACATTTAATGTTCTAATGAATGGATTTTGTATGTTGGGAATGCTCGAAGATGGTGATATGCTCTTGGGATGGATGCTAGAGAAGGGTATTGTGCCTAATGCAATAACGTACAATACTCTCATGAAGCAGTATTGCATTAGAAATAATATGAAAACTACAACTGAGATTTACAAGAGGATGCGTAGTCAAGGAGTTATGCCGGATAGTAACACCTACAATACTTTAATAAAAGGGCATTGTAAGGCACGAAATCTGAAAGAGGCATGGTTTTTACATAAAGAAATGGTTGAAAAAGGATATGTTCCCACTGTTACTTCATATAATGCACTTATAAAGGGGTTTTATAAGAAAAGGAAAATTTTGGAAGCAAGGGAACTCTTTGAAGAGATGAGAGGACATGGGTTGGTTGCTGATGGAGAAATATACAATATCTTTGTTGATATGTACTACGAAGAAGGAAATATGGAGATAACTCTTAATCTCTGTGATGAAGCAATTGAGAAATGTCTTCTTAATGAGAGATGA

Protein sequence

MCLQENAFLTVLPLHMKLCVVFFRFCCLQMDFRSSTPDVISYSTLIDGYCHLGELKKALKLIDDMQIKGLKPNRYTYNSIILLLCKIGKPFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHIQTAKKWFDEILFKKISPDCVTYTTLIQGFGQSGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMMKAFSLHNEMVQMGMTPNVVTYGALIDGLCKHGELNTANELLDEMRKKGLQLNVCTYNSMINGICKAGDIAQAIRLMKEMEVAGIDPDTITYTTVIDAYCRLGDIGKAHRLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDMLLGWMLEKGIVPNAITYNTLMKQYCIRNNMKTTTEIYKRMRSQGVMPDSNTYNTLIKGHCKARNLKEAWFLHKEMVEKGYVPTVTSYNALIKGFYKKRKILEARELFEEMRGHGLVADGEIYNIFVDMYYEEGNMEITLNLCDEAIEKCLLNER
Homology
The following BLAST results are available for this feature:
BLAST of Bhi02M001049 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi02M001049 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi02M001049 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi02M001049 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi02G001049Bhi02G001049gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi02M001049.exon2Bhi02M001049.exon2exon
Bhi02M001049.exon1Bhi02M001049.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi02M001049cds.Bhi02M001049CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi02M001049Bhi02M001049-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 25..135
e-value: 8.1E-30
score: 106.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 344..492
e-value: 8.2E-40
score: 139.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 276..343
e-value: 9.7E-21
score: 76.1
coord: 208..275
e-value: 2.4E-24
score: 87.8
coord: 136..207
e-value: 2.1E-22
score: 81.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 107..154
e-value: 1.2E-13
score: 50.9
coord: 37..86
e-value: 5.4E-17
score: 61.6
coord: 248..296
e-value: 7.7E-18
score: 64.3
coord: 422..467
e-value: 2.0E-8
score: 34.2
coord: 352..401
e-value: 5.4E-14
score: 52.0
coord: 177..226
e-value: 1.8E-18
score: 66.4
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 313..337
e-value: 7.2E-7
score: 28.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 110..144
e-value: 3.5E-7
score: 28.0
coord: 145..179
e-value: 3.1E-5
score: 21.8
coord: 75..108
e-value: 6.0E-8
score: 30.4
coord: 391..424
e-value: 2.2E-10
score: 38.1
coord: 320..354
e-value: 5.5E-7
score: 27.4
coord: 285..318
e-value: 7.4E-11
score: 39.5
coord: 426..458
e-value: 6.0E-7
score: 27.2
coord: 250..284
e-value: 2.2E-9
score: 34.9
coord: 215..248
e-value: 6.9E-9
score: 33.3
coord: 355..388
e-value: 1.7E-6
score: 25.8
coord: 180..214
e-value: 2.7E-10
score: 37.8
coord: 40..73
e-value: 1.4E-9
score: 35.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 213..247
score: 12.956
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 11.849
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 11.29
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 11.553
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 283..317
score: 14.031
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 423..457
score: 11.488
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..177
score: 12.299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 10.348
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 458..488
score: 6.544
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 13.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 38..72
score: 13.296
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 13.132
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 178..212
score: 13.428
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 27..475
NoneNo IPR availablePANTHERPTHR24015:SF949SUBFAMILY NOT NAMEDcoord: 27..475
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 189..315
coord: 352..451