Bhi01M001031 (mRNA) Wax gourd

Overview
NameBhi01M001031
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr1 : 28752595 .. 28756314 (+)
Sequence length1320
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGCCTTTTTCAACTCTTTCTTTAGCTTCCAAATATGCAAGTTCATACCACAACGAAGAAGACGACTGGTTCCCAAATCTATACAGAGTCTTCAATGCCGCTTCCACTTCCTTATCATTAAGCTTCAGTACTTTTCCGATCTCCCTTATAACCGCACCCCCCGACACCGGCAAGCAAAAATGTTGAATCACTGTTTTGAAATTCGGTATGTAAATTTCTTGCGATTTGTCCAAAAAACGCTTTCTTAGCCTCGATACCCCATGCCGTAGTTTCTCCGTAAGCGGCAACATTGAAGCACCCAGAATCGTTATGTTTGATCGGAGAGTTTCTCCGGCGACTTGGAGTAAATCCCTTGTCAGAGTGACGCCGAGTTTTCCGTCCATGTCCTCTTCGCGTAAGGCTGATAGGTAACTTTTATCGTCAAAAGCTCTTTGTGTTCTAAGTGTTTTAAATAGTTTATATTTTGAAGATTCTTTTGCTTCTTTTTTGTTGGAGAGTAGAATAGCTGCACTGCCCATCCGAAAGAGGCAGTTAAGGATCAATTTAGAGCGTTCCTTTCCTGCATACCAACCGTTAGACAAAATTTCTGTACTAAGCACGACTGCATATGAGTTTTTATGAACTTGAAGTAGATTTTCAGCTAAATGAATAGCAATAGCGCTTGCACTACACCCCATTCCAGAGAGATTGTAGCTCTTGATGTCACTTTTCATTGAATATTTGTTGATGACTATGGAAGACAGAGAAGGAGAAGGGCAAAAGCCACTGCAATTAACGATAAGAATATCAATGTCGGAAGGAGAGAGATGGGTTTTGGTTAAAAGGTCATCCATGACAGGAAACAGCACCATATGGACTTCATTAATGGATTCTTGTAGATGGGTTTTGGGTGGTATGAAATGCAGGGCTGGTGGGAGACAAGTTTCTTCACTCTGTCCAGAAGACTTGAGAGTTTTGGCCATGAAACTGATGCTCTCACTGTCAAAAGTATCCATCAAAGTGGCATTTTCAAGGAAAGTAGAGAATGGAACCCTGAAGAAGCTTGGTGGTTTGAGGCATGAGAAGTCAACTAAGTAGACTGATTTAGGAGAGGCAATATTGAAGATGATGAAGACGACAAGGAAAGACATTGAGAAGAAGTGGAAAATGGGATGCCATGCTTGTGAGAAGAGATAGGCATAGGCTTCAATGGAAGTTAGAAGTAGGAGGATGAGAAATTCCATTGGCGAAGGAATGGAGGAAGAGTGGGGGATGGGATGGGAATTTGAATGGTGTGTGTGTGGAAATGGAAGTGTGGAGGTTAAATGAAGCCCCAACTGGGGTCTGCAACTTTTGCCAATTCCCTTTGCTCGATGTGCCGCTGGCAGGTAACAGGTGGGAACTTTAAATTTGATGCCATGCTTCACCCAGAAGTAATTACTATTGACTGTTGGGTTAAAAAACATCTATTTTCAACTTTGAGGTTTTTATTTAATAGGTTTAAAACTTCATTTTATGTATAATATATCACTAAACCAAATTTGATTCCAATGGTTTGAAAGAAAAAAAAAAAAAAAAAATTAAGACATGATTTTAAAAGTTATAATTTGTGTGTTTTTAATTGTTTGTTTTTGAAAATTAACCATATTTTATTTCCATTTCTTAACCCGATTTGCGTCTTTCTAAGTACAATGGTTGAATTCTTAGCCAAATTTCAAAATTAAAACAACCTTTCAAAAGTTATTTTTCTTTTAACTTTTAAATTTTGACTTAATTTTTTAAATTATTGGTAAATAGTAAATAACAAAAGAAAAATTTTGGGGATGAAAATAATGTCTATAGACTTAATTTTCAAAATAAAATCGTTATCAAGTTAGACCTTAGTTTTTATGATTGATAAAATCTCATAAATAGCCCTTGATTAAATCCTCTAGGAATTATTTAGGAGTGTTTTATTAAAACATAAGGACTAAATTCTAAGTAAAAATTAAAAAAAAAAAAAAAAACTAAATTCTAACTTTCTCCGGGTACTAAATTTATAATTCAACCTTCCTTAAACAATTATTAGGTAGATATAAAACATTAACTTTTGGAATAATTGTAGAAATATTAGGGTTTGCTTAGTCGACAATCTTGAAAAAATGTAAATAAATATAGTATTTTATGTGGTAAGGTACTCGGATATATGATGTATTTTTAGTTATATGCTATTAGAAATGAATAATTATATAAGAATTGTAACATAAAACATATTCCTGAATTAATTTATGATAGATAATAATTTAACTCAATATTTAGTGTAACTACAACTAGTTTGTGATTTACAAATATATTATAATAGTACATTTTGAAATTTGAACAATGGTTTTAATTGGAATCTAATTTCTTATATTTTGCTACCAAATATTAAAATTATTAATATTATTATTTTGAAGAAGAAAATTCAAACATGAACTGCGGAGACAATGTTAAGATTTATACCCATGTGGCTTTGACCTTCCTCTTGTCTAGCCAAATCTAAAAGACTTTCATACCAATTGATATATTTTCTCTCACTAGTATGTTCGTAATTTTTCTCTTATCCTATCAATGTTAGGTCTTTAGTAGCATTCTCTCAAAATTCTCACTTCAAACAAAAGACCATTGAGTCTTCCCTTGAATACTTATCATTCTAACTCTTATCCAAGTCAACTCCTCTTTATTGAAGCACACCACTTATCGACATCGGCGGATTTAGTATAGACTTAGAGAGAGTTTGAGTCCCCCTCAATTTTATGCTCTTTATATATATATAAATGGACATAGTATCAATATCATTAGCTAGTTCTTTTAGCCCTCTTTAGACCCAGGTTCAAATCCCACTTTTACTGAATTATAAAGCGTACACGGAAGTGTATACCATGATTCTTCTGTCTATCAATAACGGCATGCATTGCACAGTGAATGTGAAGAAGTAGACCATCATCTCGGCAATAATGAGCCAAGCTAGGATTTGTAGTGAATCCACCTGTTAAGTAGTCATGTATTACGATAGGAACTCCCAATTCTTGGGCAAATACAGCCTCCCATCAATAAAATTTATGGATCTACCACTGCTTATTAATCTCGAATATATCATGACTACATCTTTCGAGACTTACCACTTCTTTTTCTACACTCAATGATTCTATTGATGTGATTTTGATACCAATTGTTAAGGACATGCACCATTCATATATCTTCACAATTGTATTGATGTTGTCCATTTTAACTTTCATGATTTTATTTTTGCTACCAGATAAATCTCCTCATACTAACAGAAATATTGCCCACTTATATACACAGACTTTCCCTTATCTTGCCGGTATGTGATTTTAGTTGTATTCCAAGTGTAATTGTAAAGACTACACAATGGAATGAAATCAAACTTTGATCTAATTGAAAAAAAAATATACCCAAACAAACATATGATACAATCTTCCTCCTGCTCTTTGGACTTTAGTAATTTTTTTTGTACGGACATTAAAAATTTTAATGGATTCTATTTTCAATTGAAATCCTACTTCCCTAGAGTCATATGTATTGAACAAGTACCTAATTTCAATGTTGTCAAAAAAAAAAAAAAAAAAAAAATCAAGTTTCGACTTTGGGTAGGAATGTACATCGGTTGATTGGTATTGGTTTCAGGAGAAAACTGACATCAAAATTGAATGCAGGCTGTTGTTTGTGGGACGAAGAGCATAGAGAACTGGGAGGTGGAG

mRNA sequence

ATCGCCTTTTTCAACTCTTTCTTTAGCTTCCAAATATGCAAGTTCATACCACAACGAAGAAGACGACTGGTTCCCAAATCTATACAGAGTCTTCAATGCCGCTTCCACTTCCTTATCATTAAGCTTCAGTACTTTTCCGATCTCCCTTATAACCGCACCCCCCGACACCGGCAAGCAAAAATGTTGAATCACTGTTTTGAAATTCGGTATGTAAATTTCTTGCGATTTGTCCAAAAAACGCTTTCTTAGCCTCGATACCCCATGCCGTAGTTTCTCCGTAAGCGGCAACATTGAAGCACCCAGAATCGTTATGTTTGATCGGAGAGTTTCTCCGGCGACTTGGAGTAAATCCCTTGTCAGAGTGACGCCGAGTTTTCCGTCCATGTCCTCTTCGCGTAAGGCTGATAGAATAGCTGCACTGCCCATCCGAAAGAGGCAGTTAAGGATCAATTTAGAGCGTTCCTTTCCTGCATACCAACCGTTAGACAAAATTTCTGTACTAAGCACGACTGCATATGAGTTTTTATGAACTTGAAGTAGATTTTCAGCTAAATGAATAGCAATAGCGCTTGCACTACACCCCATTCCAGAGAGATTGTAGCTCTTGATGTCACTTTTCATTGAATATTTGTTGATGACTATGGAAGACAGAGAAGGAGAAGGGCAAAAGCCACTGCAATTAACGATAAGAATATCAATGTCGGAAGGAGAGAGATGGGTTTTGGTTAAAAGGTCATCCATGACAGGAAACAGCACCATATGGACTTCATTAATGGATTCTTGTAGATGGGTTTTGGGTGGTATGAAATGCAGGGCTGGTGGGAGACAAGTTTCTTCACTCTGTCCAGAAGACTTGAGAGTTTTGGCCATGAAACTGATGCTCTCACTGTCAAAAGTATCCATCAAAGTGGCATTTTCAAGGAAAGTAGAGAATGGAACCCTGAAGAAGCTTGGTGGTTTGAGGCATGAGAAGTCAACTAAGTAGACTGATTTAGGAGAGGCAATATTGAAGATGATGAAGACGACAAGGAAAGACATTGAGAAGAAGTGGAAAATGGGATGCCATGCTTGTGAGAAGAGATAGGCATAGGCTTCAATGGAAGTTAGAAGTAGGAGGATGAGAAATTCCATTGGCGAAGGAATGGAGGAAGAGTGGGGGATGGGATGGGAATTTGAATGGTGTGTGTGTGGAAATGGAAGTGTGGAGGTTAAATGAAGCCCCAACTGGGGTCTGCAACTTTTGCCAATTCCCTTTGCTCGATGTGCCGCTGGCAGGCTGTTGTTTGTGGGACGAAGAGCATAGAGAACTGGGAGGTGGAG

Coding sequence (CDS)

ATGTCACTTTTCATTGAATATTTGTTGATGACTATGGAAGACAGAGAAGGAGAAGGGCAAAAGCCACTGCAATTAACGATAAGAATATCAATGTCGGAAGGAGAGAGATGGGTTTTGGTTAAAAGGTCATCCATGACAGGAAACAGCACCATATGGACTTCATTAATGGATTCTTGTAGATGGGTTTTGGGTGGTATGAAATGCAGGGCTGGTGGGAGACAAGTTTCTTCACTCTGTCCAGAAGACTTGAGAGTTTTGGCCATGAAACTGATGCTCTCACTGTCAAAAGTATCCATCAAAGTGGCATTTTCAAGGAAAGTAGAGAATGGAACCCTGAAGAAGCTTGGTGGTTTGAGGCATGAGAAGTCAACTAAGTAG

Protein sequence

MSLFIEYLLMTMEDREGEGQKPLQLTIRISMSEGERWVLVKRSSMTGNSTIWTSLMDSCRWVLGGMKCRAGGRQVSSLCPEDLRVLAMKLMLSLSKVSIKVAFSRKVENGTLKKLGGLRHEKSTK
Homology
[Close]
BLAST of Bhi01M001031 vs. TrEMBL
Match: tr|A0A0A0L5P9|A0A0A0L5P9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178515 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 45  MTGNSTIWTSLMDSCRWVLGGMKCRAGGRQVSSLCPEDLRVLAMKLMLSLSKVSIKVAFS 104
           MTGNST+WTSLMDSC WVLGGMKCRAGGRQV SLCPEDLRVLAMKL+LSLSK+SIKVAFS
Sbjct: 1   MTGNSTMWTSLMDSCIWVLGGMKCRAGGRQVCSLCPEDLRVLAMKLILSLSKISIKVAFS 60

Query: 105 RKVENGTLKKLGGLRHEKSTK 126
           RKVE GTLKKLGGLRHEKSTK
Sbjct: 61  RKVEKGTLKKLGGLRHEKSTK 81

[Close]
BLAST of Bhi01M001031 vs. TrEMBL
Match: tr|C4J6V0|C4J6V0_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-09
Identity = 50/112 (44.64%), Postives = 61/112 (54.46%), Query Frame = 0 

Query: 7   YLLMTMEDREGEGQKPLQLTIRISMSEGERWVLVKRSSMTGNSTIWTSLMDSCRWVLGGM 66
           YLL TM D EG G+K LQLT R+S S G   V  +RSSM   +T   S  ++    LGGM
Sbjct: 47  YLLTTMADSEGVGEKRLQLTTRMSTSLGLVPVRRRRSSMAEKTTSCASAREASMLGLGGM 106

Query: 67  KCRAGGRQVSSLCPEDLRVLAMKLMLSLSKVSIKVAFSRKVENGTLKKLGGL 119
           K  AGGR VSS  P+  R+      L  S +  +V  S KV  GT +  GGL
Sbjct: 107 KWLAGGRHVSSPSPDRSRIRVWNRTLLSSSLMRRVC-SMKVAKGTRQLPGGL 157

[Close]
BLAST of Bhi01M001031 vs. TrEMBL
Match: tr|A0A2P5CG56|A0A2P5CG56_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_286450 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-05
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1  MSLFIEYLLMTMEDREGEGQKPLQLTIRISMSEGERWVLVKRSSMTGNSTIWTSLMDS 59
          MSL +EYL              LQ TIRIS+SEGE  VL KRSSM G   IWTSLM+S
Sbjct: 36 MSLRMEYLXXXXXXXXXXXXXXLQFTIRISISEGESLVLAKRSSMMGKRAIWTSLMES 93

[Close]
BLAST of Bhi01M001031 vs. NCBI nr
Match: KGN57310.1 (hypothetical protein Csa_3G178515 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 45  MTGNSTIWTSLMDSCRWVLGGMKCRAGGRQVSSLCPEDLRVLAMKLMLSLSKVSIKVAFS 104
           MTGNST+WTSLMDSC WVLGGMKCRAGGRQV SLCPEDLRVLAMKL+LSLSK+SIKVAFS
Sbjct: 1   MTGNSTMWTSLMDSCIWVLGGMKCRAGGRQVCSLCPEDLRVLAMKLILSLSKISIKVAFS 60

Query: 105 RKVENGTLKKLGGLRHEKSTK 126
           RKVE GTLKKLGGLRHEKSTK
Sbjct: 61  RKVEKGTLKKLGGLRHEKSTK 81

[Close]
BLAST of Bhi01M001031 vs. NCBI nr
Match: ACR36900.1 (unknown [Zea mays])

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 50/112 (44.64%), Postives = 61/112 (54.46%), Query Frame = 0 

Query: 7   YLLMTMEDREGEGQKPLQLTIRISMSEGERWVLVKRSSMTGNSTIWTSLMDSCRWVLGGM 66
           YLL TM D EG G+K LQLT R+S S G   V  +RSSM   +T   S  ++    LGGM
Sbjct: 47  YLLTTMADSEGVGEKRLQLTTRMSTSLGLVPVRRRRSSMAEKTTSCASAREASMLGLGGM 106

Query: 67  KCRAGGRQVSSLCPEDLRVLAMKLMLSLSKVSIKVAFSRKVENGTLKKLGGL 119
           K  AGGR VSS  P+  R+      L  S +  +V  S KV  GT +  GGL
Sbjct: 107 KWLAGGRHVSSPSPDRSRIRVWNRTLLSSSLMRRVC-SMKVAKGTRQLPGGL 157

[Close]
BLAST of Bhi01M001031 vs. NCBI nr
Match: PON59998.1 (hypothetical protein TorRG33x02_286450 [Trema orientalis])

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-05
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1  MSLFIEYLLMTMEDREGEGQKPLQLTIRISMSEGERWVLVKRSSMTGNSTIWTSLMDS 59
          MSL +EYL              LQ TIRIS+SEGE  VL KRSSM G   IWTSLM+S
Sbjct: 36 MSLRMEYLXXXXXXXXXXXXXXLQFTIRISISEGESLVLAKRSSMMGKRAIWTSLMES 93

The following BLAST results are available for this feature:
BLAST of Bhi01M001031 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi01M001031 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi01M001031 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5P9|A0A0A0L5P9_CUCSA1.4e-3392.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178515 PE=4 SV=1[more]
tr|C4J6V0|C4J6V0_MAIZE9.0e-0944.64Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
tr|A0A2P5CG56|A0A2P5CG56_9ROSA4.6e-0555.17Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_286450 PE=4 S... [more]
BLAST of Bhi01M001031 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57310.12.1e-3392.59hypothetical protein Csa_3G178515 [Cucumis sativus][more]
ACR36900.11.4e-0844.64unknown [Zea mays][more]
PON59998.17.0e-0555.17hypothetical protein TorRG33x02_286450 [Trema orientalis][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi01G001031Bhi01G001031gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi01M001031Bhi01M001031-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001031.utr5p1Bhi01M001031.utr5p1five_prime_UTR
Bhi01M001031.utr5p2Bhi01M001031.utr5p2five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001031.exon1Bhi01M001031.exon1exon
Bhi01M001031.exon2Bhi01M001031.exon2exon
Bhi01M001031.exon3Bhi01M001031.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi01M001031cds.Bhi01M001031CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001031.utr3p1Bhi01M001031.utr3p1three_prime_UTR
Bhi01M001031.utr3p2Bhi01M001031.utr3p2three_prime_UTR