MELO3C035647.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035647.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionFanconi anemia group J protein homolog isoform X1
Locationchr12 : 15773847 .. 15775839 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGCTCGTGACCCCTAGAGGGCTACCATAAACTCCGGCCAAAACCCTAGAGGACCTGAAGTTCTCTCTTCTCACTAAAACACTCGTTTCACAGGTTGCATCATCTTTCTACTTCATCTGAGAAATATGTTGGGTTCTCTAGTGTTTATAGATACAGAGTCATATCTTGCAGGGCTAAACACCAAAAGTCAGAAGAAAAAACAGCCCCGACCATATACTACTCCTCATAAGTTTCAACTTACTGCAATAATGAAACAAGGGCTTAGCTTGGATTTTTTTTCTTATTGTCTTTCTCATTAAAATTTGATGCTAATGCTATACAGTTTCTTTATTCAAGGAGGACAGATTCACAGATATCACAAGTGATCCGTGAGTATAGGAAAACTACCTATCAATTGTCAATGGCAATGTTGGTATGCCACCTCTTTAACATGTGTGCGTGTGTACGTATTGTATGAGATTATCCATTGAAGGAATTTGAGAAGTTGAATTTACTGGTTTTGGTTGTAAGAACTCACTGACTTCTGGTCTTGGTTGTACGTATTGGATAAGATATATGAGAACGATCTCTAGACTTTCTACTAATCTACATGTTGAATTCATCAAAATGTAGCCCATTCTATCAGCTTGTGTGGCCTTTATTTTCTATTGTCCATGAATTTGTGTATTTACTAATCAGAGAAACATACTTCTGCATGTTACAAGAAGAAGTTATCATATATGTATTGAATATTTTTTGGAGCTATTCAAAGAGTGATGAAAATCTAACTACTTTCTGCTCCTAACTTGTTAGACTTGAAACTGGGGTTTCTTGCCATGATGTAACTGTTAGACGATGATTTAATATGGATGTTGATTTGGTTGACATATTTGGTTCCATTTTGTCCTGGAAATGTTTAGTCTATGTATGGGTATTCTTTGGGTAAATTTTACCTTTAGTCTTGAACATTTTATCATTTTAAATGGACACATTTTATATTATGTTAATTCTCCTATCATTGTATTGAACAATCATTCATCAGTTTAGGTATGCTGAAAAGAAATATCTTCTTTAGAAATTATGGTATGTATTCTTCTCGACGAATAAGAATGATAGAATTATGTAATCAATTGACATCTCAAATTTATTGTGAGCATCGTTAGCTTAGTTGATATGTTTGTTTGCAACCATTAATTATTTTAGGTTTTCAACATTCTTGTTCAAATATCGGTAGAATACTGGACATCTGTAATTTTTGTTCAAACATTAGTTGTATTGGATGAGCCCTACATAATGTAGTGATGTCATGTTAATTATATAGTTTTATAAACATGAAATGTCTTGCTAGAGATTCATAAATGTACTTGCTGAATATTTGAGAAAGTTGTTTACATTCAAATCATAAGTTTGCCTTGCTTCACCGTTTTATCAATATGTTTCGAAAGTTTATCACATGTTAATTTATAAGAAAATTAGTTTTATAAACCAGTCACTCATTGAGTTTTATAGCTCACTATTTTAAAATGTTTTTCCACTTTCCAGGTAGAGATTGAGCTCTTGATGCCTGACACGCTGCCACAGTCGGCTAGAAGTTTCCAGTTTTATTTTCAGTACGTGGGTGGAGTTGTACATCGAGTTTGTGTATATGTTGTTGTAAGAGTTGGTTTAGTTTATAGGTCTGTGTAAGCGTGCTAGATGTTATGATTACTAGAGCCTTGGTTGAATGTGTCTTGGTTGTAAATTTTTTTATCAGGATTTCCATTCTGAATGAGTTTAGACTGGGCTATACTACGTGTTTACGTGAGTGTATATTAATTTCCACTGTGTTGAGTTAGTCAGTTATGTGTCTCTTACATAAGAGTAGTATGTTTATTAGGTTAAGGGTTTAAATAAGGTTAGCAAGTATCGTTAGAGGAGGACGATGTTTGTTAACTTCATGATCACGTCTTTCGAGCTAAAAGCAGGTGGCCTGGGAGGGTGTGTGACAGCTATGGGCTATAGTGGATAG

mRNA sequence

ATGGCAGCGCTCTTTCTTTATTCAAGGAGGACAGATTCACAGATATCACAAGTGATCCGTGAGTATAGGAAAACTACCTATCAATTGTCAATGGCAATGTTGGTTTTCAACATTCTTGTTCAAATATCGGTAGAATACTGGACATCTGTAGAGATTGAGCTCTTGATGCCTGACACGCTGCCACAGTCGGCTAGAAGTTTCCAGTTTTATTTTCAGTACGTGGGTGGAGTTGTACATCGAGTCTGTGTAAGCGTGCTAGATGTTATGATTACTAGAGCCTTGGTTGAATGTGTCTTGGTTAGGAGGACGATGTTTGTTAACTTCATGATCACGTCTTTCGAGCTAAAAGCAGGTGGCCTGGGAGGGTGTGTGACAGCTATGGGCTATAGTGGATAG

Coding sequence (CDS)

ATGGCAGCGCTCTTTCTTTATTCAAGGAGGACAGATTCACAGATATCACAAGTGATCCGTGAGTATAGGAAAACTACCTATCAATTGTCAATGGCAATGTTGGTTTTCAACATTCTTGTTCAAATATCGGTAGAATACTGGACATCTGTAGAGATTGAGCTCTTGATGCCTGACACGCTGCCACAGTCGGCTAGAAGTTTCCAGTTTTATTTTCAGTACGTGGGTGGAGTTGTACATCGAGTCTGTGTAAGCGTGCTAGATGTTATGATTACTAGAGCCTTGGTTGAATGTGTCTTGGTTAGGAGGACGATGTTTGTTAACTTCATGATCACGTCTTTCGAGCTAAAAGCAGGTGGCCTGGGAGGGTGTGTGACAGCTATGGGCTATAGTGGATAG

Protein sequence

MAALFLYSRRTDSQISQVIREYRKTTYQLSMAMLVFNILVQISVEYWTSVEIELLMPDTLPQSARSFQFYFQYVGGVVHRVCVSVLDVMITRALVECVLVRRTMFVNFMITSFELKAGGLGGCVTAMGYSG
Homology
[Close]
BLAST of MELO3C035647.2 vs. TAIR10
Match: AT2G05635.1 (DNA repair DEAD helicase RAD3/XP-D subfamily protein)

HSP 1 Score: 40.8 bits (94), Expect = 7.5e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 7   YSRRTDSQISQVIREYRKTTYQLSMAMLV 36
           Y+ RT SQI+QVIREYRKT Y++ MA+LV
Sbjct: 99  YASRTHSQITQVIREYRKTGYRVPMAVLV 127

The following BLAST results are available for this feature:
BLAST of MELO3C035647.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035647.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G05635.17.5e-0468.97DNA repair DEAD helicase RAD3/XP-D subfamily protein[more]
BLAST of MELO3C035647.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035647.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035647.2.1MELO3C035647.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035647.2Cucumber (Chinese Long) v3cucmedB014
MELO3C035647.2Watermelon (97103) v2medwmbB131
MELO3C035647.2Wax gourdmedwgoB167
MELO3C035647.2Wax gourdmedwgoB184
MELO3C035647.2Cucumber (Gy14) v2cgybmedB014
MELO3C035647.2Cucurbita maxima (Rimu)cmamedB213
MELO3C035647.2Cucurbita maxima (Rimu)cmamedB423
MELO3C035647.2Cucurbita moschata (Rifu)cmomedB201
MELO3C035647.2Cucurbita pepo (Zucchini)cpemedB562
MELO3C035647.2Wild cucumber (PI 183967)cpimedB016
MELO3C035647.2Cucumber (Chinese Long) v2cumedB015
MELO3C035647.2Bottle gourd (USVL1VR-Ls)lsimedB190
MELO3C035647.2Watermelon (Charleston Gray)medwcgB132
MELO3C035647.2Watermelon (97103) v1medwmB166
MELO3C035647.2Silver-seed gourdcarmedB1018