MELO3C035651.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035651.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionU-box domain-containing protein 4
Locationchr12 : 15939820 .. 15941421 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTGCTGGTGCTGGTTTGTATCTACAAAAGCTTGTTGAAATGAATGTTGAGGGGTCAAAGAAGCTATTGGAAAGCCTTGGGCGTGGTAAAATCTGGGGTGTCTTTGCTAGATCTTAGCCCATCAAGGAGGCAATTTTCCAAAATTCTGTTTATTGTATAGGAACAGAAGCATGATTCGCTGTATGTACAATATATGTTTGTATATTCTTAGTTTTAATGGGTGTTGATTTTTAGTTTACAAGTTAATAATCTTTTTATCTGTTCTTATGTGGTAGAAATGTCAAAATGCTGCACCATGCCAGCTGAATTTGAGCATCACTTTACAGACACGATCTAGGTTTGATGACCCAACTTGATTTTGATTCTGTGATCATTACTGGAAACTTCATTGTCCAATAATCGAATGACACACCTTTCAATTATTTTAGGAAATGACACACCTTTCAATTATTTTAGGAAATGTTCTCTATAATTTTAGATTTTGCAGCTGTTATATTATTCTAATGAAGAAAATAAACTTTCGAGGATGAATTTTTGTTTTCCATTTAACTGATGGAGAAGGTTGGAAGGCCTGCTCTGAGTCTTCTTTGATAATAAATTATAGTATGTATCTTTTATTCCATTATTTGGTCTTGGTAATCCTAGAAATTTAGAAGACCACCCTTCTCAATTCTTCTATATATATTTCAAACAAAATTATTGGGGTAGGTTTCTGATTGCCTTTTCTGTTGTCAATTATGTAAGTATCTTATTTACAGCACTTTTCTTACCTTCTCATCATTTGCAGTTTAGAATATAAGAATAATTGTATGCCATTTTAACATTATTGATCCAATATATGCTTATTTTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGCTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTATTTGTTGGCTGGTGCCTTAACAGGTAAGGGTCCTACCAAACTCTTGGCCCATTCCACCCATTTGCTCTGTTGACTGACCTAAGCTAAGCTCATTAGTTTATTTTATATGCTCTCAATCCCTTTTCTTCTTCTTTACATAATGATGTTATCCAGTTTGAAGCTGAAGATACCTTTTTTTTTATTTTTGAAGCAGTAAACAAATTACTGTTTATTTCCTATGTTCTTAGCTTTATAATGGATTTGACTTGACCAAATATATACTTGAGTAGTGAGAACGAAATGGATTAGAAGGTCAGAACTTTTGGGCAAATTATGGGTTTTCCTTTTTCCCTGCCCAGTCCCTTTTGTAGCCAAGCTGGTTTCATGATGAAATTACGAATTAGTGACTAGTAGAGTATCTAATCATGAAAGCTGTCCAAAACATGAATTTACACTCCGCCATTTGTGAGAGAGGGGCCGTTTTATCTTACAATTAAGATTTAGAGAACGAGTAGCAAAAACATTCTTAGACTCTCTAGTCTAATCAATCAGCCTTAAGACGACGCTTGGGACAACAACTAAGCAAATGGTGGATGCTTCTTCTTTGCTGTTTTATCAACACGGTATCGTAGAGAAGAGATTAACGTTAATGGCTAAAGGGAGCTAA

mRNA sequence

ATGGTTGCTGCTGGTGCTGGTTTGTATCTACAAAAGCTTGTTGAAATGAATGTTGAGGGGTCAAAGAAGCTATTGGAAAGCCTTGGGCGTGGTAAAATCTGGGGTGAACAGAAGCATGATTCGCTGTATAAATGTCAAAATGCTGCACCATGCCAGCTGAATTTGAGCATCACTTTACAGACACGATCTAGCCTTAAGACGACGCTTGGGACAACAACTAAGCAAATGGTGGATGCTTCTTCTTTGCTGTTTTATCAACACGGTATCGTAGAGAAGAGATTAACGTTAATGGCTAAAGGGAGCTAA

Coding sequence (CDS)

ATGGTTGCTGCTGGTGCTGGTTTGTATCTACAAAAGCTTGTTGAAATGAATGTTGAGGGGTCAAAGAAGCTATTGGAAAGCCTTGGGCGTGGTAAAATCTGGGGTGAACAGAAGCATGATTCGCTGTATAAATGTCAAAATGCTGCACCATGCCAGCTGAATTTGAGCATCACTTTACAGACACGATCTAGCCTTAAGACGACGCTTGGGACAACAACTAAGCAAATGGTGGATGCTTCTTCTTTGCTGTTTTATCAACACGGTATCGTAGAGAAGAGATTAACGTTAATGGCTAAAGGGAGCTAA

Protein sequence

MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWGEQKHDSLYKCQNAAPCQLNLSITLQTRSSLKTTLGTTTKQMVDASSLLFYQHGIVEKRLTLMAKGS
Homology
[Close]
BLAST of MELO3C035651.2 vs. NCBI nr
Match: XP_008458985.1 (PREDICTED: vacuolar protein 8 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG
Sbjct: 512 MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. NCBI nr
Match: XP_004145464.1 (PREDICTED: vacuolar protein 8 [Cucumis sativus] >KGN66829.1 hypothetical protein Csa_1G699580 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGAGLYLQKLVE+NVEGSKKLLESLGRGKIWG
Sbjct: 512 MVAAGAGLYLQKLVEINVEGSKKLLESLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. NCBI nr
Match: XP_022955254.1 (vacuolar protein 8 [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           M AAGAGLYLQKLVEMNV+GSKKLLE LGRGKIWG
Sbjct: 512 MAAAGAGLYLQKLVEMNVDGSKKLLECLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. NCBI nr
Match: XP_022994373.1 (vacuolar protein 8 [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           M AAGAGLYLQKLVEMNV+GSKKLLE LGRGKIWG
Sbjct: 512 MAAAGAGLYLQKLVEMNVDGSKKLLECLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. NCBI nr
Match: XP_023542631.1 (vacuolar protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           M AAGAGLYLQKLVEMNV+GSKKLLE LGRGKIWG
Sbjct: 512 MAAAGAGLYLQKLVEMNVDGSKKLLECLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. TAIR10
Match: AT5G50900.1 (ARM repeat superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           +VAAGA L+LQKLV+M+ EG+KKL E+L R KIWG
Sbjct: 516 VVAAGACLHLQKLVDMDTEGAKKLAENLSRSKIWG 550

[Close]
BLAST of MELO3C035651.2 vs. TrEMBL
Match: tr|A0A1S3C8N4|A0A1S3C8N4_CUCME (vacuolar protein 8 OS=Cucumis melo OX=3656 GN=LOC103498236 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG
Sbjct: 512 MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. TrEMBL
Match: tr|A0A0A0M0M7|A0A0A0M0M7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699580 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGAGLYLQKLVE+NVEGSKKLLESLGRGKIWG
Sbjct: 512 MVAAGAGLYLQKLVEINVEGSKKLLESLGRGKIWG 546

[Close]
BLAST of MELO3C035651.2 vs. TrEMBL
Match: tr|A0A061G6D5|A0A061G6D5_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_014724 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGA +YLQKLVEMNVEG+KKLLESLGRGKIWG
Sbjct: 511 MVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWG 545

[Close]
BLAST of MELO3C035651.2 vs. TrEMBL
Match: tr|A0A1U8LWA1|A0A1U8LWA1_GOSHI (uncharacterized protein LOC107931477 OS=Gossypium hirsutum OX=3635 GN=LOC107931477 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGA +YLQKLVEMNVEG+KKLLESLGRGKIWG
Sbjct: 511 MVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWG 545

[Close]
BLAST of MELO3C035651.2 vs. TrEMBL
Match: tr|A0A1U8MPI1|A0A1U8MPI1_GOSHI (uncharacterized protein LOC107939838 OS=Gossypium hirsutum OX=3635 GN=LOC107939838 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1   MVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWG 36
           MVAAGA +YLQKLVEMNVEG+KKLLESLGRGKIWG
Sbjct: 511 MVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWG 545

The following BLAST results are available for this feature:
BLAST of MELO3C035651.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458985.11.7e-09100.00PREDICTED: vacuolar protein 8 [Cucumis melo][more]
XP_004145464.14.9e-0997.14PREDICTED: vacuolar protein 8 [Cucumis sativus] >KGN66829.1 hypothetical protein... [more]
XP_022955254.14.2e-0891.43vacuolar protein 8 [Cucurbita moschata][more]
XP_022994373.14.2e-0891.43vacuolar protein 8 [Cucurbita maxima][more]
XP_023542631.14.2e-0891.43vacuolar protein 8 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C035651.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50900.14.3e-0768.57ARM repeat superfamily protein[more]
BLAST of MELO3C035651.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035651.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C8N4|A0A1S3C8N4_CUCME1.1e-09100.00vacuolar protein 8 OS=Cucumis melo OX=3656 GN=LOC103498236 PE=4 SV=1[more]
tr|A0A0A0M0M7|A0A0A0M0M7_CUCSA3.3e-0997.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699580 PE=4 SV=1[more]
tr|A0A061G6D5|A0A061G6D5_THECC6.1e-0891.43ARM repeat superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_01472... [more]
tr|A0A1U8LWA1|A0A1U8LWA1_GOSHI6.1e-0891.43uncharacterized protein LOC107931477 OS=Gossypium hirsutum OX=3635 GN=LOC1079314... [more]
tr|A0A1U8MPI1|A0A1U8MPI1_GOSHI6.1e-0891.43uncharacterized protein LOC107939838 OS=Gossypium hirsutum OX=3635 GN=LOC1079398... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035651.2.1MELO3C035651.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C035651.2Cla97C01G010010Watermelon (97103) v2medwmbB131
MELO3C035651.2Bhi08G000654Wax gourdmedwgoB184
MELO3C035651.2Carg25905Silver-seed gourdcarmedB0236
MELO3C035651.2CsaV3_1G045910Cucumber (Chinese Long) v3cucmedB011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035651.2Cucumber (Gy14) v2cgybmedB011
MELO3C035651.2Cucumber (Gy14) v1cgymedB544
MELO3C035651.2Cucurbita maxima (Rimu)cmamedB213
MELO3C035651.2Cucurbita maxima (Rimu)cmamedB416
MELO3C035651.2Cucurbita maxima (Rimu)cmamedB423
MELO3C035651.2Cucurbita moschata (Rifu)cmomedB201
MELO3C035651.2Cucurbita moschata (Rifu)cmomedB409
MELO3C035651.2Cucurbita pepo (Zucchini)cpemedB562
MELO3C035651.2Cucurbita pepo (Zucchini)cpemedB585
MELO3C035651.2Wild cucumber (PI 183967)cpimedB013
MELO3C035651.2Cucumber (Chinese Long) v2cumedB012
MELO3C035651.2Bottle gourd (USVL1VR-Ls)lsimedB190
MELO3C035651.2Watermelon (Charleston Gray)medwcgB132
MELO3C035651.2Watermelon (97103) v1medwmB151
MELO3C035651.2Wax gourdmedwgoB167