MELO3C035757.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035757.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr12 : 26147448 .. 26148071 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGATAGTGTTAAAGTCATAAATTCTCTTAAATCTTGTAAAACTTGAACATCCACATAGTGAGAAAAAGGCTAAGTTAATAGTTAGATATGAACCTTATGCCATTGGGTAGCACCACTTCCTCTTCCTTCTCAACGTTTCTGCAGGATCCAATGCTTGGTTATGGAAGCATCTCGTTAATGGTAAAACAAATCATAATTTTGAAAAATGGATTGATGATCTATTGTTCTTAATTCAATTTTTTTTATAATAAAAGCCATTCTGATGTTCAACAATTTTTGTTGGGAATCATAACAAACACCTAGGCGGCATTCTGTTATTCACAACAATTCCTAAGATGCCACTGGCTTCTGATGCTAAGGAAATTACGTACTCAGAACAGAATAGCGTGAAAATCATTGAAAAGGCAAATGGATTGAGGACCTTGTATTAGCTACTTCTTGAGAGACTTCGAGGCGAGTTTTGATTTGTTCGGAGACTACACCAACGGCGAGAAAAGCAGCCCATGCAAGGCCAGCGCCGAGCCCAAATCGTCTCGTCAAAGTTGAAGCAATCCAATCCGTAGAATCGACATTGGTGGTAGACCTCTGTTGCTCCACCTTTGATGGGGCTGGTTTAAGTTGA

mRNA sequence

AAGGATAGTGTTAAAGTCATAAATTCTCTTAAATCTTGTAAAACTTGAACATCCACATAGTGAGAAAAAGGCTAAGTTAATAGTTAGATATGAACCTTATGCCATTGGGTAGCACCACTTCCTCTTCCTTCTCAACGTTTCTGCAGGATCCAATGCTTGGTTATGGAAGCATCTCGTTAATGATGCCACTGGCTTCTGATGCTAAGGAAATTACGTACTCAGAACAGAATAGCGTGAAAATCATTGAAAAGGCAAATGGATTGAGGACCTTGCGAGTTTTGATTTGTTCGGAGACTACACCAACGGCGAGAAAAGCAGCCCATGCAAGGCCAGCGCCGAGCCCAAATCGTCTCGTCAAAGTTGAAGCAATCCAATCCGTAGAATCGACATTGGTGGTAGACCTCTGTTGCTCCACCTTTGATGGGGCTGGTTTAAGTTGA

Coding sequence (CDS)

ATGAACCTTATGCCATTGGGTAGCACCACTTCCTCTTCCTTCTCAACGTTTCTGCAGGATCCAATGCTTGGTTATGGAAGCATCTCGTTAATGATGCCACTGGCTTCTGATGCTAAGGAAATTACGTACTCAGAACAGAATAGCGTGAAAATCATTGAAAAGGCAAATGGATTGAGGACCTTGCGAGTTTTGATTTGTTCGGAGACTACACCAACGGCGAGAAAAGCAGCCCATGCAAGGCCAGCGCCGAGCCCAAATCGTCTCGTCAAAGTTGAAGCAATCCAATCCGTAGAATCGACATTGGTGGTAGACCTCTGTTGCTCCACCTTTGATGGGGCTGGTTTAAGTTGA

Protein sequence

MNLMPLGSTTSSSFSTFLQDPMLGYGSISLMMPLASDAKEITYSEQNSVKIIEKANGLRTLRVLICSETTPTARKAAHARPAPSPNRLVKVEAIQSVESTLVVDLCCSTFDGAGLS
Homology
[Close]
BLAST of MELO3C035757.2 vs. NCBI nr
Match: PPD99490.1 (hypothetical protein GOBAR_DD03504 [Gossypium barbadense])

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 36/63 (57.14%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 70  TPTARKAAHARPAPSPNRLVKVEAIQSVESTLVVDL-----------CCS------TFDG 116
           TPTARKA HARPAP P RLVK EAIQSV ST+VV L           CCS        DG
Sbjct: 2   TPTARKADHARPAPRPKRLVKEEAIQSVVSTVVVGLGGFGSRTVTGGCCSDEVVVNLGDG 61

[Close]
BLAST of MELO3C035757.2 vs. TrEMBL
Match: tr|A0A2P5SKB9|A0A2P5SKB9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD03504 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 36/63 (57.14%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 70  TPTARKAAHARPAPSPNRLVKVEAIQSVESTLVVDL-----------CCS------TFDG 116
           TPTARKA HARPAP P RLVK EAIQSV ST+VV L           CCS        DG
Sbjct: 2   TPTARKADHARPAPRPKRLVKEEAIQSVVSTVVVGLGGFGSRTVTGGCCSDEVVVNLGDG 61

The following BLAST results are available for this feature:
BLAST of MELO3C035757.2 vs. NCBI nr
Match NameE-valueIdentityDescription
PPD99490.11.9e-0457.14hypothetical protein GOBAR_DD03504 [Gossypium barbadense][more]
BLAST of MELO3C035757.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035757.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035757.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5SKB9|A0A2P5SKB9_GOSBA1.2e-0457.14Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD03504 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035757.2.1MELO3C035757.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035757.2Cucumber (Gy14) v2cgybmedB020
MELO3C035757.2Cucumber (Gy14) v2cgybmedB025
MELO3C035757.2Cucumber (Gy14) v1cgymedB157
MELO3C035757.2Cucumber (Gy14) v1cgymedB182
MELO3C035757.2Cucurbita maxima (Rimu)cmamedB056
MELO3C035757.2Cucurbita maxima (Rimu)cmamedB098
MELO3C035757.2Cucurbita maxima (Rimu)cmamedB214
MELO3C035757.2Cucurbita maxima (Rimu)cmamedB424
MELO3C035757.2Cucurbita moschata (Rifu)cmomedB048
MELO3C035757.2Cucurbita moschata (Rifu)cmomedB090
MELO3C035757.2Cucurbita moschata (Rifu)cmomedB202
MELO3C035757.2Cucurbita moschata (Rifu)cmomedB408
MELO3C035757.2Cucurbita pepo (Zucchini)cpemedB031
MELO3C035757.2Cucurbita pepo (Zucchini)cpemedB380
MELO3C035757.2Cucurbita pepo (Zucchini)cpemedB560
MELO3C035757.2Cucumber (Chinese Long) v2cumedB022
MELO3C035757.2Cucurbita pepo (Zucchini)cpemedB711
MELO3C035757.2Wild cucumber (PI 183967)cpimedB023
MELO3C035757.2Wild cucumber (PI 183967)cpimedB029
MELO3C035757.2Cucumber (Chinese Long) v2cumedB028
MELO3C035757.2Melon (DHL92) v3.6.1medmedB064
MELO3C035757.2Bottle gourd (USVL1VR-Ls)lsimedB189
MELO3C035757.2Bottle gourd (USVL1VR-Ls)lsimedB413
MELO3C035757.2Watermelon (Charleston Gray)medwcgB146
MELO3C035757.2Watermelon (Charleston Gray)medwcgB150
MELO3C035757.2Watermelon (97103) v1medwmB170
MELO3C035757.2Watermelon (97103) v1medwmB177
MELO3C035757.2Silver-seed gourdcarmedB0397
MELO3C035757.2Silver-seed gourdcarmedB0504
MELO3C035757.2Silver-seed gourdcarmedB0605
MELO3C035757.2Silver-seed gourdcarmedB0795
MELO3C035757.2Cucumber (Chinese Long) v3cucmedB022
MELO3C035757.2Cucumber (Chinese Long) v3cucmedB024
MELO3C035757.2Watermelon (97103) v2medwmbB147
MELO3C035757.2Watermelon (97103) v2medwmbB150
MELO3C035757.2Wax gourdmedwgoB175
MELO3C035757.2Wax gourdmedwgoB197