Bhi01M002735 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M002735
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	DUF21 domain-containing protein
Location	chr1 : 89261483 .. 89261680 (-)
Sequence length	198

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTATGATTGGGAATGTTCTTGAGATAAAAGATACACATGTGAGAGAGGTGATGACACCTTTAATTGATGTGGTTGCAATTGATGGCAGTGCCACACTGGTGGACTTCCACAATTTGTGGGTGACTCATGAGTACTCATGGTACGTTAAACTTTTAGGCCAAGTGTCTGATGGCCTTTCCCCACAAATTGTTGTTTGA

mRNA sequence

GGTATGATTGGGAATGTTCTTGAGATAAAAGATACACATGTGAGAGAGGTGATGACACCTTTAATTGATGTGGTTGCAATTGATGGCAGTGCCACACTGGTGGACTTCCACAATTTGTGGGTGACTCATGAGTACTCATGGTACGTTAAACTTTTAGGCCAAGTGTCTGATGGCCTTTCCCCACAAATTGTTGTTTGA

Coding sequence (CDS)

GGTATGATTGGGAATGTTCTTGAGATAAAAGATACACATGTGAGAGAGGTGATGACACCTTTAATTGATGTGGTTGCAATTGATGGCAGTGCCACACTGGTGGACTTCCACAATTTGTGGGTGACTCATGAGTACTCATGGTACGTTAAACTTTTAGGCCAAGTGTCTGATGGCCTTTCCCCACAAATTGTTGTTTGA

Protein sequence

GMIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYSWYVKLLGQVSDGLSPQIVV

Homology

[Close]

BLAST of Bhi01M002735 vs. TAIR10
Match: AT1G55930.1 (CBS domain-containing protein / transporter associated domain-containing protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-17
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPL+DVVAIDGS +LVDFHN WVTH+YS
Sbjct: 338 MIENVLEIKDTHVREVMTPLVDVVAIDGSGSLVDFHNFWVTHQYS 382

[Close]

BLAST of Bhi01M002735 vs. TAIR10
Match: AT3G13070.1 (CBS domain-containing protein / transporter associated domain-containing protein)

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-17
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPL+DVVAID SA+LVDFH++WVTH+YS
Sbjct: 343 MIENVLEIKDTHVREVMTPLVDVVAIDASASLVDFHSMWVTHQYS 387

[Close]

BLAST of Bhi01M002735 vs. Swiss-Prot
Match: sp|Q84R21|Y1559_ARATH (DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSDUFCH2 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-16
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPL+DVVAIDGS +LVDFHN WVTH+YS
Sbjct: 338 MIENVLEIKDTHVREVMTPLVDVVAIDGSGSLVDFHNFWVTHQYS 382

[Close]

BLAST of Bhi01M002735 vs. Swiss-Prot
Match: sp|Q9LK65|Y3307_ARATH (Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSDUFCH1 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-16
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPL+DVVAID SA+LVDFH++WVTH+YS
Sbjct: 343 MIENVLEIKDTHVREVMTPLVDVVAIDASASLVDFHSMWVTHQYS 387

[Close]

BLAST of Bhi01M002735 vs. TrEMBL
Match: tr|A0A1S3CI33|A0A1S3CI33_CUCME (DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501228 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 342 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 386

[Close]

BLAST of Bhi01M002735 vs. TrEMBL
Match: tr|A0A1S3CIL7|A0A1S3CIL7_CUCME (putative DUF21 domain-containing protein At3g13070, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501228 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 150 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 194

[Close]

BLAST of Bhi01M002735 vs. TrEMBL
Match: tr|A0A0A0LAU1|A0A0A0LAU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769650 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 342 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 386

[Close]

BLAST of Bhi01M002735 vs. TrEMBL
Match: tr|A0A1U8B2I7|A0A1U8B2I7_NELNU (putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104606596 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-15
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPL+D+VAIDGSATL+DFHNLWVTH+YS
Sbjct: 343 MIENVLEIKDTHVREVMTPLVDIVAIDGSATLIDFHNLWVTHQYS 387

[Close]

BLAST of Bhi01M002735 vs. TrEMBL
Match: tr|A0A2P5F8G4|A0A2P5F8G4_9ROSA (Gliding motility-associated protein GldE OS=Trema orientalis OX=63057 GN=TorRG33x02_101340 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPL+DVVAIDGSATLVDFHNLW+TH+YS
Sbjct: 342 MIENVLEIKDTHVREVMTPLVDVVAIDGSATLVDFHNLWLTHQYS 386

[Close]

BLAST of Bhi01M002735 vs. NCBI nr
Match: XP_004150468.1 (PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 [Cucumis sativus] >XP_011651998.1 PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 342 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 386

[Close]

BLAST of Bhi01M002735 vs. NCBI nr
Match: XP_008462967.1 (PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 [Cucumis melo] >XP_008462969.1 PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 342 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 386

[Close]

BLAST of Bhi01M002735 vs. NCBI nr
Match: XP_008462970.1 (PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 150 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 194

[Close]

BLAST of Bhi01M002735 vs. NCBI nr
Match: KGN59100.1 (hypothetical protein Csa_3G769650 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 342 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 386

[Close]

BLAST of Bhi01M002735 vs. NCBI nr
Match: XP_011651999.1 (PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   MIGNVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHEYS 47
           MI NVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTH+YS
Sbjct: 150 MIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYS 194

The following BLAST results are available for this feature:

BLAST of Bhi01M002735 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55930.1	1.3e-17	86.67	CBS domain-containing protein / transporter associated domain-containing protein	[more]
AT3G13070.1	5.0e-17	84.44	CBS domain-containing protein / transporter associated domain-containing protein	[more]

BLAST of Bhi01M002735 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84R21\|Y1559_ARATH	2.4e-16	86.67	DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|Q9LK65\|Y3307_ARATH	9.0e-16	84.44	Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis...	[more]

BLAST of Bhi01M002735 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI33\|A0A1S3CI33_CUCME	1.5e-15	95.56	DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 OS=Cucumis m...	[more]
tr\|A0A1S3CIL7\|A0A1S3CIL7_CUCME	1.5e-15	95.56	putative DUF21 domain-containing protein At3g13070, chloroplastic isoform X2 OS=...	[more]
tr\|A0A0A0LAU1\|A0A0A0LAU1_CUCSA	1.5e-15	95.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769650 PE=4 SV=1	[more]
tr\|A0A1U8B2I7\|A0A1U8B2I7_NELNU	3.3e-15	88.89	putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Nelumbo nuc...	[more]
tr\|A0A2P5F8G4\|A0A2P5F8G4_9ROSA	4.4e-15	91.11	Gliding motility-associated protein GldE OS=Trema orientalis OX=63057 GN=TorRG33...	[more]

BLAST of Bhi01M002735 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150468.1	2.3e-15	95.56	PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 [...	[more]
XP_008462967.1	2.3e-15	95.56	PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform X1 [...	[more]
XP_008462970.1	2.3e-15	95.56	PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic iso...	[more]
KGN59100.1	2.3e-15	95.56	hypothetical protein Csa_3G769650 [Cucumis sativus]	[more]
XP_011651999.1	2.3e-15	95.56	PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic iso...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050660	flavin adenine dinucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G002735	Bhi01G002735	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M002735	cds.Bhi01M002735	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M002735.exon1	Bhi01M002735.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M002735	Bhi01M002735-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.580.10		coord: 1..57 e-value: 3.9E-8 score: 35.3
None	No IPR available	PANTHER	PTHR22777	HEMOLYSIN-RELATED	coord: 2..48
None	No IPR available	PANTHER	PTHR22777:SF3	UPF0053 PROTEIN YEGH	coord: 2..48
None	No IPR available	SUPERFAMILY	SSF54631	CBS-domain pair	coord: 2..48